Axyl023989.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387371.1:797201-811815[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00028 0.021 16.1 1.5 1 23 215 237 215 237 0.96 2 12 0.038 2.8 9.4 3.2 2 20 244 262 244 265 0.94 3 12 0.36 26 6.3 4.0 1 23 269 291 269 291 0.91 4 12 8.9e-05 0.0065 17.6 2.2 1 23 296 319 296 319 0.98 5 12 1.2 87 4.6 0.0 3 11 326 334 325 347 0.78 6 12 0.0005 0.037 15.3 0.0 2 20 358 376 357 378 0.94 7 12 1.6 1.2e+02 4.2 0.0 3 23 390 411 388 411 0.88 8 12 0.00031 0.023 15.9 0.8 2 23 417 439 417 439 0.94 9 12 9e-05 0.0066 17.6 0.1 2 23 462 483 461 483 0.96 10 12 1.3e-05 0.00095 20.3 6.1 1 23 489 511 489 511 0.99 11 12 8.5e-07 6.2e-05 24.0 0.8 1 23 517 540 517 540 0.97 12 12 0.082 6 8.3 0.0 2 23 546 567 545 567 0.94
Sequence Information
- Coding Sequence
- ATGAACGATGTTAAGACTATCAACAGAAATTCACACAAACTAACAAACAATCTAACACGGAACAAAGTATTCGAATTCGGAACTGACCCACTATTGACAGTACCGCCACAAATAAAAACTGAAGACGATGAAAATACACGCGAAGTGACCGCTTTTGTAGAAGTAGAATGTATAAGAAGGAGAGATTCTATAAAAAACGATGTTGATCCGCAAACTTTCGAAGTACCAATAGAAAAGCAAGAAGTGAAAGAAGTTAAATTAGTCAAATTAAAAACAGAGAATGCTAACGCTCACTCAGACGCTGATTACATGGAGTCTGAAGTGAAGAATGATACCAGCGATGACGATACCGACACGTCAGAGGAAACGCTAGCCGCTGTTAAGAGAGGCAAAAGGAAAAGGGTAAAAGCGGAAAAAGAGAACACTAAATATTCAAAGAAATGTAAAAACGTTAAAACTAAAGCTGATGATTGCCCCAAAGATAAAGAGGCACCAAAAACGAGAAGACTTAGGAAAAAGGTCGGTGTTAAAACAGATACTGAATCGGCGTTTGAGAAAAAGTTTAATTGTAAAACTAGACTTTTGAGTAAGGAGGAACAGAAGCAGGATGTGGAGGAGCGAAAGAGGAACAATAAGTCAGCGTACAGCTGCGACTTGTGCGGGAAGGGGTTCAAGAAGGAAAACACATTGATGACCCACAAAAGCTACCACGACCCGAGTCTGCCGGCGGAGTGCGACGTGTGCCGGCTGCGTTTCCGGTCGCGGCGCAGCCTGCTGAAGCACCAGGACTGTCACCGCGCCATCTTCACGTGCAACCAGTGCGGGAACGTCTCCCGGAACAGGTCGCACGCCAAAGACCACTGCCTCATGCACAAGGGCACGACCTACACATGCCCGTACTGCCAGATCGTGTACAACCACCAGACGTCGTACTACAACCACATCCGCGTCCAGCACCCCGGCCAGAACGAGGCCTGCGACGAGTGCGGGGAAACCTTCGCCGCGGGGAGGGGCATGATGCTGCATAAAGCGCTGACGCACAAACAGAATGTCAAACCAAACGTAGACACCAAGTGCGCAGTCTGTGATGTCAAGTTTTCGAGCCCCGAAGCGCTCCAAAGGCACTTGGAGCTGAGTGTCGGCGTGCCGCATGCGGCGCTGTGGCCCTGTGCCGCATGCGGCGAGACCACAGGCAGTGAGGACGCCCTCGCCGCACATACCGCAGAGAGGCATCCGCCCGAACAGAGATACTGTCAAGAGTGCAACAAGACGTTCTCTAACGCTGCGTCGTTCTCGCTGCACGTGGAGCGGAAACACAAGAACCAGCGCGCGGTGGAGGCGCCGTTCCGGCCGCGGCCCGGCATCGGCCGCGTGCGCTCCACCGTCTGCGAGATATGCGGCAAGGTGTACCAGAACCTGACGATGCTCCAGTACCACATGAACGGGCACCTCTCGGTGAAGCCGTTCCAGTGCCCGCACTGCCCCAAGGCGTTCACCCACCAGAGCAACCACAGGTTGCATATGAGGGTACACACGGGCGAGCGGCCCTACCAGTGTGAGCAATGCCCACTGGCTTTCTCCAGGCGGGGCAACTTCACGAAACACATGAAGAACGTACATTTACGAGTGCAGGTAAAGTGCGACACGTGCGGTAAGATGGTGGGCGCCGGCTCTCTCACCTCGCACGTCCGCGCCGTGCACTTGCGGCAGCCGTACGTGCGCCGGAAAAGGGACCGCACCGCCGAAAAGAAGCTGCTGCTTGGCCAATCGTAA
- Protein Sequence
- MNDVKTINRNSHKLTNNLTRNKVFEFGTDPLLTVPPQIKTEDDENTREVTAFVEVECIRRRDSIKNDVDPQTFEVPIEKQEVKEVKLVKLKTENANAHSDADYMESEVKNDTSDDDTDTSEETLAAVKRGKRKRVKAEKENTKYSKKCKNVKTKADDCPKDKEAPKTRRLRKKVGVKTDTESAFEKKFNCKTRLLSKEEQKQDVEERKRNNKSAYSCDLCGKGFKKENTLMTHKSYHDPSLPAECDVCRLRFRSRRSLLKHQDCHRAIFTCNQCGNVSRNRSHAKDHCLMHKGTTYTCPYCQIVYNHQTSYYNHIRVQHPGQNEACDECGETFAAGRGMMLHKALTHKQNVKPNVDTKCAVCDVKFSSPEALQRHLELSVGVPHAALWPCAACGETTGSEDALAAHTAERHPPEQRYCQECNKTFSNAASFSLHVERKHKNQRAVEAPFRPRPGIGRVRSTVCEICGKVYQNLTMLQYHMNGHLSVKPFQCPHCPKAFTHQSNHRLHMRVHTGERPYQCEQCPLAFSRRGNFTKHMKNVHLRVQVKCDTCGKMVGAGSLTSHVRAVHLRQPYVRRKRDRTAEKKLLLGQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -