Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402069.1:7904865-7920445[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.001 0.068 14.3 2.5 1 23 260 282 260 282 0.99

2 11 0.013 0.88 10.8 1.6 1 23 290 313 290 313 0.91

3 11 0.34 23 6.3 1.4 1 23 317 340 317 340 0.90

4 11 0.00025 0.017 16.2 1.9 1 23 415 437 415 437 0.99

5 11 0.001 0.067 14.3 1.7 1 23 445 468 445 468 0.98

6 11 3.9 2.6e+02 3.0 5.4 1 23 472 494 472 494 0.98

7 11 6.5e-05 0.0044 18.0 2.5 1 23 499 522 499 522 0.98

8 11 0.73 49 5.3 1.7 3 21 528 546 527 549 0.80

9 11 3.7e-06 0.00025 21.9 1.3 1 23 670 692 670 692 0.98

10 11 0.00031 0.021 15.9 1.1 1 23 698 720 698 720 0.97

11 11 2.6e-05 0.0018 19.3 2.7 1 23 726 749 726 749 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.001	0.068	14.3	2.5	1	23	260	282	260	282	0.99
2	11	0.013	0.88	10.8	1.6	1	23	290	313	290	313	0.91
3	11	0.34	23	6.3	1.4	1	23	317	340	317	340	0.90
4	11	0.00025	0.017	16.2	1.9	1	23	415	437	415	437	0.99
5	11	0.001	0.067	14.3	1.7	1	23	445	468	445	468	0.98
6	11	3.9	2.6e+02	3.0	5.4	1	23	472	494	472	494	0.98
7	11	6.5e-05	0.0044	18.0	2.5	1	23	499	522	499	522	0.98
8	11	0.73	49	5.3	1.7	3	21	528	546	527	549	0.80
9	11	3.7e-06	0.00025	21.9	1.3	1	23	670	692	670	692	0.98
10	11	0.00031	0.021	15.9	1.1	1	23	698	720	698	720	0.97
11	11	2.6e-05	0.0018	19.3	2.7	1	23	726	749	726	749	0.98

Sequence Information

Coding Sequence: ATGTTGGAGTTAAAAGCTTGTACAGCATGCTTCAGCACTAATGCCACGATGTACAATATGGACTCCGGCTCCTTACGGCATGAATTTAACTTAGTGTCCGGACTCAAGACTGCTGATTGCGTTGGGATGCCAAAATATTTGTGTTTTGAATGCTCAGCGTACGTTAAACGATTCATTAAATTTAGGAAAAAATGCCAACGAGCGCATTTTGCTTTGCAGGAAATTTTACTAAGGCATAAAGAGATTAATGTAGGAAAACTAGAGGCTATAGACCGTAAACGCTTGGACATTATGCCGGTGCTATCTTTCATAGATACAGACCACACAAAATATGAGGAAATACCGTTCCTGTGGACCAAGGCTAACCGTCTGGCTGTTTACGAAGGCGCTCACATACCGATAATCCATCACAGCACAACCTCTACCCAAGTCATAGATATGCCTAAAGAACTAAAGATAGAACTTGACGATAATGTTAATGAAAAAGAGGAAGATATGTCAGCCAAACAGCAAGATTTGGAACAGTCAATATCAATAGTAAAAGGTGATGAAGAATCTGATTATTTTGATAATGACGACAATAATCATAGTGATCATTCTGAAGAGATTGTGCCGCCTGTGAAACCCCCTTCTAATTCTAAAGTAAAGAAAAAGACTGTAAATAAGTTGGAACCGGACGGATCTAGTCTAGATGAGGAGTATGCCAGTATGGTGGTGATATCAGATCGGGAAGCGCAGGCTGCGGTTGATGTGTATCGGTTGTTCAGCCACGGGACATTTCGGTGTCAAGTCTGCAACAAGGGGTATCATACGGAGCAGAGGTTGACTGCACATTTGCGTATGCATGATCAGCATGTGAGTGGTAACTTCCTCTGCACTCTATGCAACTACTATTATAAGACGGAGTATCTACTCAAGACACACATCACCGAGAAGCACATGTATAAATATGAGTGTAAGAAGTGCAATGAAGTCTGTTTTGATCGTCTTTCAGCCAAGCAGCACTATATCTGGGCTCACCTCCAACGCGGTAAGAAGAAGAATGCCAATTGGTACGAGTCTCGCCCCAAATGGCTTAGCACTAAGGGTGGGAAGCGGGTCAAGGGAGTGGTCACCATCCGACCAGTCAGGAAGATCACAAAGCTACCAGCGGACTTCCCGGTCTATACTCCCGTAAAGCACGAGGAGCAGTACGACTTGATCTTGGAACGGAAGAAGTCCAGGAATTACATGGAGGCCGAGTACAAATGCGAGTTCTGCTATAGAGGCTTCAGGGCTGCCGCTACGTACAACAAGCATATGAGGAAGCATGATCCTGAATATTCTGGCGCGTACCAATGCGATATGTGCAAGCTGTACTTCAAGAGTCCCCGCAAGGTGTACCGGCACATGAACATAACACACCTCTTTAAATACTCCTGCCAGCTCTGCAAGTTCGTCTGCTTCAACAAGGGGCAAGCACATATGCACTATCGCTGGCACAAAAATGTTACGTACCAGTGCCCACATTGCGAGAAGGAGTTTAAGAAAGCGTCCACACGTTTGACCCACATCAGGATAAAGCATCCGTCCACGAACATCTGCAACATGTGTGGTCACAGCTTTGTGAGCGAGAACGGATTGTACTGTCACAAGCAACTGGCTCACAGCACTCAGGAGCGTGATATAATGGAGCAGTCGGTGGCGAACCCCGACGACCCCCTGTTCTGTGCGGACTGCAACGTTCAGTTCCTGAACGAGGCAGCCTTCGCGACCCACCTCGGCAGCTCTAACAAGCACGCTTCTACTAATCTGTCTATAGTGAAGCCGGTGCGGCGCGGCGCGGGCGCGTCGAGCGAGCGGCGCCGGCGCGGCCGCCCCCGCTCCAACCTGTACAACTCCGAAGTGCTCAACAACGGGACCGTGACCTCCACTAGCTGCGACCTGTGTTCGGAACATCTGTCGAACGACGTGCAAGCGCGGAAGCACTATGCAGAACAGCATCCCGGTGCGGAGTTCCTCAAGCGGTACATGTGTGACGTCTGCGGACACACCACCAAGCAATACGCGAACCTGATGGTGCACATGCGCACGCACACGCACGAGAAGCCGTACTCTTGCCCGCACTGCGAGCGCCGCTTCAGCATGCCGAGCAACCGCGACCGCCATCTTGTGGTCCACACCGGCGAGAAACGCTACCAATGCCAACACTGCAACCGTCGCTTCACACAATCCACCGCCGTCAAGCTACACATACAAACCGTCCACCTCAAAATACCATATAAACCGTGGGAGAAGAAGAACAGGAAACGGCGCAAAGAGGAGCCCATCCTTGGGCCAGTCAACTCCGTCAACGTCGGTGCCGTGGCCGCGGCAATGTTGCCGCAGCATAAAATATTACTTGAAACTCAAGGGGATTATTTGAATGCTTTTATTAGTTATAACGATGAGTGA
Protein Sequence: MLELKACTACFSTNATMYNMDSGSLRHEFNLVSGLKTADCVGMPKYLCFECSAYVKRFIKFRKKCQRAHFALQEILLRHKEINVGKLEAIDRKRLDIMPVLSFIDTDHTKYEEIPFLWTKANRLAVYEGAHIPIIHHSTTSTQVIDMPKELKIELDDNVNEKEEDMSAKQQDLEQSISIVKGDEESDYFDNDDNNHSDHSEEIVPPVKPPSNSKVKKKTVNKLEPDGSSLDEEYASMVVISDREAQAAVDVYRLFSHGTFRCQVCNKGYHTEQRLTAHLRMHDQHVSGNFLCTLCNYYYKTEYLLKTHITEKHMYKYECKKCNEVCFDRLSAKQHYIWAHLQRGKKKNANWYESRPKWLSTKGGKRVKGVVTIRPVRKITKLPADFPVYTPVKHEEQYDLILERKKSRNYMEAEYKCEFCYRGFRAAATYNKHMRKHDPEYSGAYQCDMCKLYFKSPRKVYRHMNITHLFKYSCQLCKFVCFNKGQAHMHYRWHKNVTYQCPHCEKEFKKASTRLTHIRIKHPSTNICNMCGHSFVSENGLYCHKQLAHSTQERDIMEQSVANPDDPLFCADCNVQFLNEAAFATHLGSSNKHASTNLSIVKPVRRGAGASSERRRRGRPRSNLYNSEVLNNGTVTSTSCDLCSEHLSNDVQARKHYAEQHPGAEFLKRYMCDVCGHTTKQYANLMVHMRTHTHEKPYSCPHCERRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSTAVKLHIQTVHLKIPYKPWEKKNRKRRKEEPILGPVNSVNVGAVAAAMLPQHKILLETQGDYLNAFISYNDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654718;
90% Identity: iTF_00156622;
80% Identity: -