Axyl021037.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387363.1:18901177-18915558[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 9e-05 0.0066 17.6 0.2 1 23 198 220 198 220 0.98 2 23 0.11 7.8 7.9 0.1 1 23 226 248 226 248 0.91 3 23 0.11 7.8 7.9 0.1 1 23 278 300 278 300 0.91 4 23 0.11 7.8 7.9 0.1 1 23 334 356 334 356 0.91 5 23 0.11 7.8 7.9 0.1 1 23 390 412 390 412 0.91 6 23 0.11 7.8 7.9 0.1 1 23 442 464 442 464 0.91 7 23 0.11 7.8 7.9 0.1 1 23 494 516 494 516 0.91 8 23 0.11 7.8 7.9 0.1 1 23 550 572 550 572 0.91 9 23 0.11 7.8 7.9 0.1 1 23 602 624 602 624 0.91 10 23 0.11 7.8 7.9 0.1 1 23 658 680 658 680 0.91 11 23 0.26 19 6.7 0.0 1 19 710 728 710 730 0.95 12 23 0.11 7.8 7.9 0.1 1 23 762 784 762 784 0.91 13 23 0.11 7.8 7.9 0.1 1 23 814 836 814 836 0.91 14 23 0.11 7.8 7.9 0.1 1 23 870 892 870 892 0.91 15 23 0.11 7.8 7.9 0.1 1 23 926 948 926 948 0.91 16 23 0.11 7.8 7.9 0.1 1 23 978 1000 978 1000 0.91 17 23 0.11 7.8 7.9 0.1 1 23 1034 1056 1034 1056 0.91 18 23 0.11 7.8 7.9 0.1 1 23 1090 1112 1090 1112 0.91 19 23 1 72 4.9 0.1 2 20 1119 1137 1119 1139 0.93 20 23 0.94 68 5.0 0.0 2 22 1143 1163 1143 1165 0.88 21 23 3.8 2.7e+02 3.1 0.0 3 23 1175 1195 1174 1195 0.94 22 23 0.093 6.8 8.1 2.3 1 23 1201 1226 1201 1226 0.91 23 23 0.00094 0.068 14.4 0.0 3 23 1247 1267 1246 1267 0.98
Sequence Information
- Coding Sequence
- ATGTTGGCTGTGTTGCAGGTGTTGCCCTCTGGGCGGCTGTGCGGCGGGTGCGCGCGGCGCGCGGGCGAGGCGCACGAGTGTTGCCCTCTGGGCGGCTGTGCGGCGGGTGCGCGCGGCGCGCGGGCGAGGCGCACGAGTGCTGCGCGGCGCCCCCGCTGGGCTGATGTTGGCTGTGTTGCAGGTGTTGCCAGAGGGGCGGCTGTGCGGCGGGTGCGCGCGTCGCGCGGGCGAGGCGCACGAGTGCTGCGCGGCGCCCCCGCTGGGCTGATGTTGGCTGTGTTGCAGGTGTTGCCAGAGGGGCGGCTGTGCGGCGGGTGCGCGCGGCGCGCGGGCGAGGCGCACGAGTTCAGCGCGGCGCTGGCGGCGCGCGCGGCGCCCCCGCTGGGCGACAAGCTGCGCGCGCTGCGCCGGCGCCTGCACGCGCTCACGCAGCGCATCGACGTCTTCATCGTGGTGGGCGGCGCGGGCGCGCAGGCCGGCTCCTACAGCGAGGAAGACATAATAATGGTGGAGAAGGAAGCCCTGGCGGCGGCCGCGGCGGCCGACGACGAGGAATTGGAGCGCGCGCGCAACGCCCGCGGAGACCACGTCTACCAGTGCTCCGTCTGCCCGCTGTCCTTCCAGCGCGTGTCGGAGTACCGGGCGCACATGGCGTCGCACCCCTCGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCGGCACCGGGCGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCGGCACCGGGCGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCGGCACCGGGCGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCGGCACCGGGCGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGTACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCGGCACCGGGCGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCGGCACCGGGCGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCGGCACCGGGCGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGGTACGTGTGGCGGCACCGGGCGCACATGGCGGCGCACCCCTGGACGCGCTGCACTCGTGCTGGACGTGCGGCGCGCAGTTCGGCACGGCGGCGGCGCTGCGGGAGCACGGCACCGCGCACGCGCCGCCCGCCCCCGCGCGCTGCACGCTGTGCCGCGCCGCGCTCCAGTCGCAAGCGGAGCTCCGGCGGCACCTGGCGTCGTGCCCGGCGCGCTGCCCGGCGTGCGGGCTGCAGTGCGTGGACCGCGCGGCGCTGGCGGCGCACGCGGCGGCGGCGCACGGGCGCGGCGCGGCGCCGCCGCTGCTGTGCCCGGCGTGCTTCGCGGCGCTGGACTCGCCGCAGGAGCTGACGGCGCACGTGCTGCGGCACCGCCAGGCGCGCCAGTTCGTGTGCGGCCACGACGGCTGCATACTGCGCTTCGGGACCAGAAGTAACCTGATGTCGCACATCCGCAAGTGCCACGGCGGCGACGACGCGCCCCCCGCCGCCCCCGCGGCCCCCGCCCGCGCCGACGCCGCCGCCTGCGACGAGTGCGGACGCACGTTCGGGTCGGTGGCGGCCATGAAGCGACACGCGCGCGTGCACCGCGCTGCGCCCGCGCCGACGCTGCAGGAGGAGAACGTGGAGATGCTGATGATGGAGACGGAGGAACTGGAGGGCGAGGTGGAGTACCTGGAGGTGGAAGCCCTCGAGGACGCCGAGTACCTCGCGCCCGCCAAGCCCGACTTACTGCCGCTGCACTAA
- Protein Sequence
- MLAVLQVLPSGRLCGGCARRAGEAHECCPLGGCAAGARGARARRTSAARRPRWADVGCVAGVARGAAVRRVRASRGRGARVLRGAPAGLMLAVLQVLPEGRLCGGCARRAGEAHEFSAALAARAAPPLGDKLRALRRRLHALTQRIDVFIVVGGAGAQAGSYSEEDIIMVEKEALAAAAAADDEELERARNARGDHVYQCSVCPLSFQRVSEYRAHMASHPSDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAAPGAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAAPGAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAAPGAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAAPGAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAHGGAPLDALHSCWTCGAQFGTAAALREHGTAYAPPAPARCTLCRAALQVRVAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAAPGAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAAPGAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAAPGAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQVRVAAPGAHGGAPLDALHSCWTCGAQFGTAAALREHGTAHAPPAPARCTLCRAALQSQAELRRHLASCPARCPACGLQCVDRAALAAHAAAAHGRGAAPPLLCPACFAALDSPQELTAHVLRHRQARQFVCGHDGCILRFGTRSNLMSHIRKCHGGDDAPPAAPAAPARADAAACDECGRTFGSVAAMKRHARVHRAAPAPTLQEENVEMLMMETEELEGEVEYLEVEALEDAEYLAPAKPDLLPLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -