Axyl001571.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387370.1:12322592-12332706[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.029 2.1 9.7 0.3 2 22 149 169 148 169 0.95 2 15 0.095 6.9 8.1 0.3 1 21 193 213 193 214 0.94 3 15 1.1 82 4.7 0.3 2 15 252 265 251 268 0.81 4 15 5.6e-05 0.0041 18.3 6.5 1 23 279 301 279 301 0.99 5 15 7.1e-06 0.00052 21.1 5.0 1 23 307 329 307 329 0.98 6 15 7.8e-05 0.0057 17.8 3.9 1 23 335 357 335 357 0.98 7 15 1.8e-05 0.0013 19.8 0.7 1 23 379 401 379 401 0.97 8 15 0.00056 0.041 15.1 0.3 1 23 407 429 407 429 0.97 9 15 0.12 8.6 7.8 8.7 1 21 438 458 438 460 0.94 10 15 0.00029 0.021 16.0 2.7 1 23 466 488 466 488 0.98 11 15 4e-06 0.00029 21.9 1.1 1 23 497 519 497 519 0.97 12 15 4.8e-05 0.0035 18.5 0.4 2 23 525 546 524 546 0.96 13 15 0.00021 0.016 16.4 4.1 1 23 552 574 552 574 0.97 14 15 0.00038 0.027 15.7 1.9 1 23 580 602 580 602 0.95 15 15 2.5e-06 0.00018 22.5 4.4 1 23 608 630 608 630 0.98
Sequence Information
- Coding Sequence
- ATGGAGCACGAGGTCAAGCAGGAGCCGCCGCAGCCGCCCGACGCCGCCGCGGCGCCGCCAGTTGACGGAGCAGAGCAGTGTCTGGTGAAGCAGGAGCGCAGCGACGACGCCAACGACGATGCCGCAGCGCTGCCAGTTGACGGAGCCGAGCCGAGCACGGTGAAGCAGGAGAGCAGTGCCGCGGCAACGGACGGCTTGGAGGACTCCTGCGCCAGTAGCGAGTGTTCGGGAGAGTACCTCAAGGAGGAGCCTGCAGCTGCTGCCGGCTGCAATGCAGAGCTTCTTATGTTTATGCTCAGGCCTTGCACTGTCCGCCTCGAGCGCGCCCGAGTGGATGAGTACTGCGCGCCACGCCCCAGACCACACAATGACGCCCACGAGCCTGACTGTACTGGTGCAGTGCGTCAAGTACCCGCGAGAACTCACGCGCAGGCGGAAACGTTGTCGTGTGACAGTTGCAGCGCACAGTTCACACTAAAAGATAAATTAGTTAGACATTTAAGAACATGCGCAAGTCAGATTTGGCCAGGATCTAAAAAGCCCCCACCCAGTAGGAGTATCACAAAAGAAAAACCATTCTCTTGCAATCACTGTCCGGAACAGTTTCTGTCCAAAGCCCGCTTGGCTGTACACAGACGGGCGTGCCCCCGAGAGGCGGGACAGCCGCCTAACAGGTGCGACGCCTGCACGGGACAATCACAACTATCACGACGCGAGCTCATCCACATTCCTTGCGCAGACGAAAAAACGCTCTCTTGCGACACTTGCGGGAAGAAATATGTGGAAAAATTTTATTTTGCTGCTGATATGCGGTTTATTGCAAAAGAGAAACTTTATAAATGCGATTTTTGTACGAAACAGTTCACGCGAAAATTTCATTTGTCTGGGCATATGAAGACACACACACCAGGGAGATCTTACTGCTGCGGCACTTGTGGCAAAACATTCAGACATAATTCTCGCTTAGTTGTCCATATGCGCAGTCACACGGGGGAACGACCTTACAGCTGCGACGTCTGTCAGAGCCGGTTCACACAACAAGTTCATTTGACTAGACATAAAAATACCCACTTGCTAATGCTAAAAAAACGAAGTATAGAGGGTGGCAAACAAACAAGCGCAATGAAACCAACTTTTGCGTGCGATATTTGTAACAAAAACTTTACACAAAAGAATAGCTTAGTTCCCCACATGCGTCGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCGGTTCACAGTTAAAATTAATTTAATTTTACATAATGAAACCCACCTGCCTGACGCAATGAAAACAACTTTTTCCTGCGATGTTTGTAACAGAAACTTTAAACGGAAGCATCAATTAGTTTGCCATATGCGCTGCCACACGGGGGAGAAGCCTTACAGCTGCGATGTCTGTCAGAAGCGATTCAAGTACAGTAATAGTTTTACTTTACATAAGGCCACCCACCTGCCCGACGCAATGAAACCAACTTTTGCTTGCGATATTTGTAACAAAAACTTTACACTAAAGTTTCTCTTAGTTCGCCACATGCGCAGTCACATTGGGGAGAAGTCTTATTGCGAAGTCTGTCAGAAGCGGTTTGCTGATAGTTCGTATTTAGTTATTCATAAAAGGCTCCACACGGGGGAGAAACCCTACTGCTGCGATGTCTGTCAGAAGCGGTTCGGGTATAAAACTAATTTAACTGTTCATAAAAGGCTCCACACGGGGGAGAAACCCTACTTCTGCGATGTCTGTCAGAAGCGGTTCGGGAATCAAACTAATTTTACTGCCCATAAAACGCTCCACACGGGGGAGAAACCCTACTTCTGCGATGTCTGTCAGAAGCGGTTCCGGAATAAAAATAATTTTACTTCACATATGAAGACGCACAATTCTAGCCTGACCTGA
- Protein Sequence
- MEHEVKQEPPQPPDAAAAPPVDGAEQCLVKQERSDDANDDAAALPVDGAEPSTVKQESSAAATDGLEDSCASSECSGEYLKEEPAAAAGCNAELLMFMLRPCTVRLERARVDEYCAPRPRPHNDAHEPDCTGAVRQVPARTHAQAETLSCDSCSAQFTLKDKLVRHLRTCASQIWPGSKKPPPSRSITKEKPFSCNHCPEQFLSKARLAVHRRACPREAGQPPNRCDACTGQSQLSRRELIHIPCADEKTLSCDTCGKKYVEKFYFAADMRFIAKEKLYKCDFCTKQFTRKFHLSGHMKTHTPGRSYCCGTCGKTFRHNSRLVVHMRSHTGERPYSCDVCQSRFTQQVHLTRHKNTHLLMLKKRSIEGGKQTSAMKPTFACDICNKNFTQKNSLVPHMRRHTGEKPYSCDVCQERFTVKINLILHNETHLPDAMKTTFSCDVCNRNFKRKHQLVCHMRCHTGEKPYSCDVCQKRFKYSNSFTLHKATHLPDAMKPTFACDICNKNFTLKFLLVRHMRSHIGEKSYCEVCQKRFADSSYLVIHKRLHTGEKPYCCDVCQKRFGYKTNLTVHKRLHTGEKPYFCDVCQKRFGNQTNFTAHKTLHTGEKPYFCDVCQKRFRNKNNFTSHMKTHNSSLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -