Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402073.1:7763464-7766150[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.3 86 4.5 0.0 3 19 27 43 25 45 0.94

2 14 5.1 3.5e+02 2.6 0.4 2 21 75 94 74 97 0.87

3 14 0.059 4 8.7 2.1 2 20 121 139 120 142 0.89

4 14 0.015 1 10.6 4.1 2 21 147 166 146 169 0.94

5 14 0.2 14 7.0 0.3 1 22 173 194 173 194 0.93

6 14 4 2.7e+02 2.9 1.1 1 20 201 220 201 221 0.91

7 14 0.016 1.1 10.5 0.7 1 23 263 285 263 286 0.95

8 14 0.039 2.6 9.3 0.5 2 23 312 334 311 334 0.96

9 14 0.012 0.84 10.8 0.4 2 23 357 378 356 378 0.94

10 14 0.00017 0.012 16.7 0.0 1 23 382 405 382 405 0.97

11 14 0.033 2.3 9.5 2.1 1 23 409 432 409 432 0.97

12 14 0.22 15 6.9 0.8 1 23 437 462 437 462 0.94

13 14 0.00053 0.036 15.1 2.1 1 23 471 494 471 494 0.97

14 14 7.8e-05 0.0053 17.8 0.5 1 23 504 527 504 527 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.3	86	4.5	0.0	3	19	27	43	25	45	0.94
2	14	5.1	3.5e+02	2.6	0.4	2	21	75	94	74	97	0.87
3	14	0.059	4	8.7	2.1	2	20	121	139	120	142	0.89
4	14	0.015	1	10.6	4.1	2	21	147	166	146	169	0.94
5	14	0.2	14	7.0	0.3	1	22	173	194	173	194	0.93
6	14	4	2.7e+02	2.9	1.1	1	20	201	220	201	221	0.91
7	14	0.016	1.1	10.5	0.7	1	23	263	285	263	286	0.95
8	14	0.039	2.6	9.3	0.5	2	23	312	334	311	334	0.96
9	14	0.012	0.84	10.8	0.4	2	23	357	378	356	378	0.94
10	14	0.00017	0.012	16.7	0.0	1	23	382	405	382	405	0.97
11	14	0.033	2.3	9.5	2.1	1	23	409	432	409	432	0.97
12	14	0.22	15	6.9	0.8	1	23	437	462	437	462	0.94
13	14	0.00053	0.036	15.1	2.1	1	23	471	494	471	494	0.97
14	14	7.8e-05	0.0053	17.8	0.5	1	23	504	527	504	527	0.97

Sequence Information

Coding Sequence: ATGGCGAAACGGAACGCCGAGGTTATCTTGCAGTACTCGACTGTGTATCCGTTCAGGCTGCGCTCTAAGTCGATGTTTTGCGTTTACTGCGATGATGAGTTCGAGGATCCGGCGGAGTTCCGCACGCATGCGGCCGCGTGCCAACGCTCCTTCCCCTTCGCCAAAGCCTTCGCATACAGCCTCCGTAACCAGGAACATCTTAAAATCGAGTGCTCCGACATGAGCTGCCGCGTCTGTAGTACCCCTTACCACACCCTGGAGGAAATGGCCCAGCATGTTTTCGATAACCACGAAAACACTACCCTAAACCTAACGTATGATTTGGGCTTGCAACCTTATAAACTAGACCAAGACAAGTGGCATTGCTTCATATGCAAAAAGAAGTTTCCATCTCTTACCAAACTTGGCAGACATACGCCAACTCATTACAGAAAGTGCACTTGTGAGATCTGTGGACGAACGTATCTGACGAAAGAAGCCTTGAAGTACCACATGAGGTGTAGCCATTCTGATAATCACGCTTGTCGTAAGTGCTGGCAAGAGTTTCCTTCCTTAGAAGAAAAGAAGGAACATATCAGGTCCACGAAACCTTGCTGGCCTTTCTGCTGTGTATATTGCGGGGATAGGTTTCTATCTTGGGAGAACAAGCAGAAACATCTTGTCGAGGTCAAGTGTTGCAGGACGGCGTACAAAGCTCGTAACGGTAGGGTTATGCGTTCTCGGCGCAATGCAGAACTGATACTGCAGTGGTCTACCGCTTGTCCCTTCAGAACATGGAAGAGTAATTTCAGCTGTGTATTCTGCCGCGTACAAACGAGTGATCCAAGTGGCCTTAGGACTCACGTGGCTACTCATCACGCCGACTATCACGTTCAAGATGCTTTTTACAGAAAACTAGGGAAGGAATTCCTTAAAATTGATATAACTAATCTACATTGTAAACTCTGCTTTATGCCTGTAGAATCATTAGACGCTCTGACAAACCATTTAAAAACTGACCATCAACAACCTATAAATGACGAACAGCTTGGTGTTATACCGTTCCGGCTGAACGACGGATCTATTTGGAAATGCACTATTTGTCCGAATCAATTCCAAGACTTTGTATCGCTGAAGAAACATACGGCTGAGCATTTGCAAAACTATGTGTGCGATACGTGTGGAGAGGGGTTCATTACGGAATCTGCTATGATCGCTCACACCAAGATACCGCACGAAAACAAATATAACTGTAGCCGATGCGTGGCTACTTTCTCGTCACTAGACGAGAGAAATCACCACGTAAAAACTCAGCATACAAACACACCTTATATGTGCAACTATTGTAAAGATAAGCCCCGCTTCTCTAATTGGGAACTTCGCAAGAAACACTTAATGGAAGTCCACAACTATACTTCTGGCGCAGATAAATACGAGTGCGTTACTTGCCAGAAAACTTTTAAAACTCGCTCCGGGAAGTATAATCACATGGCCAGAACGCATAGAGTGAAAAAAGACAGCGAACTTAATTACCCTTGCCCAAGTTGCCCTAAAGCGTTCACTACTAAATTGTTTCTGGATAAACACATGGCTAAAAAACATTTCAATTTGTAG
Protein Sequence: MAKRNAEVILQYSTVYPFRLRSKSMFCVYCDDEFEDPAEFRTHAAACQRSFPFAKAFAYSLRNQEHLKIECSDMSCRVCSTPYHTLEEMAQHVFDNHENTTLNLTYDLGLQPYKLDQDKWHCFICKKKFPSLTKLGRHTPTHYRKCTCEICGRTYLTKEALKYHMRCSHSDNHACRKCWQEFPSLEEKKEHIRSTKPCWPFCCVYCGDRFLSWENKQKHLVEVKCCRTAYKARNGRVMRSRRNAELILQWSTACPFRTWKSNFSCVFCRVQTSDPSGLRTHVATHHADYHVQDAFYRKLGKEFLKIDITNLHCKLCFMPVESLDALTNHLKTDHQQPINDEQLGVIPFRLNDGSIWKCTICPNQFQDFVSLKKHTAEHLQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCVATFSSLDERNHHVKTQHTNTPYMCNYCKDKPRFSNWELRKKHLMEVHNYTSGADKYECVTCQKTFKTRSGKYNHMARTHRVKKDSELNYPCPSCPKAFTTKLFLDKHMAKKHFNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -