Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402061.1:3815085-3830091[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0037 0.25 12.5 3.8 2 23 361 382 360 382 0.97

2 11 0.28 19 6.6 0.3 2 23 390 412 390 412 0.94

3 11 0.015 1 10.6 2.6 1 23 416 438 416 438 0.96

4 11 0.78 53 5.2 0.0 1 23 443 466 443 466 0.94

5 11 0.0017 0.12 13.5 0.1 2 23 471 493 471 494 0.94

6 11 0.002 0.14 13.3 0.6 1 22 505 526 505 530 0.94

7 11 0.011 0.72 11.0 0.4 3 23 550 571 549 571 0.93

8 11 0.34 23 6.3 1.9 2 23 590 612 589 612 0.94

9 11 0.00037 0.025 15.6 1.2 2 23 626 647 626 647 0.97

10 11 0.00066 0.044 14.8 0.2 2 23 653 674 652 674 0.92

11 11 0.00077 0.052 14.6 0.8 1 21 680 700 680 701 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0037	0.25	12.5	3.8	2	23	361	382	360	382	0.97
2	11	0.28	19	6.6	0.3	2	23	390	412	390	412	0.94
3	11	0.015	1	10.6	2.6	1	23	416	438	416	438	0.96
4	11	0.78	53	5.2	0.0	1	23	443	466	443	466	0.94
5	11	0.0017	0.12	13.5	0.1	2	23	471	493	471	494	0.94
6	11	0.002	0.14	13.3	0.6	1	22	505	526	505	530	0.94
7	11	0.011	0.72	11.0	0.4	3	23	550	571	549	571	0.93
8	11	0.34	23	6.3	1.9	2	23	590	612	589	612	0.94
9	11	0.00037	0.025	15.6	1.2	2	23	626	647	626	647	0.97
10	11	0.00066	0.044	14.8	0.2	2	23	653	674	652	674	0.92
11	11	0.00077	0.052	14.6	0.8	1	21	680	700	680	701	0.95

Sequence Information

Coding Sequence: ATGGTGGCATATTGCTGTGTTAAAGGTTGCAATAACAATAGCAGCAACAAGAAGAAAAATCCCAATGATATCACATCGTTTCACGCCTTTCCCACAAACATTGAACTGAAGCAAAAATGGGTCCGAGCCATCGGTAGACCAAACTGGATGCCACCAAATTACGCTCGTGTGTGCAGCGCGCATTTTAGCTACGAACAGATAAATCATGATGGCCGAAGGATAAGGATCAAGGATGATGCTGTACCGGTTAAGGATTTGCCTGTCAACTCCAACTTTGAGGCATCTCATGTAGAAGTTTGTCGATTCTGCCTTGCAGCTGATCTGAAGCTATACAGCCTCCAGAGTGGAGTGCACAGAATGTACATGGATTCACTTGCAGGATATAATGAGAACTGTACCATTGAAGGTCTCCCACAATTTATATGCTACGAATGTGCAGCTTATCTAAGGAAATGCTACAACCTAATAGAGAAAAGTATGATAGCACAAGCAACTTTACTTGACATATTTGCTCATAATGGCAAGATAACAAAAAATCTCGTCGAACGAGAAAATAGAAAGGAACTCAATCTAATATCATCATTGGGGATTCAAGATATTAACACAAATAGAGTAGAATTTAAAGATAGTTCAGAAATCCTAAATGTTGATAATACTCAGAATGATGATGAAAACAGTAGCAGTAAAACTGTTGTTAATTTTATTGAAGTACCTAAAATAGAAGTAACCAATTTCACACGACCTGAAGAAGTAAATGTAATTGATGACTATAATGCGATAGATGCAAATTTTCATGAAGATAGTGATAAAAGTGATGACAAATCCGAATGTTCAATTTCTGAAATTAATTGCACTGAAAACTTAAATTTAGATGCTGAATTAAAACCGGAAGTAGTTAAGATAATTCATGAAGAAACAAGAACTTCTAAAAGAACAGGAAAGAAGTCAAATAAAGAGGGGCTGACGCCAGATGAAGTGGAAATGCAGAAGCACTTTACTATAGTAAAATTAACGTTAGAGCAACAAATCGAAGGATGGAACAGAACCAAAGCAGACACGGTATCCAGCGACGAAACTTTGAAATGTCAAATCTGTTCCAAAATATTTGCACATCACAACACTTATCAACTGCACATTCTAAGGCATGAACCAAGTCGAGGCAAAGCCGAGTGTGCTGTCTGCAAGCTTCGGTTTAAGAACGAAGTGTTGGCGAAGTCCCACGCCAATCGAACTCACGGAAAGAAGTTTTACTGCAAAACTTGCCCTAAGACTTTTAATAATGTTGGCGTAGCAAAGAAGCACCACAAATGGCACTCGGGGCACTTGTACGCGTGCGGCTCGTGCCCGTTCGCGAGCGCGCACGCGTCGGCGCTCGGCGCGCACGCGCGCGCGCAGCACGCCGGCGCGGCCGTGTGCGCGGTCTGCGGCCGCGCGTTCGTCAGCGCCAAGGGACTCACACTACACGCCGCTACGGTGCACCACGACAACACCGATCAAGAAGAAAGCTTGCCGTATCGCTGCCAGGAGTGTGACCTCAACTTTAAGACGGAAGGCGCGAGGCGTGTCCACATGCTGACTTCCAAACAACACAAGACAAAAAAAAGTTTTTGTGATTCAACGCCGCAAGACCCAAGTCTAAAGAACTGTTGCAACAAATGCGGCGTCGAGTTCCCTTCGTTGAAGCAGCTGGTGGAACACGGGAGAGCGGAGCACGGGCGGGCGAGGAAGAAAACCAGCTGGAGTCTTCCTGGGGATTCTTATCCGACGCAGTGCGAGCATTGTGACGTGGTGGTAAACAGTCGGTCGCAACATTGGCGGCACGTGTCTCGAGTGCATCCCGCGGCGCGGCGTCTCTACCGGCCCGTGGTCACTGCTGTTTGTCATGCTTGCGGAAAGGGCTTCCAGAACTCCACAAAGCTGGAGCTACATATGCTGCGGCACTCGCCGGCCGCGGTGCCGTGCGCGCAGTGCGGGCGCATGTTCCACGACAAGTACTCGCTGGCGCGGCACGCCGCCGCGCATGCGCCCGCGCGCCCGCACCGCTGCCACGCCTGCCCGAGCGCCTTCAAGCAGCGCGGCAACCTCGCGCGCCACTACCGGGTACAGTGCTAA
Protein Sequence: MVAYCCVKGCNNNSSNKKKNPNDITSFHAFPTNIELKQKWVRAIGRPNWMPPNYARVCSAHFSYEQINHDGRRIRIKDDAVPVKDLPVNSNFEASHVEVCRFCLAADLKLYSLQSGVHRMYMDSLAGYNENCTIEGLPQFICYECAAYLRKCYNLIEKSMIAQATLLDIFAHNGKITKNLVERENRKELNLISSLGIQDINTNRVEFKDSSEILNVDNTQNDDENSSSKTVVNFIEVPKIEVTNFTRPEEVNVIDDYNAIDANFHEDSDKSDDKSECSISEINCTENLNLDAELKPEVVKIIHEETRTSKRTGKKSNKEGLTPDEVEMQKHFTIVKLTLEQQIEGWNRTKADTVSSDETLKCQICSKIFAHHNTYQLHILRHEPSRGKAECAVCKLRFKNEVLAKSHANRTHGKKFYCKTCPKTFNNVGVAKKHHKWHSGHLYACGSCPFASAHASALGAHARAQHAGAAVCAVCGRAFVSAKGLTLHAATVHHDNTDQEESLPYRCQECDLNFKTEGARRVHMLTSKQHKTKKSFCDSTPQDPSLKNCCNKCGVEFPSLKQLVEHGRAEHGRARKKTSWSLPGDSYPTQCEHCDVVVNSRSQHWRHVSRVHPAARRLYRPVVTAVCHACGKGFQNSTKLELHMLRHSPAAVPCAQCGRMFHDKYSLARHAAAHAPARPHRCHACPSAFKQRGNLARHYRVQC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00325453;
90% Identity: iTF_00155365;
80% Identity: iTF_00155365;