Acra005377.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- ZNF595
- Assembly
- GCA_947859365.1
- Location
- OX402074.1:9625177-9649955[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.73 49 5.3 0.8 2 23 327 348 326 348 0.95 2 12 1.3 87 4.5 3.5 2 23 356 378 356 378 0.92 3 12 4.9 3.3e+02 2.7 0.2 1 21 382 402 382 404 0.74 4 12 0.00014 0.0094 17.0 3.0 2 23 410 432 409 432 0.96 5 12 0.0041 0.28 12.3 0.2 2 23 441 463 441 463 0.91 6 12 0.036 2.4 9.4 0.1 2 19 486 503 485 505 0.94 7 12 0.025 1.7 9.9 4.5 3 23 517 538 516 538 0.96 8 12 2.6e-05 0.0018 19.3 1.0 1 23 543 566 543 566 0.97 9 12 0.0052 0.35 12.0 2.2 1 23 592 614 592 614 0.98 10 12 9.8e-06 0.00066 20.6 1.1 1 23 620 643 620 643 0.95 11 12 0.00043 0.029 15.4 0.9 1 23 649 671 649 671 0.98 12 12 3.6e-06 0.00024 22.0 0.5 1 23 677 700 677 700 0.96
Sequence Information
- Coding Sequence
- ATGACTACAATAAAGCAAGAAATAGATGTCGAAGAGCTGCTAGCATGCCGTATATGTCTTGCGACCGACGTAAAATTAAATGGTATACATGAACATCATTTAGATGAAGCTTTTTCAGACCTCATGGGGACTCCGGTGTTGGTGGGCGACGGGCTCCCGCAGCACCTGTGCGAGGCATGCCAGACGGCGCTGCAACAGGGGCGGGCGCTGCGCGCGCGTTGCCGACGCTCCCTCGACCTGCTCACGAAGAGTCTCGCGCAGCAGCATTACATCACAACAGACACGATTCGCGCGCTAGACCGCTCAGCTCTCACTCAAGAAAAAGACATCCCAGACATCGGTGACGCCGGAGACATATACCCCAAAACCCTGGACTACCTCGATTCCAACGACAGCTCGCAGCTCCTATCGACCTTCTGCCAACCCGACAGCGATGTCGAAATGACAGATGTCAAGGATCCAAACTATATAGACATACCGGTCGTTGAGATGGATGATTTAGACGATATTGATGTGAAACTGTCGGAGCTGAAAGCCAAGTTGGAAGGCAAAATCAAGAAGGAAAAGGGGACGAGAAGGAAAAGAGTGAAGAAGGAGAAGGTGAGGAAGAGGAGAAAAGTGGTGGAGGAAGTCAAAGAAGTTAAGGAGGAGAAGCCATCCGTGGAGTGGGTCGCGAAAAAGAAGACGCCGTACAAAAGAAAGAAGAAAGGATTCAAGAGGTACTTCATGTGCGAGGAAGACTATGCCAAGTTCGAAGAGAGGTATAACATTGAGCCGTGCTGTGATTGTGTTGAGCTCGTAGCTCCTAAACCTTGGACATTAAAAAATCTGAAGAAGCCCTACGCCGTGCTGCTTGCTGAAGTGACTCATTTGCTGGACTGGTGCTGGAACCTGAAGGTGGTCAGATTATCAGAAGAGGAGCAACAGAGAGAGATGGAGGCGCGCAAAGAGTCGGAGAACTATTTGCACGCCCTCGTGCGCTGCGAGAAGTGCTTCAAAGGGTTCCTGTCCATGTTCACGTACGAGAACCACGTCAAGGTCCACGACCCGGCGCTGGGCCCCAACGAGTGTCCGCTGTGCCAGTGCCGCTTCAAGTGGCCCAACAAGCTGCGCACGCACCTCATCGAGTGCCACCAGCTCAAGTACGTCTGCAAGGAGTGCAAGCTCGTCATCCGGGGCAGATATATGGCTGTGATGCACGCCCAGTTCCACGCCGGCAAGACTTGGGAGTGCAAGCACTGTCCGCTCACCTTCAAAAAGCAGTCAACGTTCTACACGCACCTCCGCATCAACCACTCGACGGAGAACGCGCTCGGGGGCACCTGTGACATCTGCGGGGAAACCTTCACCGGCGCCATGGGGCTGCGCATGCACAAGACACAGACGCACAACAAGGTGACTCAGACGCGCCATACGATCACTCAGACACACTACAAGAAAGAAATAAAGGCGTTGAAATGTCTGATATGCAAGATACAGTTCGAGAACAAGGACGCGCTGGACCGACACTTCCTGCCCAACAACGATTGCGATCCCAAACTCAGgttttGCGAGAGTTGCGGGTGCTCGTTCTGCGACGAGGACCAGCTCAGTCTGCACCGGCAGCGCCAGCACGGCGTCGAGGTCTACAAGTGCGATGACTGCAACAAATCCTTCCTATCAAAGTCTTCGCTTTCTACACACATCGACCGCGTCCACCTCAACATCAAGCCTCGGTTTAGGTTCTACAACTACAAGAAGACGAACAGACAGCGCTCCGGAGCACGGCTGGACTACATGTGCGAAACCTGCGGGAAGGCTTACACGTGCTTCGCTTTGCTGAAAACACATCAGATGAGTCACACGGGGGAGCGCCCCTTTAAGTGCACCCAGTGCCCTAAGAGCTTCATCACAGCCTCGCAGCTCAAGGGGCACCGCGACAGCTTCCACGCGCGCATGCGCAAGTACCGCTGCCCGCTGTGCCCCAAGACCTTCCTGCGGCAGTCCTCCATCTACAAACACCGCCTCATCCACACGGGCGAGAAGCCCTACGAGTGCTCCATCTGCAGCAAGGCCTTCACGCAGTCCGGCTCGCTGACCACCCACGTCAAGTACGTCCACATGAAGCTGAAGCCGCCGCCGCGCCGCCGCCGGAAGCCCGAAGATCACTATTAG
- Protein Sequence
- MTTIKQEIDVEELLACRICLATDVKLNGIHEHHLDEAFSDLMGTPVLVGDGLPQHLCEACQTALQQGRALRARCRRSLDLLTKSLAQQHYITTDTIRALDRSALTQEKDIPDIGDAGDIYPKTLDYLDSNDSSQLLSTFCQPDSDVEMTDVKDPNYIDIPVVEMDDLDDIDVKLSELKAKLEGKIKKEKGTRRKRVKKEKVRKRRKVVEEVKEVKEEKPSVEWVAKKKTPYKRKKKGFKRYFMCEEDYAKFEERYNIEPCCDCVELVAPKPWTLKNLKKPYAVLLAEVTHLLDWCWNLKVVRLSEEEQQREMEARKESENYLHALVRCEKCFKGFLSMFTYENHVKVHDPALGPNECPLCQCRFKWPNKLRTHLIECHQLKYVCKECKLVIRGRYMAVMHAQFHAGKTWECKHCPLTFKKQSTFYTHLRINHSTENALGGTCDICGETFTGAMGLRMHKTQTHNKVTQTRHTITQTHYKKEIKALKCLICKIQFENKDALDRHFLPNNDCDPKLRFCESCGCSFCDEDQLSLHRQRQHGVEVYKCDDCNKSFLSKSSLSTHIDRVHLNIKPRFRFYNYKKTNRQRSGARLDYMCETCGKAYTCFALLKTHQMSHTGERPFKCTQCPKSFITASQLKGHRDSFHARMRKYRCPLCPKTFLRQSSIYKHRLIHTGEKPYECSICSKAFTQSGSLTTHVKYVHMKLKPPPRRRRKPEDHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01135132;
- 90% Identity
- -
- 80% Identity
- -