Acra005388.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- Znf784
- Assembly
- GCA_947859365.1
- Location
- OX402074.1:9794938-9810883[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00022 0.015 16.3 1.8 1 23 430 452 430 452 0.98 2 12 0.11 7.6 7.8 6.9 1 23 459 481 459 481 0.96 3 12 0.28 19 6.6 1.5 1 23 485 507 485 507 0.97 4 12 0.23 15 6.8 0.4 1 13 512 524 512 527 0.86 5 12 0.49 33 5.8 0.1 2 23 567 589 567 589 0.94 6 12 0.0072 0.48 11.6 0.0 1 20 597 616 597 618 0.94 7 12 0.0065 0.44 11.7 0.1 3 23 629 650 628 650 0.90 8 12 0.00043 0.029 15.4 0.6 3 23 657 678 655 678 0.97 9 12 0.035 2.3 9.4 0.0 2 21 711 730 710 731 0.94 10 12 0.0035 0.24 12.6 1.3 1 23 742 764 742 764 0.97 11 12 2.6e-05 0.0018 19.3 1.9 1 23 770 793 770 793 0.98 12 12 1.2e-05 0.00079 20.4 0.4 2 23 801 823 800 823 0.97
Sequence Information
- Coding Sequence
- ATGCTCAAGGCAACGCGAGTCGTGTTTGTGTCAGAAGATTTGAGTGTTTGTAGAATTTGTTTAGCAACAAATATTAAACTTTATAGCATTCCTGATGGCTTAGAAGACAATTTTACGGAACTGATGGGTGTTGAATTCTCGGACGACGATGGTCTGCCGCAGTACCTGTGCCCGCAGTGCCGGATGCTGCTGCTGCGGGCGGCGGCGCTGCGGGCGCGCTGCCGACGCTCGGAGCGGCTGCTCCGGCAGGCTTTGAGGACACAGCCTTTTCTGTCAACAGATGACATATTACAGATTGACAGAAAATTTCACAGACTAGCTCTCAACCTTACACAACTTAGTGTATACAATTTCGATTCACACAAAAAGAAAGAAACAATAGACATAAAGGATACACAAAACGAAGAAGATAGTTTTGATGATATAGAAGACTTGCCTGATATGAACGGAGAAGTCATAGATCCGCTAACAGAAGATATAGCTAGTGAAGTTATTATAGAACCAAAAGCAGCAGAAGTTGAAAAAGATAATCGAAAAGCGCTAGTCGATAATTTAGAACCGGATAAACTTGATGGCAAACCGAATTTGTTATTTGAAATAGACGGTTTGAACATGGGCAGGATTAAAGTCAAACCAGTTGATGCTAAAGAAAAAAACCTTACACAACTTAGTGTATACAATTTCGATTCACACAAAAAGAAAGAAACAATAGACATAAAGGATACACAAAACGAAGAAGATAGTTTTGATGATATGGAAGAATTGTCTGATATAAACGGAGAAGTCATAGATCCGCTAACAGAAGATATAGCTAGTGAAGTTATTATAGAACCAAAAGCAGCAGAAGTTGAAAAAGATAATCGAAAAGCGCTAGTCGATAATTTAGAACCGGATAAACTTGATGGCAAACCGAATTTGTTATTTGAAATAGACGGTTTGAACATGGGCAGGATTAAAGTCAAGTCCGTTGATGCTAAAAAAGAAAAGATAAAAAAGATGAGAATGGAATTCAAGAGGCAGAAAGCGGAGAAGGAATCAAAGAAGTTAGAAGTGAAAGCGAAGCGGATATCGAATTTGCTGCGGTTTGTAACGGGGAAGAAGCGGAATGCGGAACCTTTGACTAAATGGCAGATGCAATTGAGAAGGGCGGAGAATAATTTCTTGCCCAATTTCGATCATGCGGAGTTTGAGAAAGAACATGATTGCAAATTGAAGATACTGACGATGGAGGAGCAGTTGGAAGAGATAGCGGAGAGGAAGCAGAGCAGTAATTATTTGAATCTCGATTTCAAGTGCGAGTTCTGCGGGCGAGGGTTCGAGTTTGAGAGGTCCTTTAAGAACCATATGGCGAAACATGATCCGGCTATCGGCAAGTTCGAGTGCGAGGTGTGCCACATCCACTTCCGCACGCAGTACCTGCGCCACCGGCACCTCGACTACCACAAGATGAAGTTCGTCTGCAACATATGCTCCTTCGTCACCCGAGCCAAGCACTTGGCTCGTAACCACTACCTGATGCACACCGGCAAAGTGTTCAAATGCAAACAGTGCGATGCTACTTTCACACCATCTGAATCGTGGTTATTTTGCTTTATAGACGAGTCGGTACTGAGCGCGTCTGACTATGGGTATATTTGTGACAGCAAGAGCACTTCCTACTTCGGGCACGTGCGGCTGAACCACCCGTCGCGGGACGCGGTGTGCGAGCTGTGCGGGGACTCCTTCATCGGAGCCCTGGGACTGCGCCATCACAGGGCTAAGGCACATAGAGAGTTATCAAAAGCCAAGTACGAGTGCGGCTCGTGCGGAGTGCGGTTCGCGAGCTCGGACGCCATGAAGAAACACGCAAACGGACGGAGCAAATGCGACAACAGCATGAAGGCGTGTGCTGAGTGCGGTGAAGTCTTCAGTTCTGGAGAGCTCCTGAAGCAGCATACGGATGAACGGCATCTGCTGGTCCAGTACTGGTGCGAGGAGTGCTCGCAGTCGTTCGTGAGCCAGGCCTCGCTGGAGACCCATCATCAGAGAGTGCATCTCCACATCAAGTGGCCCGCGTACGGGCGGACCCGGGAGATGAACAGAGAGTACTACAAGAAGATCAAAGAGAGGACGAGACTGAAGGCGCTTGTGGTGTGCGAGATATGCGGCGCCAAGCTTATGTCTAACGCAGCGCTGGAGAGGCACCAGCAGAGTCAGTGCCGGCGGGAGCGAAGCGCGAAGGCCTACAAGTGTCCTTACTGCATCAAGAGTTGCGCCACGCGGCAAGGGCTGCAGTTGCACATAACCCTCCACACGGGCGAGAAGCCCTACAAATGCTCGCAGTGCCCGCTGGAGTTCAGGCAGTCCGGGGCGCTCAAACGGCACCACAACAAGGTCCATCTGGGCATAGACACGAGGGTCCAATGCGAGTACTGCGGCAAGTACTTCTCGACACCTTCCACCAGGAAGCTCCACATCAACACCGTCCATTTGAAGATGCCGCAGCCGCCGCGGACGCGACGCAGTAAGGGGGACGACTGA
- Protein Sequence
- MLKATRVVFVSEDLSVCRICLATNIKLYSIPDGLEDNFTELMGVEFSDDDGLPQYLCPQCRMLLLRAAALRARCRRSERLLRQALRTQPFLSTDDILQIDRKFHRLALNLTQLSVYNFDSHKKKETIDIKDTQNEEDSFDDIEDLPDMNGEVIDPLTEDIASEVIIEPKAAEVEKDNRKALVDNLEPDKLDGKPNLLFEIDGLNMGRIKVKPVDAKEKNLTQLSVYNFDSHKKKETIDIKDTQNEEDSFDDMEELSDINGEVIDPLTEDIASEVIIEPKAAEVEKDNRKALVDNLEPDKLDGKPNLLFEIDGLNMGRIKVKSVDAKKEKIKKMRMEFKRQKAEKESKKLEVKAKRISNLLRFVTGKKRNAEPLTKWQMQLRRAENNFLPNFDHAEFEKEHDCKLKILTMEEQLEEIAERKQSSNYLNLDFKCEFCGRGFEFERSFKNHMAKHDPAIGKFECEVCHIHFRTQYLRHRHLDYHKMKFVCNICSFVTRAKHLARNHYLMHTGKVFKCKQCDATFTPSESWLFCFIDESVLSASDYGYICDSKSTSYFGHVRLNHPSRDAVCELCGDSFIGALGLRHHRAKAHRELSKAKYECGSCGVRFASSDAMKKHANGRSKCDNSMKACAECGEVFSSGELLKQHTDERHLLVQYWCEECSQSFVSQASLETHHQRVHLHIKWPAYGRTREMNREYYKKIKERTRLKALVVCEICGAKLMSNAALERHQQSQCRRERSAKAYKCPYCIKSCATRQGLQLHITLHTGEKPYKCSQCPLEFRQSGALKRHHNKVHLGIDTRVQCEYCGKYFSTPSTRKLHINTVHLKMPQPPRTRRSKGDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156540;
- 90% Identity
- -
- 80% Identity
- -