Acra005187.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402074.1:6087464-6114657[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0069 0.47 11.6 0.7 1 23 195 217 195 217 0.96 2 10 0.016 1.1 10.5 0.1 2 23 222 244 221 244 0.93 3 10 0.0099 0.67 11.1 0.8 3 20 253 270 251 273 0.94 4 10 5 3.4e+02 2.6 0.0 3 11 278 286 276 289 0.86 5 10 0.0002 0.013 16.5 0.7 2 23 303 324 302 324 0.97 6 10 0.024 1.6 9.9 0.4 3 21 334 352 333 357 0.93 7 10 0.013 0.86 10.8 3.1 1 19 365 383 365 388 0.92 8 10 0.001 0.069 14.2 1.8 1 23 394 417 394 417 0.97 9 10 0.00012 0.0084 17.1 1.7 1 23 424 446 424 446 0.98 10 10 0.00071 0.048 14.7 1.3 1 23 452 475 452 475 0.96
Sequence Information
- Coding Sequence
- ATGGAGGAAGTGGGAGTCCTAAGAGAAAAAGAGATTGTAAAAAGGGAATCAGGAAATATGTTCAATCAATGCACTGAAGACAGACGCAACAGCGATAACGCGTATTGTGATGAATCCAGTGAAGGAACGGGTGATGGAATGTGGTTTCCAGTTTTAAATAAACAAATAGAAGCAAAAGGTGATGAACGGGTTTCTGGTGAAGCAATAAGCGATGACATAGCTAATGCTAGTTTGAAGTCGTTATTGAGTCGAAAAAGTACGATCGGTATTTCACCTTTACCAATGAATAGTAAAAAACATGATTCAACGGCAGAAGTAGAGGTTATTAAAGAAGTCTCGGAGCGAAAAGAAGCAGCAGAAGTAGAAACAGTAGAACCAAACGCACCAACTGATTCAGAATCCATATATATAGAGACAGTGCTGAGTGAAGAAGAGATGTTAAAATGGAGGGAGAGAAAAAAGGATTTGCCGTACTATGCAACCAAGGCTGCTGCATTAAAATGCACGCAGTGTATCGAGCCGTTCCGGAGCGTGAGGATATACTTGGCGCACTCGAAAAGGCACGAAGAGAGTTACGGTGCGTTCACGTGCCACATTTGCGGGCTGCGTTCGGTTAGTGAGAGGGCACTGAGCGTGCACACTACGCAGCATTACAGGCTGCTGAAGTGTAAGCTATGTGGCTACGAGTGGGACAACCCCAACAATCTGCGGAAACACGGCCTCGTCGCCCACGGGGTACCCGTCACCGTGTGGGACTGCGACCAGTGCGACCGGAAGTATGCGTCATATGTCCAGTTGTCGAGGCATATAGTCTGTCACCGCGTGGTGGCTTGTCCCGTGTGCGGGGAGAGTGTCTCATATACCATCTTTCCACAGCACTTGAGGCTGCACAACAGTGTGATGCAAACGTGCACGGTGTGCGGGAAGAAGTACAAGGGCGACCAGAAACTGGCGATTCATATGAAGACGCACGACCCCAAGGTGGATGAGGCGGCGTATTGCGCGGAGTGCAACATCCAGTTCCGCACCATATACCTGTATCGCTGGCACCTGCGGTACACGCTCAAGCACGCGCGCTCAGACTTCAGGCCGCACAAGTGCGGCGAGTGCGGCAAGTCGTTCCTGACGCGGACGTCGCTCAACATCCACTGCGACAGCCTGCACAGCGCTGATTGCAAGTACAGTTGCAGCGTCTGCGGGCAGAAATTTAAAACTCGTACTCGTAGGAACGACCATGTAAGGAGAGTGCACAAGCGCCCCAACCGGCGGTACATCTGCGACTACTGCGGGAAGCCCTTCACGGCGAAAACAACTCTGAATTGCCACATCAACACGCACACAGGCGAGCGGCCATACCCGTGCACACAGTGCGACGCCACGTTCGGACACAAGAGCGCGCTCTACTTGCACGGCCGGTACAAGCACAAGATAAAGAAGAAAACTGATGCTACATAA
- Protein Sequence
- MEEVGVLREKEIVKRESGNMFNQCTEDRRNSDNAYCDESSEGTGDGMWFPVLNKQIEAKGDERVSGEAISDDIANASLKSLLSRKSTIGISPLPMNSKKHDSTAEVEVIKEVSERKEAAEVETVEPNAPTDSESIYIETVLSEEEMLKWRERKKDLPYYATKAAALKCTQCIEPFRSVRIYLAHSKRHEESYGAFTCHICGLRSVSERALSVHTTQHYRLLKCKLCGYEWDNPNNLRKHGLVAHGVPVTVWDCDQCDRKYASYVQLSRHIVCHRVVACPVCGESVSYTIFPQHLRLHNSVMQTCTVCGKKYKGDQKLAIHMKTHDPKVDEAAYCAECNIQFRTIYLYRWHLRYTLKHARSDFRPHKCGECGKSFLTRTSLNIHCDSLHSADCKYSCSVCGQKFKTRTRRNDHVRRVHKRPNRRYICDYCGKPFTAKTTLNCHINTHTGERPYPCTQCDATFGHKSALYLHGRYKHKIKKKTDAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -