Axyl001041.3
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387370.1:4505524-4510232[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.052 3.8 8.9 3.4 1 23 10 32 10 32 0.98 2 20 0.00055 0.04 15.2 0.2 2 23 58 80 57 80 0.94 3 20 0.0078 0.56 11.5 2.0 3 23 132 153 131 153 0.97 4 20 0.54 40 5.7 1.6 1 10 158 167 158 176 0.79 5 20 5.4 3.9e+02 2.6 0.2 2 12 187 197 187 209 0.68 6 20 2.1e-05 0.0015 19.6 1.5 1 23 216 239 216 239 0.97 7 20 0.067 4.9 8.6 4.6 1 23 295 318 295 318 0.95 8 20 0.055 4 8.9 0.3 3 23 346 367 344 367 0.95 9 20 0.012 0.89 10.9 0.2 1 23 418 441 418 441 0.94 10 20 0.00022 0.016 16.4 1.6 1 23 447 470 447 470 0.96 11 20 0.056 4.1 8.8 0.3 2 23 476 498 475 498 0.91 12 20 0.00013 0.0091 17.2 0.5 1 23 505 528 505 528 0.97 13 20 0.0058 0.42 11.9 3.2 1 23 583 606 583 606 0.96 14 20 0.077 5.6 8.4 0.8 2 23 678 700 677 700 0.96 15 20 0.0071 0.51 11.7 1.7 3 23 708 728 707 729 0.95 16 20 0.06 4.4 8.7 2.5 1 23 734 757 734 757 0.90 17 20 0.0075 0.55 11.6 1.7 1 23 762 785 762 785 0.96 18 20 0.00012 0.0086 17.3 2.3 1 23 790 813 790 813 0.97 19 20 0.0008 0.058 14.6 0.2 1 23 819 841 819 841 0.98 20 20 0.0043 0.32 12.3 0.6 2 23 851 872 850 872 0.97
Sequence Information
- Coding Sequence
- ATGCCGTTCAGGAGGTACGGGAACGTCTACAGATGCTTCTACTGTCATTTGAACTTCCAACTAGCGAACGATCTCAAAGAACATTACAAAGAGCACGAAGAAGTGTACCTACGAAAAGCCATCAAAAGATGTCCTCTTCGACAAGCCGTCAAACTAGACATCTCCTATTTAAAATGCAAGCAATGTGATACAGAATTCGCTTCACTCAAAAATTTACTTATCCATCTTAATGATGTGCACGACGAGGATTGCTGCACAGACTACGAAGCCCACGTAGATTGTTTCAAACTCGCCGACGGCCAACTAAAATGCTTGGCATGCGACGACACTTTCACATTCTTCGGACCTTTACTCCTTCACACCTTGAGATTCCATAAGCAAAAACGAATCCTATGCGAAAAATGCGGGCAAACTTTCGCTACCGAATGCAGTATCAAAAGGCACAAGCAAAGCGCTCACACCACGGAAAGCTTCAAATGCAGATATTGCGACAAAAAGTTCTTAGCTGTCCACAGAAGAGACGACCACGAGAAAAGAATTCACAGCGTAAAAGAACGCAAATGTCACATTTGCGGCGAAATCCTCGGCAGCACGTACAAAAGGGACTCCCACTTAGCTGCAGTGCATGACTTCAAAACGTCCGAGTACAAATGCGAGATGTGCCCCAAAGTCTTCCGGTTTCAGAATCAGCTGGTGAAGCATAACAAGAGGGTGCATTTGAAAGAGAAAACTAAAGTTTGCGATGTCTGTGGTGACAAGTTTTTTGATAATCATTTGCTAGACACCGACGAAGAAGTCCATAAGCGAGAAGAACTCATCAAACTGCTCACCGTTATAATTCAGTACTCGACCGCCACCCCATTCAAATGGCACGCCAATAAGTTCATGTGCTTCTACTGCTCCTGTCCTTTCGAGCACAGCACCACTTTGATACAACACACGAAGGAGGAACACGAGGACGCTAAACTCCGAACCATCCTACGCTCCACGGTGACTAAAAGCCGAAGCATCAAACTGGATGTCCGCGATTTATTCTGCAAAAAATGCGACATCCCCATCCAAAATCTACAAGACCTCATCAGCCACATGAGAGAAAAGCACGGATTGAAATTGGATAAAGAAGTAACGCATTGCATCTATCCGTACGTTCTTTCGGAAAGCGACATGTCTTGTTTAGAATGTGCAATGCCTTTCAGATTCTTCGGTCCACTCTTGATCCATACCCACAAATACCACAGCAAAACGAAACAGTTCCTATGCGAACACTGCGGACAAGGTTTCATCGCTCGCGCGAACGTCGACAGCCACATCAGAAACGCTCATCCCGACCTATGCACATTCCAATGCAAAGAATGCGAAGAAATCTTCCCATCGTCGTACAAACTAAATCATCATGTTGAAAAATCACACGGTCCCGCCAGAATGAAGTGCCCCAAATGTCCAGAGATACTCACAAGCAGCTATTTAAAAAAGCGCCATCTAGCTTTTGTCCACGACGTCAAAAGCGCCCAGTTCCAATGCGACATGTGCCCCAAAATATTTACGTTGAAAAATTCGCTTTTAGCGCATAAACAGagagtgcatttaaaggagaagaactttgcttgcgaaatatACCAAAAACCGAAAACGCACGACATCCGCGTCCCAACGCAAGAAGACTGGCAGCTGGCTGCTTCGCGTCGGTATGTACACACTGTACTTTCAAACTCCACCCTCATGCCGTTCCGATGGCGCGGGAACCGATACATCTGCTTCTACTGCTACCAAACCTTCCACGACGCCACGTCTCTCCGCACACATACGAGAGGGAGCCACAAAAGCGTAGCAATCATGAAACACCTCACCCAAAACCGGACTTCAGAATTCACACCCATAAAAGTCGACGTCGGCGAACCTTTAGCATGCTTAAAATGTAAACACCAAGAAATAACCCTCGAAGGCTTGTTGGCACATTTAAAAGAACACAAACTAATAGCCGACATGGAGCAAGAGTGCTTCTTACCTTTCAAATTGGCAGACAACCAAATATCGTGCCAGAAATGCGCTAAATCATACCAGTTCTTCGGCATGTTGTATTCCCACATGAACAAAGTGCATTTGGAGGGAACGAAACGCATATGCGAAACGTGCGGGCAGAATTTCTTCTCGGACTTTAGTCTTCGTAAACACGTGCAAATTCACCATCAGTCGGCAGACTTTAAATGCAATCATTGCGATGCCAGTTTCAAACTGGATTCTAACCGAATCAGCCACGAGTTCAAAGAACATAACATAAAAACGTTCAAATGCTACAAATGTAACGAAATGTTCGGATCGCAGTACTTAAGACGTTTACACATGAACGGGACGCATCTAAAAGCTGATTTCACGTGTACTTATTGCTCCAAAGCTTTCCTACATAAATCATTGCTCGCCCGACACATCAACAGAGTCCATTTAAAGGAGAAAAAGTTTGTTTGTCCAATTTGTCAGGAGGGTTTCTTTGATTTGCCAACGCTAAATTTACATACGAAGAAGCATTCGAAGATAGCGCAGGTGATATCCCTCCAATGCAAGGTTTGCATGAGAACCTACAGCAATAAGATAGAGTTGGATGATCACATGACTACTCACAGTGGGCAGTCGTTGTCCACGAAATAA
- Protein Sequence
- MPFRRYGNVYRCFYCHLNFQLANDLKEHYKEHEEVYLRKAIKRCPLRQAVKLDISYLKCKQCDTEFASLKNLLIHLNDVHDEDCCTDYEAHVDCFKLADGQLKCLACDDTFTFFGPLLLHTLRFHKQKRILCEKCGQTFATECSIKRHKQSAHTTESFKCRYCDKKFLAVHRRDDHEKRIHSVKERKCHICGEILGSTYKRDSHLAAVHDFKTSEYKCEMCPKVFRFQNQLVKHNKRVHLKEKTKVCDVCGDKFFDNHLLDTDEEVHKREELIKLLTVIIQYSTATPFKWHANKFMCFYCSCPFEHSTTLIQHTKEEHEDAKLRTILRSTVTKSRSIKLDVRDLFCKKCDIPIQNLQDLISHMREKHGLKLDKEVTHCIYPYVLSESDMSCLECAMPFRFFGPLLIHTHKYHSKTKQFLCEHCGQGFIARANVDSHIRNAHPDLCTFQCKECEEIFPSSYKLNHHVEKSHGPARMKCPKCPEILTSSYLKKRHLAFVHDVKSAQFQCDMCPKIFTLKNSLLAHKQRVHLKEKNFACEIYQKPKTHDIRVPTQEDWQLAASRRYVHTVLSNSTLMPFRWRGNRYICFYCYQTFHDATSLRTHTRGSHKSVAIMKHLTQNRTSEFTPIKVDVGEPLACLKCKHQEITLEGLLAHLKEHKLIADMEQECFLPFKLADNQISCQKCAKSYQFFGMLYSHMNKVHLEGTKRICETCGQNFFSDFSLRKHVQIHHQSADFKCNHCDASFKLDSNRISHEFKEHNIKTFKCYKCNEMFGSQYLRRLHMNGTHLKADFTCTYCSKAFLHKSLLARHINRVHLKEKKFVCPICQEGFFDLPTLNLHTKKHSKIAQVISLQCKVCMRTYSNKIELDDHMTTHSGQSLSTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -