Axyl019315.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387355.1:5837755-5838390[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-09 6.4e-06 26.6 0.0 3 40 15 52 14 57 0.92 2 2 5.9 1e+04 -2.9 0.2 19 26 92 99 92 99 0.85
Sequence Information
- Coding Sequence
- ATGCCACGTCATTACAAACGGAAGACTGTAGGATATCAATTTGAAAACCTAAAGAGGGCTGTAGACGACGTTAGAAACAAAAGATTATCAGTAAACAACGCAGTAAAATTTTATGCCGTACCAAGAACTACAATATATGACCATCTCAATGAAGAAATCATAACTCAACCAAGACGTGGCTCTAAATGTATCTTCACCGAAACCCAGGAAAAACGACTAGAAGAGCATATTTTAAAATGTAACCAATTATACAACGTCCTAACAGCAAACTTTGTTCGAAAAGCAGCCTTCAAATATGCAGAAGCGTACAAATTGAAGAATAATTTTGATAAAACTTTAAAAAGGACGGGCAAAGACTGGTATTATGGATTTATGAAAAGACATCCTAATATAATAGTTTTATCAACCAGAAAATTGGAATCAACTGGGGATTTCAGCGAAGCAGAGGTGTTGCGGTTTTTTGATAATCTAATAGCTCAGGAAATAAGAGACAACGTTGACACAGAGATTCAAAGAAATCACGTGCCATTGAGGTTACAACGTAAAAGAAAAAGAGAAAAAGACGAGAGAGGAGCAATAGGAGTCATAAGGACATATAGAAGAAACGCGGTTAACAGAAGAGATGGAGAAATGTGA
- Protein Sequence
- MPRHYKRKTVGYQFENLKRAVDDVRNKRLSVNNAVKFYAVPRTTIYDHLNEEIITQPRRGSKCIFTETQEKRLEEHILKCNQLYNVLTANFVRKAAFKYAEAYKLKNNFDKTLKRTGKDWYYGFMKRHPNIIVLSTRKLESTGDFSEAEVLRFFDNLIAQEIRDNVDTEIQRNHVPLRLQRKRKREKDERGAIGVIRTYRRNAVNRRDGEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -