Acra000360.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402070.1:11593231-11602189[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.9 4e+02 2.4 7.9 1 23 33 55 33 56 0.95 2 15 1.6 1.1e+02 4.2 3.0 1 11 87 97 87 101 0.88 3 15 1.6 1.1e+02 4.2 3.0 1 11 130 140 130 144 0.88 4 15 0.00054 0.037 15.1 1.3 1 23 173 196 173 196 0.96 5 15 1.6 1.1e+02 4.2 3.0 1 11 201 211 201 215 0.88 6 15 1.6 1.1e+02 4.2 3.0 1 11 244 254 244 258 0.88 7 15 8.1e-06 0.00055 20.8 1.8 1 23 287 310 287 310 0.93 8 15 6.5e-05 0.0044 18.0 2.5 1 23 316 340 316 340 0.97 9 15 1.6e-05 0.0011 19.9 1.2 3 23 354 374 352 374 0.95 10 15 0.0018 0.12 13.4 0.5 2 23 381 403 380 403 0.92 11 15 8.3e-05 0.0056 17.7 0.8 2 23 413 435 413 435 0.97 12 15 1e-05 0.00071 20.5 1.9 1 23 442 465 442 465 0.96 13 15 0.065 4.4 8.6 3.4 6 23 477 494 475 495 0.93 14 15 0.00061 0.041 15.0 4.4 5 23 507 525 504 525 0.96 15 15 0.00064 0.043 14.9 0.6 1 23 530 553 530 553 0.95
Sequence Information
- Coding Sequence
- ATGCCGGCGGCGGCGCTCCTCCCCCCCCGCCCCTCCATGCACACCGCGCAGCGCCGCGCGGGCCGGCGCAGCCAGCTCTGTGACGAGGCGGGAGACCACGAGTGCGACATATGCCACTGTCGCTCTCGCACCGCGGACATCTTATACCGGCACCGTCTGCGCCACCACCGCCGCTACCGCTGCACGCGCTGCCACAAACTGCATAAGGACAAGGAGACAGCTGCCAGCCACGTCATGAGCCGCCACACGCGGCTGGCCTTCACCTGCCCGCACTGCCGCAGGGCGTTCAATGAGTGCTATACACCGTGTGCCACGCGCTGCCACAAGCTGCACAGAGACAAGGAGACAGCTGCCAGCCACGTCATGAGCCGCCACACGCGGCTGGCCTTCACCTGCCCGCACTGCCGCAGGGCGTTCAATGAGTGCTATACACCGTGTGCCACGCGCTGCCACAAGCTGCACAGAGACAAGGAGACAGCTGCCAGCCACGTCATGAGCCGCCACACGCGGCTGGCCTTCACCTGCCCGCACTGCCGCAGGGCGTTCAAAGACAAGGAGACAGCTGCCAGCCACGTCATGAGCCGCCACACGCGGCTGGCCTTCACCTGCCCGCACTGCCGCAGGGCGTTCAATGAGTGCTATACACCGTGTGCCACGCGCTGCCACAAGCTGCACAGAGACAAGGAGACAGCTGCCAGCCACGTCATGAGCCGCCACACGCGGCTGGCCTTCACCTGCCCGCACTGCCGCAGGGCGTTCAATGAGTGCTATACACCGTGTGCCACGCGCTGCCACAAGCTGCACAGAGACAAGGAGACAGCTGCCAGCCACGTCATGAGCCGCCACACGCGGCTGGCCTTCACCTGCCCGCACTGCCGCAGGGCGTTCAAGCGACCGGCGTATTTAAAAAAACACGTGGCGCAGCAACACGACAAGAGCGAACGCCACGAGTGTCCCGAGCCCGACTGCAGAAGAGTATTTCACGACAAATCCGCTCTGCGCTCGCACTACAGACGTCATAATGACGAGACCCACCGTCTGGTCGGACAGCCTGTCATATGCGACACGTGCTCCCGCAAGTTTCCGTCTAAGTCACACCTCCGACGGCATATAGTGGTGCACCAAACCGAGCGCGGGCTGCCGTGCTTGCACTGCGGCGCCGAGTTCACCACGCAGCGCGGCCTCCGTCTGCACGTCAGCAATCAGCACACCGGCCGGCCCAACGCGGCGCACGCGCAGTGCCCCGAGTGCGCGCGCACCTGCACGACGCCCGCGCTGCTGCGACTGCACATCCGTAGGATGCACTCCGACCGCACCAAGAAGTACCAGTGCGACGACTGCAAGCGCTGCTACTACAGCAAAGGCGAGCTGCGCGCGCACATCCAGTGGACGCACACGCGCAGCCGCGCGCCCGCGCACGCCTGCCGCTGCGGACAGGTGTTCCGCACACGCACAAGGCTCAGGAATCACGTTAATTTGCACCATCTGAAGATAGTGCCGGAAAGAACGCACTTTTGCCACTGCGGGAAAGGATTTTCGAGTAAATCCGTCCTGGCCCGCCACATGAAGAGCCACGAAGGCCTAACCTACCCCTGCCCGGAGTGCGGCCTCCGCTTCAAGTCGGAGCCCTACGTCAAAGTCCACCACCAACTGAAACACTTGAACATGTCCAGGGCCGAAATCAAAGCCCTAAAGAAGCCGAGAGAGATACACTTCCTGGAAGGCAATAAGATAAAGACCGTCGTGCTATCTGGTACTAAAAGAGAGAAAAAGAAGATGATAAAAGATGCTGAGATTGTCGACGACGCCGCGCCCGAGCCGGATAAGTTGAGCGTGCCGCTGTTTGACTTTGTCGACTTGAAAATGGAAATCGATTGA
- Protein Sequence
- MPAAALLPPRPSMHTAQRRAGRRSQLCDEAGDHECDICHCRSRTADILYRHRLRHHRRYRCTRCHKLHKDKETAASHVMSRHTRLAFTCPHCRRAFNECYTPCATRCHKLHRDKETAASHVMSRHTRLAFTCPHCRRAFNECYTPCATRCHKLHRDKETAASHVMSRHTRLAFTCPHCRRAFKDKETAASHVMSRHTRLAFTCPHCRRAFNECYTPCATRCHKLHRDKETAASHVMSRHTRLAFTCPHCRRAFNECYTPCATRCHKLHRDKETAASHVMSRHTRLAFTCPHCRRAFKRPAYLKKHVAQQHDKSERHECPEPDCRRVFHDKSALRSHYRRHNDETHRLVGQPVICDTCSRKFPSKSHLRRHIVVHQTERGLPCLHCGAEFTTQRGLRLHVSNQHTGRPNAAHAQCPECARTCTTPALLRLHIRRMHSDRTKKYQCDDCKRCYYSKGELRAHIQWTHTRSRAPAHACRCGQVFRTRTRLRNHVNLHHLKIVPERTHFCHCGKGFSSKSVLARHMKSHEGLTYPCPECGLRFKSEPYVKVHHQLKHLNMSRAEIKALKKPREIHFLEGNKIKTVVLSGTKREKKKMIKDAEIVDDAAPEPDKLSVPLFDFVDLKMEID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -