Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387370.1:2775875-2798345[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.5e-06 0.00018 22.5 0.6 2 23 108 129 107 129 0.97

2 11 3.5e-05 0.0026 18.9 2.3 1 23 135 157 135 157 0.99

3 11 0.036 2.6 9.4 4.3 1 23 212 234 212 234 0.96

4 11 3.7 2.7e+02 3.1 0.0 2 23 242 263 241 263 0.94

5 11 0.00079 0.057 14.7 2.2 1 23 269 291 269 291 0.95

6 11 0.00016 0.012 16.8 1.2 1 23 297 319 297 319 0.96

7 11 0.00037 0.027 15.7 2.1 1 23 328 350 328 350 0.98

8 11 8.7e-05 0.0063 17.7 0.6 2 23 397 418 397 418 0.97

9 11 0.02 1.4 10.2 6.2 1 23 435 457 435 457 0.95

10 11 7.8e-07 5.7e-05 24.1 0.7 1 23 463 485 463 485 0.98

11 11 3.6e-07 2.6e-05 25.2 3.1 1 23 491 514 491 514 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.5e-06	0.00018	22.5	0.6	2	23	108	129	107	129	0.97
2	11	3.5e-05	0.0026	18.9	2.3	1	23	135	157	135	157	0.99
3	11	0.036	2.6	9.4	4.3	1	23	212	234	212	234	0.96
4	11	3.7	2.7e+02	3.1	0.0	2	23	242	263	241	263	0.94
5	11	0.00079	0.057	14.7	2.2	1	23	269	291	269	291	0.95
6	11	0.00016	0.012	16.8	1.2	1	23	297	319	297	319	0.96
7	11	0.00037	0.027	15.7	2.1	1	23	328	350	328	350	0.98
8	11	8.7e-05	0.0063	17.7	0.6	2	23	397	418	397	418	0.97
9	11	0.02	1.4	10.2	6.2	1	23	435	457	435	457	0.95
10	11	7.8e-07	5.7e-05	24.1	0.7	1	23	463	485	463	485	0.98
11	11	3.6e-07	2.6e-05	25.2	3.1	1	23	491	514	491	514	0.98

Sequence Information

Coding Sequence: ATGGAGGAGTCGGGAGCGAGTCTGGCGATGGAGACGCCACTAGCGACGTCGACGATCGCGATCGCGACGACGTCAAGGATGAGAGGTGAGCGACTGGTAGTATACTGGAGTAGAGGGGAGGGTAGAGATGGAGGAGTCGGGAGCGAGTCTGGCAATGGAGACGCCACTAGCGACGTCGACGATCGCGATCGCGACGACGTCAAGGATGAGAGCATGTCAGACGAAGACTACTTCCCCTCCAACACCTGGGCGGAGCCTCCCAAGATGGAGCCCTGCCCGTCGCCCCCCCGCGGGAGGCGGCCCAAGCAGGAGGGCCCCCTGACTTGCAAGATATGCGACAAGAGCATCAGTACCGCGTCGTACATGCGCATACACATGCGCACGCACACAGGCGAGAAGCCGTACAAGTGCTACGTGTGCGGGCGGGGCTTCATCACCAGCAGCAAGATGCATCGGCACGTGCTGACGCACTCAGAGACATGGGAGAAAGACGGTGTCAAAGTGGAGGGGGCCGACGTCAAAGAGGAGGCCGACGCGGACGCGCAGGGGGGCGACGGAGGGGACAAAGACGTAACAAAAAAACCGCGAAAGAAGCGCGTGGTTAAGAAAAAACGCGACTACCAGAAACGGCCGCACGCCTGCGAGTACTGCCAGAAGCGCTTCCTGCACCTCGAGATGTTGCAAGTGCACAAGAAGAGTCACGAGGGCGAGGACGCGGTGTTAAAGTGCTATTACTGCCTCGTGGACGTCGTCGACGAGGCGGGGTTGAAGGAGCACGAAGCGACGCATTCCGGCCCGAAGCCGTTTTTATGCACGCTCTGCGGGAAGAGTTACAAACGGAGGGAGACCATGGTATACCACCGCAAGAACCACAAGTCCGAGAAGAAGTTCATCTGCGACATCTGCTCCAAGACCTTCAACGCGCCCTGCAAACTGCAGCGGCACATCGTCAGCCACCGCGCAGACAAGTTCGTGCTGCGCTACGAGTGTCCGGTCTGCGCACACATGTTCAACACTAAGTACCACGTGCAAATGCATCTGGCGACGCACCAGAAGGAGGGGCTCATCTTGGAAGAGAACCGCAACGACATACTCGCCATGGTTCTGCAGAATGCGCGCAAGATACCGAAACAGGGCGACGCGCCGACCAACCTCTCCGACCTCATACCGGCGGACGAGCGCAGCCGCGTGTGCAACATATGCGGGGAGGTGTTCCAGCACTTCTACTATTTAGAAGAACACCTCAAGAGCCACGGCTCCAGGATAGCCATCGAAGACGAGAACAAGCCAGAAGAGCGGAAACATATCTGTCAGGTATGCAACAAGAGCTTCAAACTGCACTACTACCTAAAACTCCACAGTTTCACGCACACAAAGGAAAAACCCTACATCTGCCAGCAGTGCGGCAAAGGTTTCATCACCAAAGGTAAACTGAAACGGCACCTCGAGACCCATTCCGGCCTGAAGAAGTACCAGTGTCACATTTGCTACAAGTTCTTCACCAGACCCAGTTATCTCCGTATCCATGTTAGGACAATACATGGTAACCAGGATTATAACTTCAGAGTGGGCAAGGAGTTTGGTATAGCGGCGCCGTTGAACGCTCTGTCGGTTATGACGCAGTATAGCGAGTAG
Protein Sequence: MEESGASLAMETPLATSTIAIATTSRMRGERLVVYWSRGEGRDGGVGSESGNGDATSDVDDRDRDDVKDESMSDEDYFPSNTWAEPPKMEPCPSPPRGRRPKQEGPLTCKICDKSISTASYMRIHMRTHTGEKPYKCYVCGRGFITSSKMHRHVLTHSETWEKDGVKVEGADVKEEADADAQGGDGGDKDVTKKPRKKRVVKKKRDYQKRPHACEYCQKRFLHLEMLQVHKKSHEGEDAVLKCYYCLVDVVDEAGLKEHEATHSGPKPFLCTLCGKSYKRRETMVYHRKNHKSEKKFICDICSKTFNAPCKLQRHIVSHRADKFVLRYECPVCAHMFNTKYHVQMHLATHQKEGLILEENRNDILAMVLQNARKIPKQGDAPTNLSDLIPADERSRVCNICGEVFQHFYYLEEHLKSHGSRIAIEDENKPEERKHICQVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITKGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHVRTIHGNQDYNFRVGKEFGIAAPLNALSVMTQYSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -