Acra022964.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402055.1:1403607-1432969[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.9e-05 0.006 17.6 0.1 2 23 317 338 316 338 0.97 2 13 0.003 0.21 12.7 0.1 1 23 344 366 344 366 0.96 3 13 1.1e-05 0.00077 20.4 0.5 1 23 372 394 372 394 0.97 4 13 7.9 5.3e+02 2.0 0.2 1 10 405 414 405 417 0.87 5 13 7.9 5.3e+02 2.0 0.2 1 10 502 511 502 514 0.87 6 13 7.9 5.3e+02 2.0 0.2 1 10 599 608 599 611 0.87 7 13 7.9 5.3e+02 2.0 0.2 1 10 696 705 696 708 0.87 8 13 7.9 5.3e+02 2.0 0.2 1 10 782 791 782 794 0.87 9 13 7.9 5.3e+02 2.0 0.2 1 10 868 877 868 880 0.87 10 13 7.9 5.3e+02 2.0 0.2 1 10 954 963 954 966 0.87 11 13 7.9 5.3e+02 2.0 0.2 1 10 1115 1124 1115 1127 0.87 12 13 1.3 85 4.5 1.7 4 23 1179 1201 1176 1201 0.87 13 13 0.0016 0.11 13.6 0.5 1 23 1206 1230 1206 1230 0.92
Sequence Information
- Coding Sequence
- ATGATCCGCACATACACGCGCAAGCCTCCGGAATGCCGGTACATCGAGGGGGTGCTGGGACTATGCCGCCTGTGCCTGCAGAGGGCTGAGGCTGAGGAAGCCGTGCCGATCTTCACAGAAGACCGCACCGACATCTGTTCGTCGCTTGCCCTCAGAATCATGATTTGTGTAGGATTAGAGTTAAAACGAGAGGACACCCTTCCAAACCGTATTTGTCTTCGTTGTTATAAAGACCTGGAGCAATGTTATGCATTCCGTAAAAAATGTGAGGTATCCTACCAGAAGTTGAAGTACCACATCCAAGCTATACAGAATAGGAAAGTCACAGAAGCCCTGACATTAGCGACTGAAGAGGCAATCAAGCAGATAGATGGGAAGAGTCAGGAGGAAAATGTGAATGTTGATGAATTGGAGCTGATGATGGGAAGTGAGGAGAGCTATGGAATTTTGGAGATAGACGCTGCGCCTGTGATAAACGATGTGCCAAGTGATATTCCTATTGAAACAAAGGTGACAGTTGCTAAGGATGTCCCCGCCGCGAAGGCTGAGGAGCTGCCGGGCATGCTGGCCGCGGTGCTGGTGAGCCTGGGGCTGCTGCGCCGCGCCGGGCCGCTGCTGGCGCGCCGCAGCCCGCACCCCACGCACCTGCAGCTCGAGACCGCCGACGGCGCCGTCGTCAGGATGGAAGTGGTGGAGGAGGACGACGAAACAGCGGGACATGTCGAGACCACCGACGGCGCCGTCGTGAGGATGGAAATGGTGGAGGAGGACGAAACAGCGGGACATGAGAGGGATGGATCCCAGGCGGATGCTGATTTCCGCCTTGTACCGGAGAACCAGAACGTCCAAAAGATGTCTGCCGCTGTCCAAGGCGAGACCAAAGTCGTCAATGAGGTCAAGACTAAGAAGACGCCGCGAAGAAGAGGCGGCGGCGGCGGCGGCGGCGTGGAGTGCTCGTGGTGCGGGCGCGTGCTGGCCTCGCTGTCGGCGCTGCGCCGGCACGCGCGCACGCACTCCGGCGAGAAGCCCTTCGCCTGCCCGCGCTGCCCGCGCCGCTTCGCGCAGCGCGAGGTCATGCGCCGGCACGCGCTCGTGCACGACGAGGTGCGGCCGCACCAGTGCCCCTCGTGCCCCAAGAGCTTCACGCAGCGCGGCGCCCTGCTGCTGCACCTGCGCGCGCACCGCCCGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACGAGCGCGCGCTGCCGCTGCACGCCTGCCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCAGCTACCTACACGACTGCAGACTGTTGCCGCACTGCCCCAAGCTGTTCCTGTACTCCTCAGGTCTGTCGCGGCACGTGATGTCGCACTTGGGGCGGCTGTACGAGTGCGGCGCGTGCCGCAAACAGTTCTCCGACAAGAGTTCCGTGCTGCGGCACGTGCGCCGCGCCAACCACGCGCCCGCCGCAGCCGCCGCAGCCGCCGACGCGACACCGCGCAGCCAACCACAGAGCTAA
- Protein Sequence
- MIRTYTRKPPECRYIEGVLGLCRLCLQRAEAEEAVPIFTEDRTDICSSLALRIMICVGLELKREDTLPNRICLRCYKDLEQCYAFRKKCEVSYQKLKYHIQAIQNRKVTEALTLATEEAIKQIDGKSQEENVNVDELELMMGSEESYGILEIDAAPVINDVPSDIPIETKVTVAKDVPAAKAEELPGMLAAVLVSLGLLRRAGPLLARRSPHPTHLQLETADGAVVRMEVVEEDDETAGHVETTDGAVVRMEMVEEDETAGHERDGSQADADFRLVPENQNVQKMSAAVQGETKVVNEVKTKKTPRRRGGGGGGGVECSWCGRVLASLSALRRHARTHSGEKPFACPRCPRRFAQREVMRRHALVHDEVRPHQCPSCPKSFTQRGALLLHLRAHRPPHERALPLHACPHCPKLFLYSSGQLPTRLQTVAARARAAAARLPALPQAVPVLLRSATYTTADCCRTSARCRCTPARTAPSCSCTPQVSYLHDCRLLPHERALPLHACPHCPKLFLYSSGQLPTRLQTVAARARAAAARLPALPQAVPVLLRSATYTTADCCRTSARCRCTPARTAPSCSCTPQVSYLHDCRLLPHERALPLHACPHCPKLFLYSSGQLPTRLQTVAARARAAAARLPALPQAVPVLLRSATYTTADCCRTSARCRCTPARTAPSCSCTPQVSYLHDCRLLPHERALPLHACPHCPKLFLYSSGQLPTRLQTVAARARAAAARLPALPQAVPVLLRSATYTTADCCRTAPSCSCTPQVSYLHDCRLLPHERALPLHACPHCPKLFLYSSGQLPTRLQTVAALPQAVPVLLRSATYTTADCCRTSARCRCTPARTAPSCSCTPQVSYLHDCRLLPHERALPLHACPHCPKLFLYSSGQLPTRLQTVAARARAAAARLPALPQAVPVLLRSATYTTADCCRTAPSCSCTPQVSYLHDCRLLPHERALPLHACPHCPKLFLYSSGQLPTRLQTVAALPQAVPVLLRSATYTTADCCRTSARCRCTPARTAPSCSCTPQVSYLHDCRLLPHCPKLFLYSSGQLPTRLQTVAARARAAAARLPALPQAVPVLLRSATYTTADCCRTAPSCSCTPQVSYLHDCRLLPHERALPLHACPHCPKLFLYSSGQLPTRLQTVAALPQAVPVLLRSATYTTADCCRTAPSCSCTPQVSYLHDCRLLPHCPKLFLYSSGLSRHVMSHLGRLYECGACRKQFSDKSSVLRHVRRANHAPAAAAAAADATPRSQPQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -