Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402074.1:10481690-10504665[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.24 16 6.8 1.1 2 23 261 282 260 282 0.96

2 8 0.0092 0.62 11.2 0.8 2 23 290 312 290 312 0.93

3 8 2.2 1.5e+02 3.8 0.5 1 20 316 335 316 338 0.78

4 8 2.1e-05 0.0014 19.6 4.4 2 23 344 366 343 366 0.96

5 8 0.28 19 6.5 0.0 2 21 376 395 376 396 0.91

6 8 0.00088 0.06 14.4 0.3 1 23 424 446 424 446 0.97

7 8 9.9e-05 0.0067 17.4 0.4 3 23 454 475 453 475 0.98

8 8 0.00088 0.059 14.4 0.2 2 23 483 505 482 505 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.24	16	6.8	1.1	2	23	261	282	260	282	0.96
2	8	0.0092	0.62	11.2	0.8	2	23	290	312	290	312	0.93
3	8	2.2	1.5e+02	3.8	0.5	1	20	316	335	316	338	0.78
4	8	2.1e-05	0.0014	19.6	4.4	2	23	344	366	343	366	0.96
5	8	0.28	19	6.5	0.0	2	21	376	395	376	396	0.91
6	8	0.00088	0.06	14.4	0.3	1	23	424	446	424	446	0.97
7	8	9.9e-05	0.0067	17.4	0.4	3	23	454	475	453	475	0.98
8	8	0.00088	0.059	14.4	0.2	2	23	483	505	482	505	0.97

Sequence Information

Coding Sequence: ATGTCTGATATAAAGTTAGAAAGAGATATCGAGGAGTTGCTGGCATGTCGCATTTGCCTCGCAACCGACGTAAAGCTATTTGGAATCTACGAAAACCTACTCGATGAGGCGTTCACGGATATTTTGGGGACAAACCTGTCGCCGTGCGACGGGCTGCCGCAGCGCGCGTGCGCCGCCTGCCGCGACCGGCTGCGGCGCTGCGCCGGGCTGAGGGCGCGCGCGCGCACAGCCGACCTAGCGCTGCGGCGGGCGCTCGCCGAACAACACTATCTCACTAACGACTTCATCCGTTCCATCGACCGCGTCGCACTCGGCCTAACCAACGATGACAAATGCGAAATATACGATTACCCTCAAGCAAAACCAATAGAGCCAGAGCCAAATGACAGCTGTCACTCTGACAGCGACCGCGACGCGGACGTCAAAAGTGACAGCGACGACCTTGCCAGCAGAAGCTGCATAGTAGAAATAGTAGAAAACGTCGCCGAAGTGAAAAGATTGGACGAAAAACTGAAAAAGGATCAAAAGGATAGTAAAAAGAGAAAAACTAAAGAGAAAAAGAAGGTTATCAAAGTTAAGGGTAAACCGGAAGTGGAGTGGGTGGTTAAGAAGAAGCCGGTGCGGAAGAAAAAAGGTTTTAAGAGGTATTTTATGTGTGACGAGGATTATGTTAAGTTTGAAGAGAAGTACAATATTCAAGTGATACGGCTGTCGGAAGAAGAGCAAAAGAGAGAGATGGATGCGCGTAAACACACTGACAGTTATTTGAATGCGCTTCTGAGATGCGAGAAGTGTTACAAAGGTTTTCTGTCCATGTTCACGTATGAGAATCATCTGAAAGTCCACGATCCTGTGTCGGGTGCAAACGAGTGCGCGTTGTGCGGCTGCCGGTTCAAGTGGCCCAACAACCTGCGCACGCACATGATCGAGAACCACCAGCTCAAGTACGTCTGCAAGCAGTGCCAGCGGGTCATCAAGGGCAGGCACGAGGCACTGTTGCACGCAGAATTTCACGCGGGTAAAACCTGGGAATGCAAGCACTGCGGGCGCACCTTCAAGAAGAAGTCGACGTTTTACACGCACGTGCGCATGAACCACGCCTCCGAGCGGGAGGAGGGGGGCGGGGAGTGCGGCGCCTGCGGGGCCTCCTTCAAGGGGGCGCCCGGCCTCAAGCTGCACCAGATCAAGAAGTGCAATAAGAACATGAAGCCTCAGGAGCCGGGTGCCGAGGCGGGCGCTGAGCCGCCGACCCTATGCGCCAGGAAGGGCTTCATCTGCGAAGTCTGCGGGAAGAAGTGCACTTCGCTATCGATCCTGGCGGTGCACCTGCGCGCGCACACGGGCGACCGGCCGCACGGTTGCCCCGGCTGCCCGCTGCGCTTCGCCAAGAAGGACAACATGGAGAAGCACCATCGCGTGGTACATCTGGGCCAGCGTCCGCAAGTAAAATGCGAGCTTTGCGGTAAACTACTAGCGCACGCGGCGTCGCTCAAACTGCACGTGCGCACCGTGCATCTCAAACTACCCGCCCCGCCGCGCGCGCCGCGGGCACCGAGACACAGGAAGAGGAAGATGGAACACATGGAGGGATAG
Protein Sequence: MSDIKLERDIEELLACRICLATDVKLFGIYENLLDEAFTDILGTNLSPCDGLPQRACAACRDRLRRCAGLRARARTADLALRRALAEQHYLTNDFIRSIDRVALGLTNDDKCEIYDYPQAKPIEPEPNDSCHSDSDRDADVKSDSDDLASRSCIVEIVENVAEVKRLDEKLKKDQKDSKKRKTKEKKKVIKVKGKPEVEWVVKKKPVRKKKGFKRYFMCDEDYVKFEEKYNIQVIRLSEEEQKREMDARKHTDSYLNALLRCEKCYKGFLSMFTYENHLKVHDPVSGANECALCGCRFKWPNNLRTHMIENHQLKYVCKQCQRVIKGRHEALLHAEFHAGKTWECKHCGRTFKKKSTFYTHVRMNHASEREEGGGECGACGASFKGAPGLKLHQIKKCNKNMKPQEPGAEAGAEPPTLCARKGFICEVCGKKCTSLSILAVHLRAHTGDRPHGCPGCPLRFAKKDNMEKHHRVVHLGQRPQVKCELCGKLLAHAASLKLHVRTVHLKLPAPPRAPRAPRHRKRKMEHMEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00021732; iTF_00156722; iTF_00462857; iTF_01135258;
90% Identity: iTF_00156722;
80% Identity: -