Axyl024270.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387371.1:5192060-5196085[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0022 0.16 13.2 0.4 2 22 166 186 165 186 0.95 2 18 0.62 45 5.5 0.1 1 20 210 229 210 231 0.84 3 18 0.24 17 6.9 0.1 2 16 266 280 265 282 0.85 4 18 0.00017 0.013 16.7 2.1 1 23 293 315 293 315 0.99 5 18 1.1 77 4.8 2.4 1 14 317 330 317 331 0.90 6 18 0.00014 0.01 17.0 2.8 1 23 334 356 334 356 0.98 7 18 3e-05 0.0022 19.1 2.4 1 23 365 387 365 387 0.98 8 18 0.0045 0.33 12.3 1.0 1 23 393 415 393 415 0.97 9 18 0.11 8.3 7.9 5.2 1 23 423 445 423 445 0.97 10 18 0.00013 0.0097 17.1 4.9 1 23 451 473 451 473 0.98 11 18 5.2e-05 0.0038 18.4 0.9 1 23 478 500 478 500 0.98 12 18 0.016 1.2 10.6 0.9 1 21 506 526 506 527 0.94 13 18 7.9e-05 0.0057 17.8 4.1 1 23 535 557 535 557 0.98 14 18 0.0064 0.46 11.8 1.3 1 23 563 585 563 585 0.98 15 18 0.00018 0.013 16.7 2.6 1 23 591 613 591 613 0.98 16 18 0.0039 0.28 12.5 5.2 1 21 619 639 619 640 0.94 17 18 0.0026 0.19 13.0 2.4 1 21 647 667 647 668 0.93 18 18 0.012 0.89 10.9 0.1 1 23 697 719 697 719 0.92
Sequence Information
- Coding Sequence
- ATGAGGAATTCAAACGAGCCGTCGCGGTGGGGGCCTGGAGCGCTCAGAGCACGAGTCAAGCAGGAGCCGCCTCAGCCGCCCGACGACGCCGCGGTGCCGCCAGGTCAGCTCTCCCTGCTCTGCTTGTCCGTGCGGCCCGGTGCGGCTGGGGCTGCCATGCTGTCCCCAGTTGACCGAGCAGAGTCGACCACGGTGAAGCAGGAGTGCAGTGCCGCGGCAACTGACGCCTTGGAAGACTCTTGCGCCAGTAGCGACTGTTCGGGAGAGTACCTGCTTGGGGAGCCAGCAGCTCCTGCCCGGTGCAATGTAGAGCTCTCTATGTTCAAAGTTAGGCCTTGTGCTGTCCGCCTCGAGCGCACCCAAGTGGACAAGTACTCCACAAGCACGCCACGCGCTCTGCCACGCCCCAGGTTACACAATAACACCCATGAACCTAACTTTACTACTGAAGCGAGTCAAACACCCATGAAAACTCATTTGCAAAGGAAAATATTGTCATGTGACAGTTGCAGCGCACAGTTCACACAAAAAGATAAATTAATTAAACATTTAAGAACATGCTCAAGTCAGATTTGGCAAGGATCTAAAAAGCCCTCATCCAGTAGAAGTATCAGAAAAGAAAAACCATTCTCTTGCAATCTCTGTCCAAAACAGTTTCTGTCAGAAGCCCGCTTGGCTGTGCACAGACAGGCCTGCCCCCAAGAGACGGGACAGCCACTCAACAGGTGTGACGCTTGTATCGGACCGTCACAACGCCAGCTCATCCACATTCCTTGCACACAGGAGAAATCTCTCTCTTGTGACATTTGTGGAAAAAAATATGTGGAAAAATATTACTTTGCTGCTGACATGCAGTCTCTTGTGGAGGAGAAACTTTATAAATGTGATGTGTGTACAGAACAGTTCTCACTAAAACGTTCCTTGGCTAAGCACAAGAAGACACACACTTACTGCTGTGATACTTGCAGCAAAATATTCAGCAACAGTGGAGAGCGACCTTACCACTGCGACGTTTGTCAGAAGTGGTTCACGGATAAAAATACTCTGAATAAGCATATGGAAACTCACAAGTCTGCCATGATGAAAAAAGGTTACTGCTGCGATATTTGTAACAGAATATGCAGAGACAAGTCTGCATTAGTTGTCCATATCCGTAGTCACACGGGGGAGAAGCCTTACAGCTGCGATCTCTGTCATAAGCGGTTTGCTGCTAAAGGTGTACTTAAACTCCACAAACTGATCCACGCAGGGCCAGGGGAGAAACCTTACAGCTGCGATGTCTGTCATAAGCGGTTTGCTGCTACACATCAACTTAAATTCCACAAACGGATCCACACAGGGGAGAAACCTTACAGCTGCAATGTCTGTCAGAAGCAGTTTAAATACAGTTCGTCCTATAATTATCATAGACGCAAGCATACAGGAGAACAGTACAGCTGTGATATCTGTCAGAAACAATTCATGTCTTTGTGGCTCTTAACTCGACATAAACGCATCCACACGGTAGAGCTACCTCACTACTGCAATGTCTGTCAGAGCCGGTTCATGGATACAACTGCTCTGAATAGGCATATGGAGAAGTGTGCTATGATGAAAAACCGTTACTGCTGCGGTATTTGTAACCAAACATGCAGAAATAAGTCTACATTAGTTGTCCATATCCGTAGTCACATGGGGGAGAAGCCTTACAGCTGCGATCTCTGTCATAAGCGGTTTGCTGCTACAGGTGTACTTAAACTCCACAAACGGATCCACACAGGGCAAAAACCTTACAGCTGCGATGTCTGTCATAAGCGGTTTGCTGCTAAACAATCACTTAAACTCCACAAACGGATCCACACAGGGGAGAAGCCTTACAGCTGCAATGTCTGTCACAAGCAGTTTACGAACAGTTCAAGCAATAGTCGTCATAGATGCAACAATACGCGGGAACAGCGATATTGCTGCGATGTCTGTCAGAAGCAGTTCACGTCTAGAAATGCACTTGAGAATCATTTTAAGCAGACATTTTGCAGAATCTGTCAACAACAGTTTGCTTGCCGCGGGTCTGTGAAAGCGCACAAACAAAACCAGCACAAAATGGCACTCTTTCTTTGTGCTGTTTGCAAAATACAGTTTCCGAATAAGAAGATGCTGGTGCGGCACGTGGGGATTCACCTGTGGGCGCCGCAGGACGCGCTGGGCGCCGGTGGGAGCCAAGACCGATAA
- Protein Sequence
- MRNSNEPSRWGPGALRARVKQEPPQPPDDAAVPPGQLSLLCLSVRPGAAGAAMLSPVDRAESTTVKQECSAAATDALEDSCASSDCSGEYLLGEPAAPARCNVELSMFKVRPCAVRLERTQVDKYSTSTPRALPRPRLHNNTHEPNFTTEASQTPMKTHLQRKILSCDSCSAQFTQKDKLIKHLRTCSSQIWQGSKKPSSSRSIRKEKPFSCNLCPKQFLSEARLAVHRQACPQETGQPLNRCDACIGPSQRQLIHIPCTQEKSLSCDICGKKYVEKYYFAADMQSLVEEKLYKCDVCTEQFSLKRSLAKHKKTHTYCCDTCSKIFSNSGERPYHCDVCQKWFTDKNTLNKHMETHKSAMMKKGYCCDICNRICRDKSALVVHIRSHTGEKPYSCDLCHKRFAAKGVLKLHKLIHAGPGEKPYSCDVCHKRFAATHQLKFHKRIHTGEKPYSCNVCQKQFKYSSSYNYHRRKHTGEQYSCDICQKQFMSLWLLTRHKRIHTVELPHYCNVCQSRFMDTTALNRHMEKCAMMKNRYCCGICNQTCRNKSTLVVHIRSHMGEKPYSCDLCHKRFAATGVLKLHKRIHTGQKPYSCDVCHKRFAAKQSLKLHKRIHTGEKPYSCNVCHKQFTNSSSNSRHRCNNTREQRYCCDVCQKQFTSRNALENHFKQTFCRICQQQFACRGSVKAHKQNQHKMALFLCAVCKIQFPNKKMLVRHVGIHLWAPQDALGAGGSQDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -