Axyl001381.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387370.1:8681583-8688363[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 38 0.033 2.4 9.6 0.5 1 21 68 88 68 89 0.93 2 38 0.02 1.5 10.2 0.5 2 23 161 182 160 182 0.97 3 38 0.036 2.6 9.4 0.1 1 23 186 208 186 208 0.95 4 38 1.7 1.2e+02 4.2 1.7 1 21 213 233 213 236 0.78 5 38 0.045 3.3 9.1 0.3 1 23 242 265 242 265 0.95 6 38 0.00054 0.039 15.2 1.0 1 23 272 295 272 295 0.98 7 38 0.00049 0.036 15.3 0.9 3 23 304 324 302 324 0.96 8 38 1.4e-05 0.001 20.1 2.9 1 23 330 352 330 352 0.98 9 38 0.0074 0.54 11.6 0.2 1 23 430 453 430 453 0.96 10 38 0.72 52 5.3 0.3 2 23 480 502 479 502 0.92 11 38 1.7 1.2e+02 4.2 3.5 1 23 524 546 524 546 0.96 12 38 0.0011 0.08 14.2 1.3 1 23 550 572 550 572 0.96 13 38 0.0076 0.55 11.6 0.2 1 21 606 626 606 629 0.90 14 38 0.0011 0.077 14.3 2.0 1 23 636 659 636 659 0.97 15 38 1.2e-05 0.00091 20.3 5.2 1 23 666 688 666 688 0.99 16 38 0.48 35 5.9 0.1 1 23 742 764 742 764 0.97 17 38 1.7 1.2e+02 4.2 0.3 2 23 790 812 789 812 0.92 18 38 0.045 3.3 9.1 1.8 1 23 834 856 834 856 0.99 19 38 0.0092 0.67 11.3 5.2 1 21 860 880 860 882 0.95 20 38 0.0046 0.34 12.2 0.0 1 23 887 910 887 910 0.96 21 38 0.018 1.3 10.4 3.8 1 23 916 939 916 939 0.96 22 38 0.15 11 7.5 0.1 1 23 995 1017 995 1017 0.95 23 38 0.33 24 6.4 7.8 1 23 1085 1107 1085 1107 0.95 24 38 0.019 1.4 10.3 0.2 3 23 1113 1133 1112 1133 0.95 25 38 0.013 0.94 10.8 0.7 1 23 1141 1164 1141 1164 0.95 26 38 0.25 18 6.8 0.4 1 23 1170 1193 1170 1193 0.95 27 38 0.18 13 7.2 3.3 1 23 1199 1222 1199 1222 0.96 28 38 0.00059 0.043 15.0 0.2 1 23 1228 1250 1228 1250 0.96 29 38 7.7e-06 0.00056 21.0 1.8 1 23 1256 1278 1256 1278 0.99 30 38 0.1 7.4 8.0 4.4 1 23 1351 1374 1351 1374 0.94 31 38 0.02 1.4 10.2 0.9 3 23 1442 1462 1440 1462 0.96 32 38 6e-05 0.0044 18.2 1.0 1 23 1466 1488 1466 1488 0.98 33 38 0.00016 0.011 16.9 0.5 1 23 1493 1516 1493 1516 0.96 34 38 0.0012 0.086 14.1 2.4 1 23 1522 1545 1522 1545 0.98 35 38 0.081 5.9 8.3 1.5 1 23 1552 1575 1552 1575 0.95 36 38 0.00057 0.041 15.1 1.5 1 23 1581 1603 1581 1603 0.97 37 38 1.5e-06 0.00011 23.2 1.1 1 23 1609 1631 1609 1631 0.99 38 38 3.8e-05 0.0028 18.8 5.1 1 23 1637 1659 1637 1660 0.96
Sequence Information
- Coding Sequence
- ATGTACGCAGGACGCAGCCAAACCGAACACGAAACTGTGATAAAAGTAGAGGCAACAGATGTACCCATAGAGCATTTGCTCAAGGAAAAGCCGCGGTACCAGAGAAGCGCCCGAGCGGAAGCTAGGCTCGCGACAAAGAAAAACGCGACCGCCATTCTAGAATGCTGGTCCGTCGTTCCCTTCAGATGGAAGAGAAACCAGTTCAAATGCGCCTACTGCGAAGCCAACTTCACAGACTGTAACCTCCTGAGGCTTCACGTAGCAACTTGCTCTTCACAACACAGCGTCAAAGATATCTACAGCAAATTCAAAGAGATGTCTCTCATCAACATCGACGTGACTGCAGCTCTTTGTCGTTTCTGTTCTTTGCCATACACAGATGTGAAACAGATGCGTGAACACGTCATCGATCACGGATACAACTTTGAAACAAGACAGCCGGACGGTGTTCTCCCATTCTGCCTTGATAAAGAATCGTGGAGATGCGTGATATGCCAAGAAAAGTTCAATAACTTTTTAAAACTCTATGAACATATGAATGTACATTATCAGCATTATATTTGTGCTACGTGCGGCAAAGGTTACATGACGGCGCCTAGATTGAGAAAGCATTCAGAAGTGCATATAAGTGGCTTGTTCCCGTGTAATGAATGCGTTCGGACATTTAAAATGCGAGCTGCGAGGGACCATCACAAGGCGCACGCGCATGCAAAAGCGCCAAGATACGAATGCCCCCAATGCAACATGCGTTTCGACGGATACTACGATCGAATGAACCACCTAAACGAGGCACATAGAGAAAAAGAAGTGTCATACAGTTGCCCGCATTGCGAACTTTCATTCAAAACATCGGGGAAGCGAGCAATTCACGTCCGGACAGTTCATTTCCCACCTCAACGCGATTTTGGTTGTCGTTTTTGCGAATGGAACTTTAAAACTGCTTACGAACTTAAAAGGCACATGGTGAAACATACAGGAGAGAGAAATTTCCACTGTAATGTTTGTGAAAAGTCTTTTCCAAGAAATAGAGCTTTAAGGACACACCTAAAGACACATGATGACTTAAGTTGTTCCGCTAGTGCGGTAGCGGAGGCAAAAGTAGGAGTTAGACGAGTTAGGAAGTTAAAGGAGAACGTTAGCGCGCGGCAGATGCGCCGGCGCCGCCGCGCGAACAACGAGTTGCCAGAGGAATCCGAGAAGCGCATATCAAAAACTATGATGCGGAGGAACGCTATGATGCTTCTCGAATGTTCCACCGCTTGGGCCTTCCGATGGTTCCACAGCGCCTTTTACTGCTCTTACTGTGATGCCAAGTTCGTAGACACCGCCCCGTTGCGTGATCACGTCCAAAGCAATCACTTAAACGTACCGCCCACTAAAAAAATATTTGCAAAATTGACTGAAAATAATATGGTTAAGATTGATATAGGGAATCTCAGCTGCCGGCTATGTAATCATCCTTTAACGGACATAGACGATTTGAAAGATCATTTAGTTTCTCTACACGGGAAGATATTAAACTCTGAATATAGTGATGGTGTTTTACCCTTCAAACTTGACCAAAACGGATTCTTTTGCCAAAAGTGCTTCACCCATTTCATAAGTTTTGCAAAAGTGAACGAGCATATTAATAATCATTACAGAAATCACATTTGCGATGCGTGCGGGAAAGCTTTCGTATCTAAATCCAGGTTTCGAACCCACGTGCAGTCACATGAAACGGGGAGTTTCCCCTGTGGGGACTGTGAGGAAATTCTACAGACGCGGGCTGCTAGGATGTGCCATAGGCTGCGGGTGCACAAAAAGGGTGTGCGGTACACTTGTCCTCGATGCCCTGAAGTCTTCACAACATATTATGCTCGCGCAAAACACTTGGTGGACGATCATGCTCAACAACAAAGAGATTATGATTGCACCATTTGCGGAAAATCATTTGATACTAGCTGTAAAAGAGCAGCACATTTCCGAACCGCCCACAAACCTGCTGAGAAACGATACGAATGCCCTCATTGCCACTGGCGCTTTTATTCCACTTCTAAGCTCCGACGCCACATAATGACACACACAATGGATTGCCTGGCCGTCCCCAAAGCATCAGAGAATTGCGACGCGTCGGTTAAAATAAAATGGAGACGGAAAAGGAAAGTGGTGGAGGATAAAGCGAATGCGGCTCTTATTCTAGAATATTCTAATGCTGTTGTGTTTAGATGGCAGCGTGGGAAATTTATGTGCGCATATTGCCCTGCTATCTGTGCCAATGTGAGCGACGTACGCGTCCACTCAAAAATTCATACCAACAGACTCGACGTGTTCGAAAATCAGGAAGTAAGGAACTCGTTTCCCCTCCGAATAGATATAACTGATCTCACATGCGCTATATGCTATCAAAAAGTCAAGGAGCTAAAGGATCTCAAAATGCATTTATCGGAAACGCATTCCAAGGAATTCAAATCAGAGTGCAGCGACGGTGTCATACCATTTGTACTAACGGGAAAGGAATACAAATGCGTCCACTGTGATCTGCTTTTCGAAGGGTTCATGAGTCTATTCATTCACATGAATAAGCATTATCAAAGTTATATTTGTCATACTTGCGGAAAGGGATATTCGGGAAAGCATAAGTTGAGAGCACATCAAATGTGTCATGAGTTAGGACAATTTGCTTGTCCCAAATGCGAGGCCGTGTTTCCAAATAGAGTAGCCAAAAATAGACATATTTCTACCGCGCACGGGTCAAAGAAAAGATATCGCTGCCCTATCTGTGATGAGCATTTTGATTCCTACCATTCTAGGTTAAGGCATTTGGACAAAACGCACGGGCAGAAGGCTGAGTATCGTTGTAGCTTGTGTCCTTCTGTGTTCGGGTTCATCGACCTCAAACTTAAATGGAAACCGAAGCGCAAGTATAACGATCATAGAGACAACGCGGCTATTATAATTGAGTGTTCCAACGTCTGCCCGTTCAGGTGGAAGAGAGGCACTTTCACCTGCGCGTTCTGTCCAATTTCCTTTGGAGACTTTAGCAGCGTGAGAGAACATGCGCTTGAGCACCCGAACCGGGTCGAGGCAATGCGTCTCGCGCGCCCCCTAGACAACGTCAAAGTAGAAATCAGTGATCTACGCTGCGAACTCTGCCTACTGCTAATCAAAGATGTAGAAACACTGAAGGACCATTTGCTCAAAACCCACAATAAACCGATAAGCAACGATCATAGCATCGGCGTCACTCCCTTTTTAATTAAAGGAAAGGATTTTCTTTGCACGCACTGCAACGAACACTTTGAGCTTTTCTCAAAATTAAACACACACATGAATCACCATTACCCTAACAACATTTGCTTCCAATGCGGCAAAGCATTTGCCGCTGCTCATAGACTAAAAGCCCATTTAGTTATACACGAATCCTCAAACGTTCTGCAATATAAATGCTCGAAATGTGACGATGTTTTTACGACTAGGGCTTTGAAAAACAGTCACATGGCTTTAACACACGGTCCGGAGTACCGTTATAGGTGTCCTTACTGCAACGACTCATTTTTACGGTACGCGGATAGAGCCAAACATTTGAAAGTCGCGCATGATAGGAAAGTAGAATACCCTTGCCATTTATGTACAGCTGTTTTTTCCATGTGCAATCAACGCACGAAGCATATACAACAAGTCCATATAAGGCATAAGCAATTCTTCTGCGCGTTGTGTCCCTACCAATTCGTCACAGCGGCTCAGCTTAGGAACCACATGGTCAAACATATAGGAGAGAGAAAGTACCAATGTCAAGTTTGTAAAAAATCCTACGCGAGAACCAAAACGTTGAGGGAGCACATGCGTATACATAATAATGATAAGCGATTTGTATGCGAATTTTGTAACAGACGGAAAAGTGAAGAGGGCATTAAACAGGAAGTGATGTCGGACTCGGAGGGCATTTCCACTATCCGCGTCGCTGCAGACCGAGTCGAGGCCGAACAGAAGCGAGCCAGTTTCAGAAATAACATGTCTGCTATCGTAGGCACCTCCACAGCCTACCCGTTTAAATACAGAAGAGGGATTTATCTCTGTTACTACTGTAAACACACATTTATAGAACCAGAAAAGCTCCGACATCACAACCGAGTTTACCATGCCGAACCAAAGCTAATGCTCAAACCTAGAAAATATGAACCATTGAAAGTGGATTTCGTGGACGCCTTGTGCAAGGTCTGCTTTGTTCAAATAGACAGCTACGAAATGCTGAAAACACATCTGCCTGCACACGGTAAATACATAGACATGACACACGGAGAAACGATACTTCCGTACAAACTGGGGATGGAAGAGCAAATATGCCAAATATGTGGGAAAATGTACGAGGTGTTCTTGACTTTACACAAACACATGAATGACCATTACGAGCATTATATATGTGAAAAATGCGGCAAAAGGTTCGCAACGTCTCAACGAATGCTCAACCACATAAAAACGCACGAAGAAGGCGTGTTTCCCTGCAAGCACTGCGGTGAAACCTTTACCACATACGCACCTCTGTACAGCCACATTGCAAGAGTGCACAAGTCTAATAAAAGATACAAATGCCCAATATGCAACGAAAAGTTTATCTCTTACAAACAGAGGATAAAGCATCTGCACACGGTACACGAGCAAAAAACGCCACTGTTTCCTTGCCCTTCATGTGATAGAGTATTTGATTTATGCAGTAAGAGATCAGCGCATATCAGGTTCCAACACTTGCAAGAACGAAACCATGTTTGCAGCGTGTGTGGCATGAAGTTTTTCAGTAACTATGAACTCCAAGAGCACACAATCAAACATGATGGCGACAGAATTTACCAATGCGACATCTGTAAGAAGTCGTACGCTCGACTAAAAACTTTACGGGAACACATGCGAATACATAACAATGACAGGCGATACACCTGTTCTGTTTGTGGACAAACGTTTATCCAGAAATGTAGTATGAAACAGCACATGAGAGTACATCATCCAACTCATTTGTAG
- Protein Sequence
- MYAGRSQTEHETVIKVEATDVPIEHLLKEKPRYQRSARAEARLATKKNATAILECWSVVPFRWKRNQFKCAYCEANFTDCNLLRLHVATCSSQHSVKDIYSKFKEMSLINIDVTAALCRFCSLPYTDVKQMREHVIDHGYNFETRQPDGVLPFCLDKESWRCVICQEKFNNFLKLYEHMNVHYQHYICATCGKGYMTAPRLRKHSEVHISGLFPCNECVRTFKMRAARDHHKAHAHAKAPRYECPQCNMRFDGYYDRMNHLNEAHREKEVSYSCPHCELSFKTSGKRAIHVRTVHFPPQRDFGCRFCEWNFKTAYELKRHMVKHTGERNFHCNVCEKSFPRNRALRTHLKTHDDLSCSASAVAEAKVGVRRVRKLKENVSARQMRRRRRANNELPEESEKRISKTMMRRNAMMLLECSTAWAFRWFHSAFYCSYCDAKFVDTAPLRDHVQSNHLNVPPTKKIFAKLTENNMVKIDIGNLSCRLCNHPLTDIDDLKDHLVSLHGKILNSEYSDGVLPFKLDQNGFFCQKCFTHFISFAKVNEHINNHYRNHICDACGKAFVSKSRFRTHVQSHETGSFPCGDCEEILQTRAARMCHRLRVHKKGVRYTCPRCPEVFTTYYARAKHLVDDHAQQQRDYDCTICGKSFDTSCKRAAHFRTAHKPAEKRYECPHCHWRFYSTSKLRRHIMTHTMDCLAVPKASENCDASVKIKWRRKRKVVEDKANAALILEYSNAVVFRWQRGKFMCAYCPAICANVSDVRVHSKIHTNRLDVFENQEVRNSFPLRIDITDLTCAICYQKVKELKDLKMHLSETHSKEFKSECSDGVIPFVLTGKEYKCVHCDLLFEGFMSLFIHMNKHYQSYICHTCGKGYSGKHKLRAHQMCHELGQFACPKCEAVFPNRVAKNRHISTAHGSKKRYRCPICDEHFDSYHSRLRHLDKTHGQKAEYRCSLCPSVFGFIDLKLKWKPKRKYNDHRDNAAIIIECSNVCPFRWKRGTFTCAFCPISFGDFSSVREHALEHPNRVEAMRLARPLDNVKVEISDLRCELCLLLIKDVETLKDHLLKTHNKPISNDHSIGVTPFLIKGKDFLCTHCNEHFELFSKLNTHMNHHYPNNICFQCGKAFAAAHRLKAHLVIHESSNVLQYKCSKCDDVFTTRALKNSHMALTHGPEYRYRCPYCNDSFLRYADRAKHLKVAHDRKVEYPCHLCTAVFSMCNQRTKHIQQVHIRHKQFFCALCPYQFVTAAQLRNHMVKHIGERKYQCQVCKKSYARTKTLREHMRIHNNDKRFVCEFCNRRKSEEGIKQEVMSDSEGISTIRVAADRVEAEQKRASFRNNMSAIVGTSTAYPFKYRRGIYLCYYCKHTFIEPEKLRHHNRVYHAEPKLMLKPRKYEPLKVDFVDALCKVCFVQIDSYEMLKTHLPAHGKYIDMTHGETILPYKLGMEEQICQICGKMYEVFLTLHKHMNDHYEHYICEKCGKRFATSQRMLNHIKTHEEGVFPCKHCGETFTTYAPLYSHIARVHKSNKRYKCPICNEKFISYKQRIKHLHTVHEQKTPLFPCPSCDRVFDLCSKRSAHIRFQHLQERNHVCSVCGMKFFSNYELQEHTIKHDGDRIYQCDICKKSYARLKTLREHMRIHNNDRRYTCSVCGQTFIQKCSMKQHMRVHHPTHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -