Axyl024067.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387371.1:1983024-1986506[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0032 0.23 12.8 0.2 3 22 183 202 181 202 0.95 2 17 0.28 20 6.7 0.1 1 20 226 245 226 247 0.84 3 17 0.65 48 5.5 0.2 2 16 277 291 276 293 0.85 4 17 0.0018 0.13 13.6 1.8 1 23 304 326 304 326 0.99 5 17 1.1e-06 8e-05 23.6 3.3 1 23 349 371 349 371 0.98 6 17 0.00011 0.0083 17.3 5.4 1 23 380 402 380 402 0.98 7 17 3.4e-05 0.0025 19.0 0.6 1 23 408 430 408 430 0.98 8 17 9.9e-05 0.0072 17.5 4.0 1 23 444 466 444 466 0.98 9 17 1.8e-05 0.0013 19.8 3.0 1 23 475 497 475 497 0.98 10 17 0.00028 0.02 16.1 0.6 1 23 503 525 503 525 0.98 11 17 0.00046 0.033 15.4 3.1 2 23 533 554 533 554 0.97 12 17 4.8e-05 0.0035 18.5 0.4 1 23 560 582 560 582 0.98 13 17 2.1e-05 0.0015 19.6 2.5 1 23 591 613 591 613 0.98 14 17 0.016 1.1 10.6 0.3 1 23 619 641 619 641 0.98 15 17 0.087 6.3 8.2 3.8 1 21 647 667 647 668 0.94 16 17 0.0015 0.11 13.8 2.4 1 21 675 695 675 696 0.93 17 17 0.023 1.7 10.0 0.1 1 23 725 747 725 747 0.91
Sequence Information
- Coding Sequence
- ATGAAACGAAGTTCGAATTTCGCGCTTCGTAGTATAGGGCCAGAACATTCAGCCTTTTTTTTTAATCCGTCGCGGTGGGGCCTGGAGCGCTCAGAGCACGAGGTCAAGCAGGAGCCGCCGCAGCCGCCCGACGACGCCGCGGTGCCGCCAGGTCAGCTCTCCCTGCGCTGCCTGTCCGTGCGGCCCGGTGCGGCTCGGGCTGCCATGCTGTCCCCAGCTGACAGAGCAGATTCAACCACGGTGAAGCAGGAGTGCAGTGCTGCAGCAACTGACGCCTTGGAAGACTCCTGCGCCAGTAACAACTGTTCGGGAGAGTTCCTGCTTGGGGAGCCTGCAGCTCCTGCCGGCTGCAATGTAGAGTTCTCTATGTTCAAAGTCAGGCCTTGCACTGTCCGCCTCGAGCGTATCCAAGTGGATAAGTACTCCACAAGCAAGCCACGCGCCCCGCCACGCCCTAGGTTACACAATAACACCCATGAACTTAACTGTACTAGTGAAGCGAGTCAAACACCCACAAAATCTCATATGCAAAAGAAAATATTGGCATGTGACAGTTGCAGCGCACAGTTCACACAAAAAGATAAATTAATTAAACATTTAAGAACATGCTCAAGTCAGATTTGGCAAGGATCTAAAAAGCCCTCATCCAGTAGAAGTATCACAAAAGAAAAACAATTCTCTTGCAATCTCTGTCCAAAACGGTTTCTGTCAGAAGCCCGCTTGGCTGTGCACAGACAGGCGTGCCAGCCATTCAACAGGTGTGACGCTTGTATCGGACCATCACAACGCCAGCTCATCCACATTCCTTGCACAGAGGAGAAAAATCTCTCTTGTGACACTTGCGGGAAAAAATATGTGGAAAAATATTACTTTGCTGCTGACATGCAGTTTCTTGAGGAAAAGAAACATTATAAATGTGATGTTTGTGCAGAACAGTTCTCACTAAAACATTCCTTGGCTGAGCACAAGAAGACACACACAAGAGACAGCTCTTACTGCTGTGATACTTGCAGCAACATATTCAGACACAGGGGTGAGCGACCGTACCACTGCGACGTTTGTCAGAAGCAGTTCACGGAGAAATCTAATCTGAACAGGCATATGGAAACCCACAAGTCTGCCATGATGAAAAAAGGTTACTGCTGCAATATTTGTAACAGAAAATGCAGAGACAAGTTTAATTTAGCTATCCATATCCGTAGTCACACGGGGGAAAAGCCTTACAGCTGCAATGTCTGTGATAAGCGGTTTGCTCGTACAGGTCCACTTAAACTCCACAAACGCATCCACGCAAGCACAGGGGAGAGCATACATGCAGGAGAGCAACCTTACCACTGCAACGTTTGTCAGAAGCAGTTCATGGAGAAATATACTCTGAATAGGCATATGGAAACCCACAAGTCTGCCATGATGAAAAAAAGTTACTTCTGCAATATTTGTAACAAAAAATGCAGAGACAACTTTAATTTAGCTATCCATATCCGTAGTCACACGGGGGAGAAACCTTACAGCTGCAATCTCTGTGATAAGCAGTTTGCTGGTACAAGTCTACTTAAACTCCACAAACAGATCCACACAAGCACAGAGGAGAAACCCAGCTGCGATGTCTGTCATAAGCAATTCATATCTTTGTGGAAATTAACTCGACATAAACGCATGCATACAGGAGAGCGACCTTACCCCTGCAACGTTTGTCAGATGCGGTTCATGGAGAAAACTGCTCTGAATAGGCATATGGAAACCCACAAGTCTGCCATGATGAAAAAAGGTTACTGCTGCGATATTTGTAACAAAAAATTCGTAGACAAGTTTTATTTAGTTATCCATATCCGTAATCACATGGGAGAGAAGCCGTACAGCTGCGATGTCTGTCTTAAGCGGTTTGCTGCTACACGTGTACTTAAAGCCCACAAACGAATCCACACGAGGGAGAAACCTTACAGCTGCAATGTCTGTCTGAAGCAGTTTAAGTACAGTTCAAACAATAGTAGTCATAGATGCAACAATACGCGGGAACAGCGATATTGCTGTGATATCTGTCAGAAGCAGTTCACGTCTAGAAATGCACTTGAGAATCATTTTAAGCAGACATTTTGCAGAATCTGTCAACAACAGTTTGCTTGCCGCGAGTCTGTGAAAACTCACAAACAAAACCAGCACAAAAAGGCACACTTTCTTTGTGCTGTTTGCAAAATACAGTTTCCGAATAAGAAGATGCTGGTGCGGCACGCGGGGATTCACCTGTGGGCGCCGCGGGACGCGCCGGGCGCCGGAGGGAGCCAAGACCGATTAATCATAGTTTAA
- Protein Sequence
- MKRSSNFALRSIGPEHSAFFFNPSRWGLERSEHEVKQEPPQPPDDAAVPPGQLSLRCLSVRPGAARAAMLSPADRADSTTVKQECSAAATDALEDSCASNNCSGEFLLGEPAAPAGCNVEFSMFKVRPCTVRLERIQVDKYSTSKPRAPPRPRLHNNTHELNCTSEASQTPTKSHMQKKILACDSCSAQFTQKDKLIKHLRTCSSQIWQGSKKPSSSRSITKEKQFSCNLCPKRFLSEARLAVHRQACQPFNRCDACIGPSQRQLIHIPCTEEKNLSCDTCGKKYVEKYYFAADMQFLEEKKHYKCDVCAEQFSLKHSLAEHKKTHTRDSSYCCDTCSNIFRHRGERPYHCDVCQKQFTEKSNLNRHMETHKSAMMKKGYCCNICNRKCRDKFNLAIHIRSHTGEKPYSCNVCDKRFARTGPLKLHKRIHASTGESIHAGEQPYHCNVCQKQFMEKYTLNRHMETHKSAMMKKSYFCNICNKKCRDNFNLAIHIRSHTGEKPYSCNLCDKQFAGTSLLKLHKQIHTSTEEKPSCDVCHKQFISLWKLTRHKRMHTGERPYPCNVCQMRFMEKTALNRHMETHKSAMMKKGYCCDICNKKFVDKFYLVIHIRNHMGEKPYSCDVCLKRFAATRVLKAHKRIHTREKPYSCNVCLKQFKYSSNNSSHRCNNTREQRYCCDICQKQFTSRNALENHFKQTFCRICQQQFACRESVKTHKQNQHKKAHFLCAVCKIQFPNKKMLVRHAGIHLWAPRDAPGAGGSQDRLIIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -