Basic Information

Insect: Archips xylosteana
Gene Symbol: prg
Assembly: GCA_947563465.1
Location: OX387343.1:11256057-11257855[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.47 34 5.9 3.4 1 20 174 193 174 197 0.83

2 10 0.00096 0.07 14.4 0.7 1 23 203 226 203 226 0.96

3 10 4.2e-06 0.0003 21.8 3.6 1 23 232 254 232 254 0.96

4 10 4.9e-07 3.5e-05 24.8 4.9 1 23 260 282 260 282 0.99

5 10 0.00061 0.044 15.0 0.9 1 23 288 310 288 310 0.97

6 10 0.0011 0.077 14.2 0.5 1 23 316 338 316 338 0.95

7 10 0.0001 0.0075 17.4 1.0 2 23 429 451 428 451 0.95

8 10 3.9e-05 0.0028 18.8 2.9 1 23 457 479 457 479 0.96

9 10 3.7e-06 0.00027 22.0 3.6 1 23 485 507 485 507 0.98

10 10 0.0017 0.12 13.6 0.0 3 23 516 536 514 536 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.47	34	5.9	3.4	1	20	174	193	174	197	0.83
2	10	0.00096	0.07	14.4	0.7	1	23	203	226	203	226	0.96
3	10	4.2e-06	0.0003	21.8	3.6	1	23	232	254	232	254	0.96
4	10	4.9e-07	3.5e-05	24.8	4.9	1	23	260	282	260	282	0.99
5	10	0.00061	0.044	15.0	0.9	1	23	288	310	288	310	0.97
6	10	0.0011	0.077	14.2	0.5	1	23	316	338	316	338	0.95
7	10	0.0001	0.0075	17.4	1.0	2	23	429	451	428	451	0.95
8	10	3.9e-05	0.0028	18.8	2.9	1	23	457	479	457	479	0.96
9	10	3.7e-06	0.00027	22.0	3.6	1	23	485	507	485	507	0.98
10	10	0.0017	0.12	13.6	0.0	3	23	516	536	514	536	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCTTATATTATTGCAAATTTCCACATGTTATGTCGCCTCTGCTTGAGCAAGAGCTCTTTAATGGTGTCCATTTTCGGTGCCGCTCCTGATGATGAAAACAATTTGACATTAACCTCTAAAATCGCCGAAATTGCTGAGCTTCAGATGGATCCTAATGATGGCCTACCAGGAAGAATCTGTTACAAATGCTTGTTTAAACTGGACAAATGTTCCAAGTTCAGAGTGCAATGTATTCAGAATGAGACAAGGCTGAGGCAAATCACAAACCGTGTCAATGAACAAGACAATTCAAATTCATCAGAATTAGACACTTACAATTACCCCAACGCTCAAGAGCCCCACAAACAAGAGTATATAGTGGAAGATAGTGTGGTCATGGTAGTAGACCCAAGTTTAGACTATGATTCTTCGGAAGACTCTGACAATGCGGATCAAGCAGATATGGATGTTACAGAAAGGGATAACACCCCTGAAGGAGACCCAATGCCCGAGTCTTTCTTCAAAAATGTATTTATGTGTCAGTATTGTGATCAGGCTTTTATTTCACAAGAAAAGTGTAAGGAGCATGAACATGCATATCATGATCCCAATTTGCCTTTTAAGTGTACAGAGTGTAGTCTGGTGTTTCCTGAACGGAGCCAGTATGTGCAGCACACAAAGCAAGTGCATGGTAATGACAAACCATATCACTGCCCTGAATGTGATAAGTGTTTTGGACGCAGATCTGATTTGAGAAAGCATTCTATTGTCCATACTGGCATCAGGCCCTATCAGTGTCACTACTGTCTCAAAAGTTTCTCCCGCAACACTAATCTTAGTAAACATCTTAGGATACATGCAGGTCACAAGCCTCATGTGTGCCCACTCTGCCCGAGGAGCTTTGTTTGCAGAGGAGAACTACAGCGTCATGTTTTAGTTCATTCTGGTATGAAACCATATGCATGCCGAAAGTGTCCTTTGACTTTTGGGCGGAGAGATAAACTTATCAAGCATGAGGTCAGACATGGCCCTGCTGCCTCAAGCGGAGCACATGACATTGATAATGAACAAGAAAGCCAAGACATGGTTGTTAGTGTTAACCCTTACAGTAATCTTTTGACTTCTCCGACCCACCCAAATTCTGATTATGATCTACCTCGAGTTCCGGACCACATTGCAGGAGTGGGCAGTTTCATGAACCAAATACACAAGACCCCATCCACCTCCAGCAAACTACCACTCTCCCCACCAAAACCAAAAACTGTAGTGTCTAACAAAAACAAACCCAAAAATATAAAATGCCATCAGTGTCCAAAGAAGTTTTCTTCATTAGACGCATATAAGACTCATGTGTCCATAGCTCACATTGGCTCAAGAGGGTTCCAATGCAAAATTTGTTTCAAGAAGTTCTCTCGCAAAAGAGAATTGGACCGCCACGTGACCTTACACTCCGGGATGAAGCCTTTTTCATGCAGCCAATGTGACAAAAAGTTTAATAGGAAAGATAAACTCAATAAACATGAGCAAACTCATGAATGCTTGGTTGTGAATATGCCTTGCATAGAATGCGGTGTCACCTTTGAGAAAAAAGCTGATCTAGTGGCCCATATTAAGTCGCATTTCACTGATAATTATGATGATAAGCCTGAGATCAAAAAGGAGGATGATCAGGAATACCCAGTGGATGAGAATTACTATGACCTGGAAACCTGA
Protein Sequence: MEDSYIIANFHMLCRLCLSKSSLMVSIFGAAPDDENNLTLTSKIAEIAELQMDPNDGLPGRICYKCLFKLDKCSKFRVQCIQNETRLRQITNRVNEQDNSNSSELDTYNYPNAQEPHKQEYIVEDSVVMVVDPSLDYDSSEDSDNADQADMDVTERDNTPEGDPMPESFFKNVFMCQYCDQAFISQEKCKEHEHAYHDPNLPFKCTECSLVFPERSQYVQHTKQVHGNDKPYHCPECDKCFGRRSDLRKHSIVHTGIRPYQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVCRGELQRHVLVHSGMKPYACRKCPLTFGRRDKLIKHEVRHGPAASSGAHDIDNEQESQDMVVSVNPYSNLLTSPTHPNSDYDLPRVPDHIAGVGSFMNQIHKTPSTSSKLPLSPPKPKTVVSNKNKPKNIKCHQCPKKFSSLDAYKTHVSIAHIGSRGFQCKICFKKFSRKRELDRHVTLHSGMKPFSCSQCDKKFNRKDKLNKHEQTHECLVVNMPCIECGVTFEKKADLVAHIKSHFTDNYDDKPEIKKEDDQEYPVDENYYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00149713;
90% Identity: iTF_00155553;
80% Identity: -