Axyl001018.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387370.1:4304531-4311123[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.002 0.15 13.4 7.3 1 23 35 58 35 58 0.97 2 11 3.1 2.2e+02 3.4 0.1 1 9 66 74 66 88 0.75 3 11 2.9e-05 0.0021 19.2 3.3 2 23 94 116 94 116 0.97 4 11 6.3e-06 0.00046 21.2 0.5 1 23 122 144 122 144 0.96 5 11 2.6e-05 0.0019 19.3 0.6 1 23 150 172 150 172 0.97 6 11 0.00032 0.024 15.9 0.7 1 23 178 201 178 201 0.93 7 11 3.3e-05 0.0024 19.0 0.7 1 23 213 236 213 236 0.96 8 11 0.00019 0.014 16.6 1.8 2 23 272 294 272 294 0.95 9 11 7.5e-05 0.0055 17.9 5.2 1 23 300 322 300 322 0.97 10 11 3e-05 0.0022 19.1 1.7 1 23 328 350 328 350 0.97 11 11 0.00023 0.017 16.3 1.1 1 23 356 379 356 379 0.98
Sequence Information
- Coding Sequence
- ATGGATGATAGTTTAGCTTTTGCCCATAATTTCATTCGCGTAGGGGGAACGGATTCGATCGAAGTGTGCACGATATCGCAGAACGCCGACGGACTCGAAACGTTCACATGCCTCGAATGCGATCGCTCGTTCTTCACCAAGGATTGCTTCACTCAACACTACAGGCATATACACCTCAAGCTTCGCCCTAGCACTTACCCTTGCCCGATCTGCAAGGAACCTCTACCCCCCTACAAGAGGTCGGAGCACATGGAAGCGAAGCACGGCCGGCCAGCGCCGACTTGCAACATTTGCGGGAAGAAATTCCCCCATCCACATTTCGTTCTACGTCACCAAAGAACTGTACATATGGGCGAGAAGAACTACAAATGTGATCTATGCGACAAGTCCTTCCCTGAACGAACGAGTCTAAAAAGGCATGCGTTAGCTCATACGGACATAAGGGACTACGCATGCGAACTCTGCGGGAGAAGATTTAAATGGAAGAAGAACTTGCAAACTCACATGGACATACATATGAATGTGCGTCGGCATGTTTGCGCGGTCTGTGGACAGACTTTCGTGCAGCTCAGCGGTCTGAAGTACCACAAGGACAGTCGGCATCCCGAGACCCGGAACGAGGACGGCTCACTAAAGTTCAGTTGTAACATCTGCGACCGCTCCTTCAGGCTCTGGGGGCAATTCCTACAGCACTACAACCAAGTCCATCTAAAACTGAGGAAGAAAACACACCCTTGCGTCATCTGCCACCAACAACTAATACCGAGACATCGGTCTAAGCATATGGAAGAAGAACACGGCTGGCCAGCGCCAACTTGCGGCGCTTGTGGAAAGAAGTTCTCCTACCCTCATCAGGTCACGAAACACCAGAAAATATTCCATATGGGAGAGAAGAATTATAAATGTGATCAGTGCGACATGTCTTTTTGTACACAGAAGAGTCTGAAACAACACGAGTACAGGCATTCTGACGCGAGGGACTTTAATTGTGAATTTTGCCCGAAGGCTTTCAAGACGCTGAAATATTTGAGGTTGCACACGAAGATACATTTGAATGATAGGAGATACGTGTGCTCTGTGTGCCAGGAAGCGTTCGTGCAGATGACGAGTTTGAAGTATCATAAGAGACGGCGGCATCCTGAAGTGTTATAG
- Protein Sequence
- MDDSLAFAHNFIRVGGTDSIEVCTISQNADGLETFTCLECDRSFFTKDCFTQHYRHIHLKLRPSTYPCPICKEPLPPYKRSEHMEAKHGRPAPTCNICGKKFPHPHFVLRHQRTVHMGEKNYKCDLCDKSFPERTSLKRHALAHTDIRDYACELCGRRFKWKKNLQTHMDIHMNVRRHVCAVCGQTFVQLSGLKYHKDSRHPETRNEDGSLKFSCNICDRSFRLWGQFLQHYNQVHLKLRKKTHPCVICHQQLIPRHRSKHMEEEHGWPAPTCGACGKKFSYPHQVTKHQKIFHMGEKNYKCDQCDMSFCTQKSLKQHEYRHSDARDFNCEFCPKAFKTLKYLRLHTKIHLNDRRYVCSVCQEAFVQMTSLKYHKRRRHPEVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -