Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387371.1:5213689-5223068[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.0029 0.21 12.9 0.4 2 22 237 257 236 257 0.95

2 22 0.82 60 5.2 0.1 1 20 281 300 281 302 0.83

3 22 0.84 61 5.1 0.1 2 15 337 350 336 353 0.81

4 22 0.00044 0.032 15.4 3.7 1 23 364 386 364 386 0.99

5 22 4.5e-05 0.0033 18.6 4.8 1 23 388 410 388 410 0.98

6 22 0.0019 0.14 13.5 5.0 1 23 416 438 416 438 0.98

7 22 0.0097 0.71 11.2 7.5 1 23 444 466 444 466 0.96

8 22 2e-05 0.0014 19.7 3.9 1 23 472 494 472 494 0.98

9 22 0.00049 0.036 15.3 4.6 1 23 510 532 510 532 0.96

10 22 0.00015 0.011 16.9 5.0 1 23 538 560 538 560 0.98

11 22 5.4e-05 0.004 18.3 3.9 1 23 569 591 569 591 0.98

12 22 0.025 1.8 9.9 1.1 1 23 597 619 597 619 0.96

13 22 0.15 11 7.5 5.2 1 23 627 649 627 649 0.97

14 22 0.00018 0.013 16.7 4.9 1 23 655 677 655 677 0.98

15 22 6.9e-05 0.0051 18.0 0.9 1 23 682 704 682 704 0.98

16 22 0.019 1.4 10.3 0.6 1 21 710 730 710 731 0.94

17 22 6.1e-05 0.0044 18.2 4.0 1 23 741 763 741 763 0.98

18 22 0.0084 0.61 11.4 1.3 1 23 769 791 769 791 0.98

19 22 0.00024 0.017 16.3 2.6 1 23 797 819 797 819 0.98

20 22 0.0051 0.37 12.1 5.2 1 21 825 845 825 846 0.94

21 22 0.0035 0.26 12.6 2.4 1 21 853 873 853 874 0.93

22 22 0.016 1.2 10.5 0.1 1 23 903 925 903 925 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.0029	0.21	12.9	0.4	2	22	237	257	236	257	0.95
2	22	0.82	60	5.2	0.1	1	20	281	300	281	302	0.83
3	22	0.84	61	5.1	0.1	2	15	337	350	336	353	0.81
4	22	0.00044	0.032	15.4	3.7	1	23	364	386	364	386	0.99
5	22	4.5e-05	0.0033	18.6	4.8	1	23	388	410	388	410	0.98
6	22	0.0019	0.14	13.5	5.0	1	23	416	438	416	438	0.98
7	22	0.0097	0.71	11.2	7.5	1	23	444	466	444	466	0.96
8	22	2e-05	0.0014	19.7	3.9	1	23	472	494	472	494	0.98
9	22	0.00049	0.036	15.3	4.6	1	23	510	532	510	532	0.96
10	22	0.00015	0.011	16.9	5.0	1	23	538	560	538	560	0.98
11	22	5.4e-05	0.004	18.3	3.9	1	23	569	591	569	591	0.98
12	22	0.025	1.8	9.9	1.1	1	23	597	619	597	619	0.96
13	22	0.15	11	7.5	5.2	1	23	627	649	627	649	0.97
14	22	0.00018	0.013	16.7	4.9	1	23	655	677	655	677	0.98
15	22	6.9e-05	0.0051	18.0	0.9	1	23	682	704	682	704	0.98
16	22	0.019	1.4	10.3	0.6	1	21	710	730	710	731	0.94
17	22	6.1e-05	0.0044	18.2	4.0	1	23	741	763	741	763	0.98
18	22	0.0084	0.61	11.4	1.3	1	23	769	791	769	791	0.98
19	22	0.00024	0.017	16.3	2.6	1	23	797	819	797	819	0.98
20	22	0.0051	0.37	12.1	5.2	1	21	825	845	825	846	0.94
21	22	0.0035	0.26	12.6	2.4	1	21	853	873	853	874	0.93
22	22	0.016	1.2	10.5	0.1	1	23	903	925	903	925	0.92

Sequence Information

Coding Sequence: ATGGAAGGGAACGAACCCCCTGACGGGGGCAAAAGCGAAGGCAACCGGGTCTTATTGGCAACGCGTAAGCGTGTTGTGGAAACCCAAAGTGTTATCAAAGACATTATCGATAAACGAAACACGGATATACCAGCCGCGGCTTCTATACAGCACGCTTACACGGTCCCTGAATACGCCCCGGGTACCAAATTATTGTACGGCCCTAATGATAAAGCTCCGTTTATCGTACAGCCGTCGCGGTGGGGGCCTGGAGCGCTCAGAGCACGAGTCAAGCAGGAGCCGCCTCAGCCGCCCGACGACGCCGCGGTGCCGCCAGGTCAGCTCTCCCTGCTCTGCTTGTCCGTGCGGCCCGGTGCGGCTAGGGCTGCCATGCTGTCCCCAGTTGACCGAGCAGAGTCGACCACGGTGAAGCAGGAGTGCAGTGCCGCGGCAACTGACGCCTTGGAAGACTCTTGCGCCAGTAGCGACTGTTCGGGAGAGTACCTGCTTGGGGAGCCAGCAGCTCCTGCCCGGTGCAATGTAGAGCTCTCTATGTTCAAAGTTAGGCCTTGTGCTGTCCGCCTCGAGCGCACCCAAGTGGACAAGTACTCCACCAGCACGCCACGCGCTCTGCCACGCCCCAGGTTACATAATAACACCCATGCACCTAACTTTACTACTGAAGCGAGTCAAACACCCATGAAAACTCATTTGCAAAGGAAAATATTGTCATGTGACAGTTGCAGCGCACAGTTCACACAAAAAGATAAATTAATTAAACATTTAAGAACATGCTCAAGTCAGATTTGGCAAGGATCTAAAAAGCCCTCATCCAGTAGAAGTATCAGAAAAGAAAAACCATTCTCTTGCAATCTCTGTCCAAAACAGTTTCTGTCAGAAGCCCGCTTGGCTGTGCACAGACAGGCCTGCCGCCAAGAGACGGGACAGCCACTCAACAGGTGTGACGCTTGTATCGGACCATCACAACGCCAGCTCATCCACATTCCTTGCACACAGGAGAAATCTCTCTCTTGTGACATTTGTGGGAAAAAATATATGGAAAAATATTACTTTGCTGCTGACATGCAGTTTCTTGTGGAGGAGAAACTTTATAAATGTGATGTGTGTACAGAACAGTTCTCACTAAAACATTCCTTGGCTAAGCACAAGAAGACACACACTTACTGCTGTGATACTTGCAGCAAAATATTCAGCCACAGTGGTTTGTTAAAAAACCATATACGCAGTCACTTGGAGAAGAAGTCTTACCATTGTGATGTCTGTCAAAAGCAGTTTTCGAAATTATCTTATCTTTCTTATCACAAAAGGAGTCATACAAAGGATAAACCCTACTGCTGCAATATCTGCAAAAAACAGTTTTCATTCTCTTCAAGCCTCAGTCAACATAAACATTTGCATACAGGAGAAAAGCGATACAGCTGTGATATCTGTCAGAAAAAGTTTAATCAATCTGGCCACCTTAGCCGTCATAAACAAAGCCATGGAGGTGAAAAGCGTGCAAAACAGACACGCAATGGAATGTCACCCCACTGCTGTGATGTCTGTCAGAAGCAATTCGAAAGTTTGTGGAACTTAACTCGACATAAACGCATACATACAGGAGAGCGACCTTACCACTGCGATGTTTGCCAGAAGCGGTTCACGGATAAATATACTCGGAATAAGCATATGGAAACTCACAAGTCTGCCATGATGAAAAAAGGTTACTGCTGCGATATTTGTAACAAAATATGCAGAGACAAGTCTAAGTTAGTTGTCCATATCCGTAGTCACACGGGGGAGAAGCCTTACAGCTGCAATCTCTGTCATAAGCGGTTTGCTGCTACAGGTGTACTTAAACTCCACAAACTGATCCACGCAGGGCCAGGGGAGAAACCTTACAGCTGCGATGTCTGTCATAAGCGGTTTGCTGCTACACATCAACTTAAATTCCACAAACGGATCCACACAGGGGAGACACCTTACAGCTGCAATGTCTGTCAGAAGCAGTTTAAATACAGTTCGTCCTATAATTATCATAGACGCAAGCATACAGGAGAACAGTACAGCTGTGATATCTGTCAGAAACAATTCATGTCTTTGTGGCTCTTAACTCGTCATAAACGCATCCACACGGTAGAGCTACCTCACTACTGCAATGTCTGTCAGAGCCGGTTCATGGATACAACTGCTCTGAATAGGCATATGGAATCCCAGAAGTGTGCTATGATGAAAAACCGTTACTGCTGCGATATTTGTAACCAAACATGCAGAGATAAGTCTACATTAGTTGTCCATATCCGTAGTCACATGGGGGAGAAGCCTTACAGCTGCGATCTCTGTCATAAGCGGTTTGCTGCTACAGGTGTACTTAAACTCCACAAACGGATCCACACAGGGCAAAAACCTTACAGCTGCGATGTCTGTCATAAGCGGTTTGCTGCTAAACAATCACTTAAACTCCACAAACGGATCCACACAGGGGAGAAGCCTTACAGCTGCAATGTCTGTCACAAGCAGTTTACGAACAGTTCAAGCAATAGTCGTCATAGATGCAACAATACGAGGGAACAGCGATATTGCTGCGATGTCTGTCAGAAGCAGTTCACGTCTAGAAATGCACTTGAGAATCATTTTAAGCAGACATTTTGCAGAATCTGTCAACAACAGTTTGCTTGCCGCGGGTCTGTGAAAGCGCACAAACAAAACCAGCACAAAATGGCACTCTTTCTTTGTGCTGTTTGCAAAATACAGTTTCCGAATAAGAAGATGCTGGTGCGGCACGTGGGGATTCACCTGTGGGCGCCGCAGGACGCGCTGGGCGCCGGTGGGAGCCAAGACCGATAA
Protein Sequence: MEGNEPPDGGKSEGNRVLLATRKRVVETQSVIKDIIDKRNTDIPAAASIQHAYTVPEYAPGTKLLYGPNDKAPFIVQPSRWGPGALRARVKQEPPQPPDDAAVPPGQLSLLCLSVRPGAARAAMLSPVDRAESTTVKQECSAAATDALEDSCASSDCSGEYLLGEPAAPARCNVELSMFKVRPCAVRLERTQVDKYSTSTPRALPRPRLHNNTHAPNFTTEASQTPMKTHLQRKILSCDSCSAQFTQKDKLIKHLRTCSSQIWQGSKKPSSSRSIRKEKPFSCNLCPKQFLSEARLAVHRQACRQETGQPLNRCDACIGPSQRQLIHIPCTQEKSLSCDICGKKYMEKYYFAADMQFLVEEKLYKCDVCTEQFSLKHSLAKHKKTHTYCCDTCSKIFSHSGLLKNHIRSHLEKKSYHCDVCQKQFSKLSYLSYHKRSHTKDKPYCCNICKKQFSFSSSLSQHKHLHTGEKRYSCDICQKKFNQSGHLSRHKQSHGGEKRAKQTRNGMSPHCCDVCQKQFESLWNLTRHKRIHTGERPYHCDVCQKRFTDKYTRNKHMETHKSAMMKKGYCCDICNKICRDKSKLVVHIRSHTGEKPYSCNLCHKRFAATGVLKLHKLIHAGPGEKPYSCDVCHKRFAATHQLKFHKRIHTGETPYSCNVCQKQFKYSSSYNYHRRKHTGEQYSCDICQKQFMSLWLLTRHKRIHTVELPHYCNVCQSRFMDTTALNRHMESQKCAMMKNRYCCDICNQTCRDKSTLVVHIRSHMGEKPYSCDLCHKRFAATGVLKLHKRIHTGQKPYSCDVCHKRFAAKQSLKLHKRIHTGEKPYSCNVCHKQFTNSSSNSRHRCNNTREQRYCCDVCQKQFTSRNALENHFKQTFCRICQQQFACRGSVKAHKQNQHKMALFLCAVCKIQFPNKKMLVRHVGIHLWAPQDALGAGGSQDR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00155514;
90% Identity: iTF_00155514;
80% Identity: -