Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387373.1:1909150-1916225[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00047 0.034 15.4 0.7 1 23 99 121 99 121 0.98

2 12 4.7e-05 0.0034 18.5 4.3 3 23 129 149 127 149 0.98

3 12 3e-06 0.00022 22.3 0.9 1 23 155 177 155 177 0.99

4 12 0.0002 0.015 16.5 2.6 2 23 185 206 184 206 0.96

5 12 0.0026 0.19 13.0 2.7 1 23 211 233 211 233 0.94

6 12 4.7e-05 0.0034 18.5 2.0 1 23 239 261 239 261 0.97

7 12 9e-05 0.0065 17.6 0.4 2 23 268 289 267 289 0.93

8 12 4.2e-05 0.0031 18.7 2.2 1 23 297 319 297 319 0.97

9 12 8.9e-06 0.00065 20.8 1.3 1 23 325 347 325 347 0.97

10 12 3.2e-06 0.00023 22.2 2.8 1 23 353 375 353 375 0.99

11 12 9e-05 0.0065 17.6 7.8 1 23 381 403 381 403 0.98

12 12 1.5e-05 0.0011 20.0 0.4 1 23 409 431 409 431 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00047	0.034	15.4	0.7	1	23	99	121	99	121	0.98
2	12	4.7e-05	0.0034	18.5	4.3	3	23	129	149	127	149	0.98
3	12	3e-06	0.00022	22.3	0.9	1	23	155	177	155	177	0.99
4	12	0.0002	0.015	16.5	2.6	2	23	185	206	184	206	0.96
5	12	0.0026	0.19	13.0	2.7	1	23	211	233	211	233	0.94
6	12	4.7e-05	0.0034	18.5	2.0	1	23	239	261	239	261	0.97
7	12	9e-05	0.0065	17.6	0.4	2	23	268	289	267	289	0.93
8	12	4.2e-05	0.0031	18.7	2.2	1	23	297	319	297	319	0.97
9	12	8.9e-06	0.00065	20.8	1.3	1	23	325	347	325	347	0.97
10	12	3.2e-06	0.00023	22.2	2.8	1	23	353	375	353	375	0.99
11	12	9e-05	0.0065	17.6	7.8	1	23	381	403	381	403	0.98
12	12	1.5e-05	0.0011	20.0	0.4	1	23	409	431	409	431	0.97

Sequence Information

Coding Sequence: ATGTCTTTTGACACCGTATTGATTAAGCAAGAACCTTTCGAATACGAGGATGATGCGGGAACAGCGGAAGCGTCAGAACCTTACAAAAAAGTTTCGGTTAAACAGGAATTTCATGTCGAAGTTGAAGTTTCACTGGAGCCCTGCGTGAAGCTCGAGACGCCGGTGAGCTACCCGGAGACGTCAGGGGATGCTAAAGATGTAGCAGCAAAATGGGAGTGCGAGCCTTCACTCAAATGGGACCAGGACCCGGTGGCTCCGGACCCTCAACCCTGGCCCAACCAGCCTCAAGACACATTCATCTGCAACGTTTGTCGACTACCATTCCGCCAAGTCAACGACCTCCGCGAACATAAGAAAACACATATGATTGGTACAGAATATTGGTGCAATATATGTAACAAAAAGTTCAAGAAGAAAGCCAGCTTGTGTATACATTACCGGAAACACACAGGCTATAAACCTTACACATGTGTTGTGTGTAAGAAGGGATTCACACAGAAAATATATTTAAACAAGCATATAATAACACATGAAGATATAACAAAAACTGTGCAGTGCGAAGTGTGCAACAAAATATTTACGGATAAATTCTCTTTAAAAGTCCACTGTCGAAGTCACACAGAGAAAACTTACGCTTGTGACTTGTGTGACAAGCGTTACGCTTTCAAATCCCATCTAGACACACACAAGTTCCTTCACACAGGTCAGAAACCGTTCGCCTGCAGTGTGTGCGGTAAAGATTTTGCAAGGAAATGCTACATGCGGGTGCATATGCAGCAACATGCTAATGACAAGTCCCTATCCTGCGACGTGTGTGAGAAACGATTCACACGGGTCTCATCTCTGCGTGCACACAGTCTCTTACACACAAGCCCGATAGGCAAACCGTTCAACTGCCAGTTCTGTGACAAATTATTCACACTCAAATCGTCACTGCGTGTCCACATGAAGTTGCACAACAGCGAGAAACCTTTCATATGCGATTTGTGCGATAGAAGATTCATCCAGAAAGTCCATTTAATAACTCATATGTTGCAGCACTCGCAACAGAAACCGTACCAGTGTGACATCTGTCAGAAACAGTTTATACAGAAACATAATTTGAGTGTGCATAAGCGGATTCACTCAGATGAGAAACCGTTTGAATGCGACATATGTCACAAACATTTCAAACATAAATCACATTTGGTTGGCCATCAGCTCGTCCATACCGGTGCTAAGCAATTCCCCTGTGAACTCTGCGGTAAATATTTTGCTTTAAAATCCAACATGAAGTCTCATATGCTCTTACACATGGACAGGACGTCGGAAAGATACTATTTAGGTGACAAAATTGCAAAGAGTTTGGAAGAGAAACTTGAAAGGATGAAACGAGGTATTGGCAAGCTGAGTGATAGTCAAACAGCTACTGTTACTACGGCTACTGTTTCTTCCTTACTTTCCACGCCTGACCCTTTAGAATAA
Protein Sequence: MSFDTVLIKQEPFEYEDDAGTAEASEPYKKVSVKQEFHVEVEVSLEPCVKLETPVSYPETSGDAKDVAAKWECEPSLKWDQDPVAPDPQPWPNQPQDTFICNVCRLPFRQVNDLREHKKTHMIGTEYWCNICNKKFKKKASLCIHYRKHTGYKPYTCVVCKKGFTQKIYLNKHIITHEDITKTVQCEVCNKIFTDKFSLKVHCRSHTEKTYACDLCDKRYAFKSHLDTHKFLHTGQKPFACSVCGKDFARKCYMRVHMQQHANDKSLSCDVCEKRFTRVSSLRAHSLLHTSPIGKPFNCQFCDKLFTLKSSLRVHMKLHNSEKPFICDLCDRRFIQKVHLITHMLQHSQQKPYQCDICQKQFIQKHNLSVHKRIHSDEKPFECDICHKHFKHKSHLVGHQLVHTGAKQFPCELCGKYFALKSNMKSHMLLHMDRTSERYYLGDKIAKSLEEKLERMKRGIGKLSDSQTATVTTATVSSLLSTPDPLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00155520;
90% Identity: iTF_00155520;
80% Identity: -