Axyl011812.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387372.1:2586229-2593438[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.34 25 6.4 4.2 1 20 114 133 114 137 0.90 2 12 7.4e-05 0.0054 17.9 3.3 1 23 240 262 240 262 0.97 3 12 0.00032 0.024 15.9 3.4 1 23 272 294 272 294 0.98 4 12 0.00066 0.048 14.9 3.8 1 23 302 325 302 325 0.97 5 12 0.26 19 6.7 0.3 3 23 333 353 331 353 0.95 6 12 2e-05 0.0015 19.6 3.4 1 23 359 381 359 381 0.98 7 12 3.3e-07 2.4e-05 25.3 1.1 1 23 387 409 387 409 0.96 8 12 2.8e-06 0.00021 22.4 1.1 1 23 415 437 415 437 0.98 9 12 8.5e-07 6.2e-05 24.0 0.7 1 23 443 465 443 465 0.98 10 12 0.00017 0.013 16.7 1.4 1 23 471 493 471 493 0.98 11 12 3.6e-05 0.0026 18.9 2.2 1 21 499 519 499 521 0.96 12 12 0.00018 0.013 16.7 0.3 1 23 527 549 527 549 0.98
Sequence Information
- Coding Sequence
- ATGGATAATATTAAATTAGATGCCAGCGCTATATGTAGAACATGCATGTGCGAAGCTGCTGACATGAAATCCGTGTTCCAGAAACACCATGATGAACGGACACTTTCCGACTTAGTTGCGTTTATTACAAATATTACCATTAACAATGATGATAGCCTTCCTAAACAAGTTTGCATTGAGTGCGAAACCTTCCTCAGCAAAGCTAGTACTTTTAAACAACGCTGCTTGGACGTGGAATCTAAGTTAACTAAACTTTTTTCAAAGGAAACATCGTCGAGTTATTCACGAATAAAATCTGAAAAATGTGTGAAAGAGAGTATTATAAGTGTTGAAGAGCCATTTCAGTGCTCAGTTTGTTTCAACAAGTTCACTGACACAACATTACTTGAAAATCATTTTTACGATTGCCATAAATTCAATGACGTGCCATTATTAAATGAAATAACATTGTTCTCTAACGCCAAAGATTTGATTACACTTGAAACTATACCAGAGAAAGAGGAAAACGAAGATGTGAAAAAAGAATTCAATGACTTGGATCAAGACAGTCATTTTGATGAATTTTCAGAACCAAATGATTCTGAATCAATAGTGATAGAATATAGGCCTGAAATAAACGATGTTGAAATTACAAATAATACTCTTAAGACGCCCTTAGATAATAACTACAGTCAAACAATAAGCACATTGCTGTCAGAAAATAAAAAGAATAAAACGCATATGTGTGATAAATGCAACCAAGAATTCAAAACGGCAAACTCTCTTAACATTCATAGAAGGAAACATAATGAAAAAAAGGAAGTTGAGAAGAAACACCAATGTCCGATGTGCATGCGGAAATTCATGAAAAAATCATCCCTAACTAACCATCTACGAATACATGAAGACCGTGCTGAGGCAAAGTACACTTGTGGTAGTTGCAAAAGAGAATTTAAGCATAGAGCTCATTTAGATAACCACATGGTGACTCTGCATGGGAACGAAAAGGGTTTTGGATGCGAATTTTGCATGAAAAACTTCCCAACCCAAGCAAGTTTAGATCTCCATAGGGAATTGCATAAGATCGATAAGAAACACACATGCCAGTATTGTAACAAGGCATTCTACATGTTGTCGACATTGACTGATCATTTAAGGACCCATACGGGCGAGAAACCGTACCTCTGCTCGACGTGCGGCAGAGGTTTTAGCCAGAAGACGAACCTCGCGCAGCACATGCGACGCCATCTTGGATTGAAGCCTTACCCTTGCACGCACTGCGATCAGAGATTCGTATCCAAAGGAGAGTTAGTAGCCCATACGCGTAAGCACAGCGGCGCCCATCCCTTCATCTGCGGCGTGTGCGACCGCGGGTTTACCACCTCCTCCTCGCTGGTCAAACATAAGCGGACGCACAGCGGGGAGCGGCCTTACGCCTGCGATCTCTGCCACATGAGGTTCGCGGCATCCGGTACCTTGAAGAACCACAGACGCACACACACCGGCGAGAAACCGTACCAGTGTTCCTACTGCGAGAAGGCTTTCGTGCAGAAGAATGATCTCGTCTCACACATAAGATGCCACACAGGAGAGCGTCCGTTCGTGTGCAGTGTGTGCGGAAGCTCGTTCCGCAAAGGCTCGGCTCTGCGCAGCCACGCAAAGATGCATGCGCCCGCGCCGCGCGACCACCGCCCCTATTGA
- Protein Sequence
- MDNIKLDASAICRTCMCEAADMKSVFQKHHDERTLSDLVAFITNITINNDDSLPKQVCIECETFLSKASTFKQRCLDVESKLTKLFSKETSSSYSRIKSEKCVKESIISVEEPFQCSVCFNKFTDTTLLENHFYDCHKFNDVPLLNEITLFSNAKDLITLETIPEKEENEDVKKEFNDLDQDSHFDEFSEPNDSESIVIEYRPEINDVEITNNTLKTPLDNNYSQTISTLLSENKKNKTHMCDKCNQEFKTANSLNIHRRKHNEKKEVEKKHQCPMCMRKFMKKSSLTNHLRIHEDRAEAKYTCGSCKREFKHRAHLDNHMVTLHGNEKGFGCEFCMKNFPTQASLDLHRELHKIDKKHTCQYCNKAFYMLSTLTDHLRTHTGEKPYLCSTCGRGFSQKTNLAQHMRRHLGLKPYPCTHCDQRFVSKGELVAHTRKHSGAHPFICGVCDRGFTTSSSLVKHKRTHSGERPYACDLCHMRFAASGTLKNHRRTHTGEKPYQCSYCEKAFVQKNDLVSHIRCHTGERPFVCSVCGSSFRKGSALRSHAKMHAPAPRDHRPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00325664;
- 90% Identity
- iTF_00155530;
- 80% Identity
- -