Axyl001572.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387370.1:12347158-12366444[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 43 0.0065 0.47 11.8 0.4 2 22 149 169 148 169 0.95 2 43 0.00027 0.019 16.1 0.9 1 23 232 254 232 254 0.97 3 43 5.9e-06 0.00043 21.3 3.4 1 23 263 285 263 285 0.98 4 43 9.8e-05 0.0071 17.5 0.5 1 23 291 313 291 313 0.97 5 43 8.3e-05 0.006 17.7 2.0 1 23 322 344 322 344 0.97 6 43 0.0015 0.11 13.8 0.2 1 23 350 372 350 372 0.95 7 43 1.1e-06 8.4e-05 23.6 3.4 1 23 381 403 381 403 0.97 8 43 0.00027 0.019 16.1 0.9 1 23 409 431 409 431 0.97 9 43 5.2e-05 0.0038 18.4 2.3 1 23 440 462 440 462 0.97 10 43 0.0002 0.014 16.5 0.3 1 23 468 490 468 490 0.95 11 43 1.8e-07 1.3e-05 26.1 1.9 1 23 499 521 499 521 0.97 12 43 0.00038 0.027 15.7 0.6 1 23 527 549 527 549 0.97 13 43 5.9e-06 0.00043 21.3 3.4 1 23 558 580 558 580 0.98 14 43 9.8e-05 0.0071 17.5 0.5 1 23 586 608 586 608 0.97 15 43 9.1e-06 0.00066 20.8 3.1 1 23 617 639 617 639 0.98 16 43 0.0002 0.014 16.5 0.3 1 23 645 667 645 667 0.95 17 43 3.5e-05 0.0025 18.9 1.6 1 23 676 698 676 698 0.96 18 43 0.0002 0.014 16.5 0.3 1 23 704 726 704 726 0.95 19 43 1.8e-07 1.3e-05 26.1 1.9 1 23 735 757 735 757 0.97 20 43 0.00038 0.027 15.7 0.6 1 23 763 785 763 785 0.97 21 43 5.9e-06 0.00043 21.3 3.4 1 23 794 816 794 816 0.98 22 43 9.8e-05 0.0071 17.5 0.5 1 23 822 844 822 844 0.97 23 43 8.3e-05 0.006 17.7 2.0 1 23 853 875 853 875 0.97 24 43 0.0015 0.11 13.8 0.2 1 23 881 903 881 903 0.95 25 43 3.5e-05 0.0025 18.9 1.6 1 23 912 934 912 934 0.96 26 43 0.0002 0.014 16.5 0.3 1 23 940 962 940 962 0.95 27 43 1.8e-07 1.3e-05 26.1 1.9 1 23 971 993 971 993 0.97 28 43 0.00038 0.027 15.7 0.6 1 23 999 1021 999 1021 0.97 29 43 5.9e-06 0.00043 21.3 3.4 1 23 1030 1052 1030 1052 0.98 30 43 9.8e-05 0.0071 17.5 0.5 1 23 1058 1080 1058 1080 0.97 31 43 9.1e-06 0.00066 20.8 3.1 1 23 1089 1111 1089 1111 0.98 32 43 0.0002 0.014 16.5 0.3 1 23 1117 1139 1117 1139 0.95 33 43 3.5e-05 0.0025 18.9 1.6 1 23 1148 1170 1148 1170 0.96 34 43 0.0002 0.014 16.5 0.3 1 23 1176 1198 1176 1198 0.95 35 43 1.8e-07 1.3e-05 26.1 1.9 1 23 1207 1229 1207 1229 0.97 36 43 0.00038 0.027 15.7 0.6 1 23 1235 1257 1235 1257 0.97 37 43 5.9e-06 0.00043 21.3 3.4 1 23 1266 1288 1266 1288 0.98 38 43 9.8e-05 0.0071 17.5 0.5 1 23 1294 1316 1294 1316 0.97 39 43 1.1e-06 8.4e-05 23.6 3.4 1 23 1325 1347 1325 1347 0.97 40 43 9.8e-05 0.0071 17.5 0.5 1 23 1353 1375 1353 1375 0.97 41 43 0.00011 0.0082 17.3 1.6 1 23 1384 1406 1384 1406 0.97 42 43 0.0002 0.014 16.5 0.3 1 23 1412 1434 1412 1434 0.95 43 43 1.5e-06 0.00011 23.2 2.3 1 23 1443 1465 1443 1465 0.97
Sequence Information
- Coding Sequence
- ATGGAGCACGAGGTCAAGCAGGAGCCGCCGCAGCCGCCCGACGCCGCCGCGGCGCCGCCAGTTGACAGAGCAGAGCCGTGTCCGGTGAAGCAGGAGCGCAGCGACGACGCCAACGACGATGCCGCAGCGCTGCCAGTTGACGGAGCCGAGCCGAGCACGGTGAAGCAGGAGAGCAGTGCCGCGGCAACGGACGGCTTGGAGGACTCCTGCGCCAGTAGCGAGTGTTCGGGAGAGCACCTCAAGGAGGAGCCTGCAGCTGCTGCCGGCTGCAATGCAGAGCTTCTTATGTTTATGCTCAGGCCTTGCACTGTCCGCCTCGAGCGCGCCCGAGTGGATGAGTACTGCGCGCCACGCCCCAGACCACACAATGACGCCCACGAGCCTGACTGTACTAGTGCAATGCGTCAAGTACCCGCGAGAACTCACGCGCAGACGGAAACGTTGTCGTGTGACAGTTGCAGCGCACAGTTCACACAAAAAGATAAATTAGTTAGACATTTAAGAACATGCGCAAGTCAGATTTGGCCAGGATCTAAAAAGCCCACACCCAGTAGGAGTATCACAAAAGAAAAACCATTCTCTTACAATCACTGTCCGGAACAGTTTCTGTCCAAAGCCCGCTTGGCTGTACACAGACGGGCGTGCCCCCGAGAGGCGGGACAGCCGCCTAACAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCGGTTCACGTACAAACGTAATTTAATTGAACATAATGAAACCCACCTGCCTGACGCAATGAAAACAACTTTTTCCTGCGATGTTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTGACCATATGCGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAACCCACCTGCCTGACGCAATGAAAACAACTTTTTCCTGCGGTGTTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTGACCATATGGGCAGTCACACGGAGGGGAAGCCTTACAGCTGCGATGTTTGTCTGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAATCCACCTGCCTGTTGCAATGAAACCAACTTTTGCTTGCGATATTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTCGCCACATGCGCAGTCACACGGGGGGAAAGCCTTACAGCTGCGATGTTTGTCAGGAGCGGTTCACGTACAAACGTAATTTAATTGAACATAATGAAACCCACCTGCCTGACGCAATGAAAACAACTTTTTCCTGCGATGTTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTGACCATATGGGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTCTGTCAGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAATCCACCTGCCTGTTGCAATGAAACCAACTTTTGCTTGCGATATTTGTAACAAAAACTTTACACAAAAGTCTAACTTATATACCCATATGCGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCAGTTCACAGACAAACGTAATTTACTTGAACATAATGAAACCCACCTGCCTGACGCAATGAAAACAACTTTTTCCTGCGATGTTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTGACCATATGCGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAACCCACCTGCCTGACGCAATGAAAACAACTTTTTCCTGCGGTGTTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTGACCATATGCGCAGTCACACGGAGGGGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAATCCACCTGCCTGTTGCAATGAAACCAACTTTTGCTTGCGATATTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTGACCATATGGGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTCTGTCAGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAATCCACCTGCCTGTTGCAATGAAACCAACTTTTGCTTGCGATATTTGTAACAAAAACTTTACACAAAAGTCTAACTTATATACCCATATGCGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCAGTTCACAGACAAACGTAATTTACTTGAACATAATGAAACCCACCTGCCTGACGCAATGAAAACAACTTTTTCCTGCGATGTTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTGACCATATGCGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAACCCACCTGCCTGACGCAATGAAAACAACTTTTTCCTGCGGTGTTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTGACCATATGGGCAGTCACACGGAGGGGAAGCCTTACAGCTGCGATGTTTGTCTGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAATCCACCTGCCTGTTGCAATGAAACCAACTTTTGCTTGCGATATTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTGACCATATGGGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTCTGTCAGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAATCCACCTGCCTGTTGCAATGAAACCAACTTTTGCTTGCGATATTTGTAACAAAAACTTTACACAAAAGTCTAACTTATATACCCATATGCGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCAGTTCACAGACAAACGTAATTTACTTGAACATAATGAAACCCACCTGCCTGACGCAATGAAAACAACTTTTTCCTGCGATGTTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTGACCATATGCGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAACCCACCTGCCTGACGCAATGAAAACAACTTTTTCCTGCGGTGTTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTGACCATATGCGCAGTCACACGGAGGGGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAATCCACCTGCCTGTTGCAATGAAACCAACTTTTGCTTGCGATATTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTGACCATATGGGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTCTGTCAGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAATCCACCTGCCTGTTGCAATGAAACCAACTTTTGCTTGCGATATTTGTAACAAAAACTTTACACAAAAGTCTAACTTATATACCCATATGCGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCAGTTCACAGACAAACGTAATTTACTTGAACATAATGAAACCCACCTGCCTGACGCAATGAAAACAACTTTTTCCTGCGATGTTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTGACCATATGCGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAACCCACCTGCCTGACGCAATGAAAACAACTTTTGCTTGCGATATTTGTAACAAAAACTTTACACAAAAGTGTAACTTAGTTCGCCATATGCGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTTTGTCAGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAACCCACTTGCCTGACGCAATGAAAACAACTTTTTCCTGCGATGTTTGTAACAAAAACTTTATACAAAAGTGTAACTTAGTTGACCATATGGGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATGTCTGTCAGGAGCGGTTCACAGACAAACGTAATTTAATTGAACATAATGAAATCCACCTGCCTGTTGCAATGAAACCAACTTTTGCTTGCGATATTTGTAACAAAAACTTTACACAAAAGTTTAACTTATACACCCATATGCGCAGTCACACGGGGGAGAAGCCTTACAGCTGCGATATATGTTGCCTCCAGCCGCTCGGCCTCACGGAGCAGGAGCCTGCTGAGGAGCGCCGCCCCGCCCCCCGGCCCCCGCCGCTCTCACGGAGCAGGAGCCCGCTGAGGAGCGCCGCCCCGCCCCCCGGCCCCCGCCGCTCAGCGCGGACAGGCCCGCGCGCAACTTATATGCGATTTGAATCGCCGATACCTGATAGCCCTGATGGATCACAAATTGTTATATTTATTTTGTTTGATTGA
- Protein Sequence
- MEHEVKQEPPQPPDAAAAPPVDRAEPCPVKQERSDDANDDAAALPVDGAEPSTVKQESSAAATDGLEDSCASSECSGEHLKEEPAAAAGCNAELLMFMLRPCTVRLERARVDEYCAPRPRPHNDAHEPDCTSAMRQVPARTHAQTETLSCDSCSAQFTQKDKLVRHLRTCASQIWPGSKKPTPSRSITKEKPFSYNHCPEQFLSKARLAVHRRACPREAGQPPNSHTGEKPYSCDVCQERFTYKRNLIEHNETHLPDAMKTTFSCDVCNKNFTQKCNLVDHMRSHTGEKPYSCDVCQERFTDKRNLIEHNETHLPDAMKTTFSCGVCNKNFTQKCNLVDHMGSHTEGKPYSCDVCLERFTDKRNLIEHNEIHLPVAMKPTFACDICNKNFTQKCNLVRHMRSHTGGKPYSCDVCQERFTYKRNLIEHNETHLPDAMKTTFSCDVCNKNFTQKCNLVDHMGSHTGEKPYSCDVCQERFTDKRNLIEHNEIHLPVAMKPTFACDICNKNFTQKSNLYTHMRSHTGEKPYSCDVCQEQFTDKRNLLEHNETHLPDAMKTTFSCDVCNKNFTQKCNLVDHMRSHTGEKPYSCDVCQERFTDKRNLIEHNETHLPDAMKTTFSCGVCNKNFTQKCNLVDHMRSHTEGKPYSCDVCQERFTDKRNLIEHNEIHLPVAMKPTFACDICNKNFTQKCNLVDHMGSHTGEKPYSCDVCQERFTDKRNLIEHNEIHLPVAMKPTFACDICNKNFTQKSNLYTHMRSHTGEKPYSCDVCQEQFTDKRNLLEHNETHLPDAMKTTFSCDVCNKNFTQKCNLVDHMRSHTGEKPYSCDVCQERFTDKRNLIEHNETHLPDAMKTTFSCGVCNKNFTQKCNLVDHMGSHTEGKPYSCDVCLERFTDKRNLIEHNEIHLPVAMKPTFACDICNKNFTQKCNLVDHMGSHTGEKPYSCDVCQERFTDKRNLIEHNEIHLPVAMKPTFACDICNKNFTQKSNLYTHMRSHTGEKPYSCDVCQEQFTDKRNLLEHNETHLPDAMKTTFSCDVCNKNFTQKCNLVDHMRSHTGEKPYSCDVCQERFTDKRNLIEHNETHLPDAMKTTFSCGVCNKNFTQKCNLVDHMRSHTEGKPYSCDVCQERFTDKRNLIEHNEIHLPVAMKPTFACDICNKNFTQKCNLVDHMGSHTGEKPYSCDVCQERFTDKRNLIEHNEIHLPVAMKPTFACDICNKNFTQKSNLYTHMRSHTGEKPYSCDVCQEQFTDKRNLLEHNETHLPDAMKTTFSCDVCNKNFTQKCNLVDHMRSHTGEKPYSCDVCQERFTDKRNLIEHNETHLPDAMKTTFACDICNKNFTQKCNLVRHMRSHTGEKPYSCDVCQERFTDKRNLIEHNETHLPDAMKTTFSCDVCNKNFIQKCNLVDHMGSHTGEKPYSCDVCQERFTDKRNLIEHNEIHLPVAMKPTFACDICNKNFTQKFNLYTHMRSHTGEKPYSCDICCLQPLGLTEQEPAEERRPAPRPPPLSRSRSPLRSAAPPPGPRRSARTGPRATYMRFESPIPDSPDGSQIVIFILFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -