Axyl001039.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387370.1:4487665-4495775[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.12 9 7.7 1.8 1 23 56 78 56 78 0.94 2 34 2.6 1.9e+02 3.6 0.1 2 23 109 131 108 131 0.92 3 34 0.55 40 5.7 0.4 2 23 153 175 153 175 0.95 4 34 1.9 1.4e+02 4.0 1.1 1 21 180 200 180 203 0.72 5 34 0.24 17 6.9 0.9 1 23 208 231 208 231 0.94 6 34 0.51 37 5.8 0.4 1 23 236 259 236 259 0.88 7 34 0.0068 0.5 11.7 0.4 2 23 267 289 266 289 0.96 8 34 0.0009 0.066 14.5 2.0 1 23 295 317 295 317 0.97 9 34 0.37 27 6.3 0.0 1 23 372 395 372 395 0.90 10 34 0.17 12 7.3 1.6 2 23 471 493 470 493 0.95 11 34 0.042 3 9.2 2.4 1 23 498 521 498 521 0.91 12 34 0.23 17 6.9 0.0 2 23 626 648 625 648 0.93 13 34 0.0082 0.6 11.5 2.2 1 23 670 693 670 693 0.95 14 34 0.0041 0.3 12.4 1.7 1 23 698 721 698 721 0.92 15 34 0.074 5.4 8.5 1.2 1 23 726 749 726 749 0.97 16 34 0.084 6.1 8.3 0.3 1 23 805 828 805 828 0.96 17 34 0.022 1.6 10.1 0.0 2 23 859 881 858 881 0.94 18 34 0.034 2.5 9.5 1.0 2 23 904 926 904 926 0.96 19 34 0.0051 0.37 12.1 3.3 1 23 931 954 931 954 0.96 20 34 0.12 9 7.7 0.6 1 23 957 980 957 980 0.94 21 34 0.042 3 9.2 1.1 2 23 986 1008 985 1008 0.91 22 34 0.0008 0.058 14.6 0.6 2 23 1016 1038 1015 1038 0.97 23 34 0.003 0.22 12.8 0.1 2 23 1045 1066 1044 1066 0.97 24 34 1.4e-05 0.0011 20.1 1.1 1 23 1072 1094 1072 1094 0.90 25 34 0.0003 0.022 16.0 4.6 1 23 1100 1123 1100 1124 0.96 26 34 0.73 53 5.3 5.2 1 23 1192 1215 1192 1215 0.95 27 34 0.18 13 7.2 0.0 3 23 1243 1264 1241 1264 0.95 28 34 0.00055 0.04 15.2 0.3 3 23 1316 1337 1314 1337 0.96 29 34 0.051 3.7 9.0 3.2 1 23 1340 1363 1340 1363 0.95 30 34 0.16 11 7.4 0.3 1 23 1369 1392 1369 1392 0.93 31 34 0.019 1.4 10.3 0.5 2 23 1400 1422 1399 1422 0.95 32 34 0.54 39 5.7 0.5 1 23 1427 1449 1427 1449 0.98 33 34 1.8e-06 0.00013 23.0 0.2 1 23 1455 1477 1455 1477 0.98 34 34 0.043 3.1 9.2 0.5 2 23 1484 1506 1484 1506 0.93
Sequence Information
- Coding Sequence
- ATGCCTAGTAAAAGATCCTCTCCTTTCATTGCAGGTCCGGAAAACGAATCAGAACCGGACGGTAGCAAACAGAAAATGAGATTGCAAATCGAGATGAAACGAAGAAACATAGAGTCCGTATTACTATACAGTAACGTTATTCCCTTTATTTGGCACCGCGGGAAGCATATGTGCTTCTTCTGCCAGGTCGCCTATAAACAACCCAGTAAGCTGCTAACCCACTACGACGAACACGACTGCGTTGACTTACCAACGGCCGTTAAGCGTTACACTCAAAAACGAGGCAATAGAGAAGCAGCCATCAAAGTAGAAATCACTGATATATACTGTAAGCTTTGCTCAGAAAACATGGCCAACTTAGACGAGCTCATCCAACATTTGATTGAGAATCATAACGTGGATTATGATCTTACTATTCCAAACTGCTTCCTCCCTTTTCGATTGAAAGGCCCTCCTACCTGCGGCACTTGCAACATGGAATTCGATCTGTTCGAATATCTACTCCGTCATGCGAACAAACAGCACCTTAAACACAGTTTCATTTGCGAAATATGCGGCAAAAGTTCCTTCTCTGAACGCTATCACGTCTTACACGTACGCAATTTCCACAAGAAAGGAGGCTACCGATGCGAATATTGCGGTCTGAAATTGTCGTCTTTGCGTAAAAAATCGCTTCACATACAAAACTTGCATAAGGCGAATCAATTCAAATGCACTATCTGCGATGCGATGTTGAAGAGCTCGTATTTCAAAAACTTACATCTAGCAGAAGTGCACGGGGTCGAAGAGAAAAGGATAAAGTGTCCACACTGTCCCAGAGTTTTCCCTCAGGACAATATAATGATACGTCATATGAAGCGTGTGCATTTGAAACTTAAGGAACACAAGTGCCCTGTGTGTGGGATAAGATTCTTCGAGAGCTACCAGATGAAGAATCATCTGATGTATCACTTTGGAGAAAATAATTTCAGCTGTGAAATATATTACGCTTCTAAGGATAGGGGGCACAAGAAAACCGCGCTCCATCGCCACAAGCTGCGCTTGATTCGGCGGAACGTCGGTATCATTCTAGAATACGGAAACGTCACGCCTTTCTTGTGGGCGCGCTCTACGTACTTGTGCTTCTATTGCAAAGTACCAGTCGTGGACCCAGACGACTTGCGCGACCATGTCGCCGAAATGCACCAGTTCGTAGATCTCGATAGCATCCTCTGTGAACGCATCTTAAACACCTGGGACAGCGAAGTACCTGTGAAACTAGACGTCAAAGATATCTCCTGTAAGCTCTGCATTACACCCATCGCTAACCTAGCTGATCTCATCACCCACCTCAATGAAGAACACGTAGTGGCTTACGATACCACTATACAAGACTGTCTGTTCGCTTTCGAGCTGGGAAAAGAGAAACTCAAATGCTCGTTCTGCGACTCACAGTTCAACTATTTCGAATACCTTCTCCGCCACGCGAACAAGTATCACATGAACCACGACTTCATTTGCATGGTGTGCTACAAATCTTTCCACCGTAAAGTGGCATTGATGACCCATTTCAACGACTACCATAAAGAAGGAGGCTATCCTTATAAACCTAAGGATAGGGGACACAAGAGAACTGCTCACGACCGACGCAAGCTGAGCTTGATACGAAGGAATATCCACATCATACTACAATACGGCAACGTAATGCCTTTCATGTGGTCACGCTTTCACACATACCTCTGTTTCTATTGCAAAGCACTGGCCATGGATACAGAAGCTTTACGCGAACATGTTGCTGAAATGCACCAGTTCATAGACCTCGATGCTATACTCGGTGAGCGCATCGCGCAACCCTACGATTGCGAAGTACCCGTCAAATTAGACGTCACAGACATATCATGCAGACTTTGCGATACAACCGTCACTGATGTACCTGACCTGATTGCCCACCTTAATGGCGTCCACCAAGCGGGCTACAATACCTCTATAAAAGACTGCCTATTCGCATTTGAGCTCGGCAAAGAAAAACACAAATGTTCAACCTGTGGCTTGGAGTTCAACTATTTCGAGTACCTAATCCGTCACGCACTAAAATACCACGTCGAACAAAATTACAACTGCACGGTTTGCGAGAAATCCTTTCATAGAAAGATGGCTTTAGTGGCTCATTTTAACGACTACCACAAGGAGGGAGGGTATCCTTGTGACGTATGCGGTTCTATGTTCGTATCGGCATCGAGACGGTACCATCACAAGAAAACTGTCCACTTAACTGATCAGCGGGCTTGTCCGGAATGCGGTGCAAAAATCAGTACATTGGAGGATAAAAATAAGAAACTGGAAATCAAACGTAAGCAATTGATAAAACGGCGCAATGTCGAATACGTGCTTCAGTACGGCAACGTGACCCCCTTCCTGTGGTTCAAGGGGAAATACAGGTGCTTCTACTGCACCGAACCAATGAAAAACCCTGAAATGTTACGCGAACACACCGCCAAAGTTCATCAGTTTGCGAATCTAGAGCTTGCTGTGTTCGACAGAACAAAAGACAACCGGAACAAAGACGCTGCCATCAAAATCGACGTCACCGGCATCTCTTGTAAACTGTGCCCTAAACCTGTTCCTGACTTAGAACAGCTGATAACACACCTCATCATAGCACACGACGCAGAATACGACGTCAACGTCTCTAACTGCCTCTTACCTTTCCAGTTAGACAAGGACAACCCGACCTGCCCCACCTGCAAAATGAAGTTTGTCTTCTTTGAATACCTCCTACGCCATGCCAATAAGTACCACTTGGCTCACGAGTATATATGTGACGTGTGTGGCACTAGCTTCCAAGGGGAGAACCACTTGAAGATGCACCACAGGTACTACCACAGGGAGTACAAGTGCGACTATTGCGATGTCAGGTTGACGACGCTCTCCAAAAAGATAATTCACGAGAAAAACGTCCACATGGCCAACTTGCTCAAGTGCGCTCACTGTCCGGAAACTTTCAAAAGTCCTTACTTCAAAAAACTCCATCTAGCCAACGTGCATGGGGTCGAAGAATTAAAAATCAAGTGCCAGTACTGCACTAAAGTGTTCCCCCAAGAGAGCATCATGTCACGCCACATGCGGAGGGTCCATTTGAGAGAGAGAAACGTAGAATGCGAAGTATGCGGAGAGAAGTTCTTCGGGCCTTACGACGTGAAGCTACACATGCTGAAGCATAGCGGCGAGAAGTCCTTCATATGCTCCGTCTGCGGAAAAAAGTTTTCTAAAAAGAGCAACCTGAATTCCCACTCTGTGTTACACACCGGCAAAAAAGCTTACAATTGCACGATATGCAAAAAGGCTTTCGCGTACCACACCAACTTGTCTATGCATATGAAGAGTATGCACCACGGTTACGTCACTCTAGAAAAATCACAAGACGTGGGTGAAATAGAAGTCGTCCAGATGGAGTTCATAAACGACGAATTGGAAGGAACCAAGAGAAAGAAGGAAGAAGAGACATACTTGGAACGACTGGGTACGGTCCGGAAGAACATACTGTACCTGCTTCGCTACGGAAACGTCATGCCCTTCCAATGGAATACTAAAGGCTTCAGTTGCTTCTATTGCTCCAAAACTATGAGGGACTGTGACACTCTCAAGGAGCACACGACATCTAAACACGATTCCGTCGACCTAGAGGCGTTTGTTACAAAAATTGTGTCTAAAAACGTACCGGTTAAAATAGATGTCACGGGGCTCGCTTGCAAACAATGCTCTGAGCCTCTAACCAGTATCGAAGAACTAATAGCTCATATAATCTCTCTACATGGAGAACTATACGACAACTCCGCTGGAGTCTGCGTATTCCCCTTCGTTTTGAACAAGGACATGATGCAGTGCGTCCTCTGCGTGAGCAGATACGATAACTTCCCGTCCATGGTCGTCCACATGTACAAAGAGCATATGGCGCACTCTTCCATATGCCAAATATGCGGTCTAAGCTTTATAGACAAAATCCGCTTGTCCAGACATATTAACAAAAGTCACGTCGGGCATAAATGCAAGAGTTGCGGGAAAATATTCGACGCGATCCACAAATTGGAAAGACACAAGGAACGCATTCACGGGTATGTGAAAACCCACGAGTGTAACCTTTGCAGTGCCGTGTTCGAAAACGATTATCAAGTCAAAGTGCATTTAGGAAAAGTGCATAACGTTGAGAAATATCGCATTAAGTGCGAGTTATGCCCCAAGATATGCACTACTAAAGGCGCGATGCTGATGCACGTTCAGTCCTTGCACTCTGACGTGCGCTACGAATGTGATCTATGCGATTACAAGACACCGATAAAATGGATGATAAAGTTGCATAAACGCAAGCATTTTGGTGAGAGGGATTACGCGTGTAGTATTTGTGACCGCTTATTCGGGAGATCTAGTAATCTGAGGGCCCATATGAAGGTGCATACGGGAAGTTTCGGCCGCGTTTGCCGCTGGTGCCGCAAAGGATTCACGGATCTAGAAACACTGGACAAGCATGAGAAGGAGTCCCATTATTACACGAATTACGTTTAA
- Protein Sequence
- MPSKRSSPFIAGPENESEPDGSKQKMRLQIEMKRRNIESVLLYSNVIPFIWHRGKHMCFFCQVAYKQPSKLLTHYDEHDCVDLPTAVKRYTQKRGNREAAIKVEITDIYCKLCSENMANLDELIQHLIENHNVDYDLTIPNCFLPFRLKGPPTCGTCNMEFDLFEYLLRHANKQHLKHSFICEICGKSSFSERYHVLHVRNFHKKGGYRCEYCGLKLSSLRKKSLHIQNLHKANQFKCTICDAMLKSSYFKNLHLAEVHGVEEKRIKCPHCPRVFPQDNIMIRHMKRVHLKLKEHKCPVCGIRFFESYQMKNHLMYHFGENNFSCEIYYASKDRGHKKTALHRHKLRLIRRNVGIILEYGNVTPFLWARSTYLCFYCKVPVVDPDDLRDHVAEMHQFVDLDSILCERILNTWDSEVPVKLDVKDISCKLCITPIANLADLITHLNEEHVVAYDTTIQDCLFAFELGKEKLKCSFCDSQFNYFEYLLRHANKYHMNHDFICMVCYKSFHRKVALMTHFNDYHKEGGYPYKPKDRGHKRTAHDRRKLSLIRRNIHIILQYGNVMPFMWSRFHTYLCFYCKALAMDTEALREHVAEMHQFIDLDAILGERIAQPYDCEVPVKLDVTDISCRLCDTTVTDVPDLIAHLNGVHQAGYNTSIKDCLFAFELGKEKHKCSTCGLEFNYFEYLIRHALKYHVEQNYNCTVCEKSFHRKMALVAHFNDYHKEGGYPCDVCGSMFVSASRRYHHKKTVHLTDQRACPECGAKISTLEDKNKKLEIKRKQLIKRRNVEYVLQYGNVTPFLWFKGKYRCFYCTEPMKNPEMLREHTAKVHQFANLELAVFDRTKDNRNKDAAIKIDVTGISCKLCPKPVPDLEQLITHLIIAHDAEYDVNVSNCLLPFQLDKDNPTCPTCKMKFVFFEYLLRHANKYHLAHEYICDVCGTSFQGENHLKMHHRYYHREYKCDYCDVRLTTLSKKIIHEKNVHMANLLKCAHCPETFKSPYFKKLHLANVHGVEELKIKCQYCTKVFPQESIMSRHMRRVHLRERNVECEVCGEKFFGPYDVKLHMLKHSGEKSFICSVCGKKFSKKSNLNSHSVLHTGKKAYNCTICKKAFAYHTNLSMHMKSMHHGYVTLEKSQDVGEIEVVQMEFINDELEGTKRKKEEETYLERLGTVRKNILYLLRYGNVMPFQWNTKGFSCFYCSKTMRDCDTLKEHTTSKHDSVDLEAFVTKIVSKNVPVKIDVTGLACKQCSEPLTSIEELIAHIISLHGELYDNSAGVCVFPFVLNKDMMQCVLCVSRYDNFPSMVVHMYKEHMAHSSICQICGLSFIDKIRLSRHINKSHVGHKCKSCGKIFDAIHKLERHKERIHGYVKTHECNLCSAVFENDYQVKVHLGKVHNVEKYRIKCELCPKICTTKGAMLMHVQSLHSDVRYECDLCDYKTPIKWMIKLHKRKHFGERDYACSICDRLFGRSSNLRAHMKVHTGSFGRVCRWCRKGFTDLETLDKHEKESHYYTNYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -