Acra011249.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402058.1:15377716-15389149[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.3e-07 2.2e-05 25.2 1.0 1 23 1062 1084 1062 1084 0.97 2 11 0.067 4.5 8.5 7.2 1 23 1090 1113 1090 1113 0.97 3 11 0.14 9.7 7.5 0.3 1 23 1121 1143 1121 1143 0.95 4 11 0.012 0.81 10.9 4.7 1 23 1150 1172 1150 1172 0.97 5 11 0.0031 0.21 12.7 2.3 1 23 1178 1200 1178 1200 0.99 6 11 0.0017 0.11 13.6 1.8 2 23 1207 1229 1206 1229 0.95 7 11 0.022 1.5 10.1 2.2 2 23 1235 1254 1234 1254 0.97 8 11 1.4e-05 0.00091 20.2 2.8 1 23 1260 1282 1260 1282 0.98 9 11 2.8e-05 0.0019 19.1 1.4 1 23 1288 1310 1288 1310 0.98 10 11 0.00022 0.015 16.3 4.1 1 23 1316 1339 1316 1339 0.98 11 11 0.0016 0.11 13.6 0.3 1 19 1345 1363 1345 1366 0.95
Sequence Information
- Coding Sequence
- ATGCCGCCGCCTGGTGATGATAATATTGAGGTTATACCGGCTGCGAGTGCTGCGTCAAATACTTCGACGATAATGTTGGGTGGCGTAGGCGCAATGGAGAAGCTGGAGGGTGCCGGGAATTTTCATAATTGGAAATTTGCATTAAAAATGATGCTCACATTGGAAGGATTATGGGACCTCATCGTGAGAACAGGAGATGAGCCGCTAACTGGCTCGGATGTCGCGCGCGATCAACGTGCGCTGGCTCGCCTGTGTTTGAGCTTGAAACCAGGGCTTTACCAATATGTTCGTGAGGCTAAGTCAGCAAAAGAAGCTTGGAAGAAGCTTTCTGACGTCTTTGAGGATCGTGGCCTTTATAGGCGCGTGCTTCTACTGAGACAACTGCATCATATTGAGTTTTCTGATTACAGTTCAATGTCTACTTATATTGAGAAAGTTATGTCTCTTGTACACCAGTTGTCGGATATAGGCAAGACTGTTGAAGACGAAGAAATTGCAGAGATACTGTTGAGTGGTTTGCCACAAGAATATGACCCACTAGTAAGTAACCTGGAGACCCTATGTTTGTCGTCTAAGCTTTCGAGTGAGCTAGTGAGGACTAGGTTGTTACAAGAAGCGCAGAGGAAGGATGACTCCATCAGTGCGTCCTCGTCTTCTACTACTACAGCGTTTGTAAGCAAGAAACAGATCACATGCAAATATTGCGGTAAGCTAGGCCATGTGAAGGCTAAATGTTTTAAGCTGCGACGTGAGAGGATGGTGAAGAAGAAGGACAACAAGGATCAACATACCACTGCCTACCTAGCCCATGCTGCTACTGCTGAATTGTACTTGGACTCGGGTTCTTCGAACCATTTAGTGAAAGACAGGGACTTACTGTGCAATATTAGGGACACTAGTGTGCAGACTATATCTACTGCAAACAGACAACAGATGACTAGTATGAGTGCAGGCGAGCTGCACCTCAATATGAACAATCAGGTTAGAAACATTAAAAATGTTATGTTTGTCCCCGGTTTGACTGTAAATCTCTTGAGTGTCTCTAAATTGTGTCAAAATGGTTTTGTTATTAAATTTAATGCTGATGGTGGTTTCATATATGATGAAAATAGTAAAAGTTCTGGCAACTATTTAGCAAAAGCAATCTGTACTAATGGCATTTATAAATTGGAAAGTTTTGTGTGTAAAGGTAACTTGCCCAATAGGATGCACTCTTTGTTCCTGCAAGATAGGCAGGAAGCACCGAGTGCAGCAGTCGCTACCTCTGAGACAGCAAATTTGTTTCATTGCCGTCTTGGTCACTTGAGCATTGCAGGTATGACTAAGTTAAGAAAGCATGTGTGTGGTGTCGTTTTTCAGGGTGAGGCTTACGACAAGTGTGAAGCTTGCCTTAAGGGGAAGATGGCTACCAAGCCATTTCCTAAAGCCAGCTCAAGCAGGACTACCCAACCGCTTCAGCTCATACATAGCGACGTTTGTGGACCATTACCAGAGGCAAGCTGGGGTGGGGCGCGTTACCTGGTCACATTCATTGATGACTTCACAAGGAAAACTTATGGCTACCTCATGAAAAACAAATCACAGCATGCGTCCTTGGGAAAGCGTTTTTGGGGAGAGGCCATCATGGCAGCCATATATTTAAAAAATAGGTCTCCCACAACTGCTTTGTCCGGACGTATTCCTGAAGAGGTCTGGTCCGGGTCTAAGGTAGACCTCAGCCATCTCAGGGTGTTTGGCTGCATGGCTTATTCGCTTGTTCCCAGAAGTAAAAGGGATAAGCTAGACGCTAAGGGGAAGGAATATATATTTGTAGGTTATAGTGAGACTTCGAAGGGATATCGACTAGCTGATCCCTTATGTCCTACTAAGGTGATTATCTCTCGAAATGTAGCATTTATTGAGAACAAGTTCAGAGTTTCCTATCCTCAACCATCAGATGCTGACAGTGAAGAGCATATAAATATTTTTAACTTTGACTGTGATATAACAAAACAGAACTGTGATAAAAATATTAATGAATCCAATTTTAATAATAATGAATTAATGAATAATGATGATGGGTTATGTGTAAGTGAAAATGATAATAAATTTAATGATTTTAACAGAGATAATATTTCAATTTCAGAAGGAGTTACTGGGAGTGAGGACGAGTCCGAACCCGCTGGTTTGTCTGCAAGTGAAGACGAGCTCGACCCTGCTGGGTTGCCTGCAAGGGAGCCAAGCTCCGAGTCGCTGAATTCGTCGTGCGAGACTACAGCTAGGGATGGTGCCGCGACTGGTCCTACGACTGTCGCTTCGCACGCTGGTCGTCCAATCCGCTCTACACGTAATGTACAACCTCTGAGATTTTCCGACTATGATATGACTGATATCAGTTTAATGGTTTTTGAAAATCCTTTTATCTCTGAACCACTCACATACAACGAGGCGGTGAATTCAGCTCATAGTAAGgagtggctggaggccatgacgcgtgaACCAGACATGGCTAAAACTAGAGAAAAACCTAAAAAAAAAGATAAAGATGATAAGTTATCAACAGGTAAGAAAAAGAAACAAATGTCTCTGCAAGAACTTAAGTTTCTATCGCCGGACGAAAAAATGCAATACCTACTAGAAAACGGTCACATGGTAAAAGATATGTTGTTTAACAAAGTGGCTATGAAGAGGGGGATCATTCAGAAAGACGCCTTGGTCATTGGACCAGAAACATTCATGTCTAAAAGCGGCAAACTTAAAAAAAGGAAAACACATCATTTGCAATTCTTGGACCACATTTTAATGGACGAGCTTAAAATTGATATGAACAACAAGCACAATAAACACAGCAAAAACAAAACAAATGGGGATAATAACAATGATATGGATATTAGCAACCAAAATAACACTGTAAATAGTTCAAAAGGTAAAACAAAAGAAACTGAAAAAAGTAAAGGTAAATCTAGTGACAGTAATTTAACTGAACTGACTGGAGAGCTTTCCGAGAATATAATTACTAACACAAATCCTATAATTGCAAATCCTATTAGTTTGAAAGAAATCCACGAGGTACCGAAAACAAACAAAGACAAAACCAAAAAGAAAATCAAGAAACTGGATAAAGAGACACAAGAATTGCTCACTAAACGACTCCAGAAGCTTAGGACGGTCCAACTCAGTACTGGAAATGTTTACCTCGGTCGTTTTGACTGTGACTACTGTGGGAAATCATTCAATGCTAAATCATCTCTACGGAGACACATAAATATGCACCTTGATGTGAAACCATTTAAGTGCCGCTACTGCAACATGAAGTTTGGGCAGTGTTGCAACTGGCGCTCTCACATGAAGAATGTCCATCCAAAGCTGAAGATGGAGAAATACATTTGCCGCAAATGCCGCAAACCTTTCTTGCTCAAAGAAAATCTGACCCTGCATTTAGCTGCACACGTAAAAAAGGAGAACTCGCACAAATGCGTGTTCTGCGATAAAGTTTTCTCCAGCCACATGCTGCTGTCTCAGCACGAGAAGCAGCACATGACCCCAGGCAAATACAAATGCTCAATCTGCACCATGAGCTATGAATCCCGCAGTCGCTTCTCCCTTCACATAAAAAGACATTTGGAGGTCAAGGATTTGAGTTGCCAGTACTGCGGCAAACAGTTTCTGAGGCCCAGCTCTATAAAGAGGCACATTCAGATATGCCACGGTGGTATAAGAGTGCAGTGTCCGGTTTGTAAGAAGAAGTTGAAAGGGCATTTGACTGAGCATATGAGGACTCATGAGAATGAACGACCGCATGAATGCCAGGAGTGTGGGCAGAGGTTTACTCAGTCTACGCAATTGAATGTCCACAAAAGGTCTCATACTGGGGCTAGGCCTTACCCCTGCAGGATTTGTAAGCGCCCGTTCACACACTCCAACGCCCTTATGCTCCACATAAGGCGCCATACGGGCGAGAAGCCATTCCAATGCGCTATGTGCCATATGTCCTTCTCCCAGCTGCCGCATATGAAAAGTCACATGCGTAAAATTCATGGCAAAGAAAAGTATTACAAATGCGAACAGTGTAACAAATTCTTCAGACTCAAAGCAGAGTTGGAAATGCATGAAATCAACTGTGTAACTAAAGACAAGGACTTGACTTTTGATGAACAAGTACAAGCTTCCATGGAGTCCGGGGAAACACAAATGAACATTTCGAAAATGCGGTTCCTGCTAGCTCTGCTTTTTACCAAGATCGCGTCCAAAGAGAAATTGAAATATTTAGGTTTCAACAAACGTCTCATAGACGATATTCTGGTGGAGTCAGTCGAAGCAATGGGGCACACACCATGCACGGACAAATTCCAATCTCCCTTCATGCGTCTTAAGACCAACATCTCAATATTAATGCAAGGGACTGTGCCTAAAGATGACTTGATCAAGTTCAGGGAATCAAAGAAAACCACCGAAGAATTACTGGAGTTGCTGACAGATGATAAGAAATAG
- Protein Sequence
- MPPPGDDNIEVIPAASAASNTSTIMLGGVGAMEKLEGAGNFHNWKFALKMMLTLEGLWDLIVRTGDEPLTGSDVARDQRALARLCLSLKPGLYQYVREAKSAKEAWKKLSDVFEDRGLYRRVLLLRQLHHIEFSDYSSMSTYIEKVMSLVHQLSDIGKTVEDEEIAEILLSGLPQEYDPLVSNLETLCLSSKLSSELVRTRLLQEAQRKDDSISASSSSTTTAFVSKKQITCKYCGKLGHVKAKCFKLRRERMVKKKDNKDQHTTAYLAHAATAELYLDSGSSNHLVKDRDLLCNIRDTSVQTISTANRQQMTSMSAGELHLNMNNQVRNIKNVMFVPGLTVNLLSVSKLCQNGFVIKFNADGGFIYDENSKSSGNYLAKAICTNGIYKLESFVCKGNLPNRMHSLFLQDRQEAPSAAVATSETANLFHCRLGHLSIAGMTKLRKHVCGVVFQGEAYDKCEACLKGKMATKPFPKASSSRTTQPLQLIHSDVCGPLPEASWGGARYLVTFIDDFTRKTYGYLMKNKSQHASLGKRFWGEAIMAAIYLKNRSPTTALSGRIPEEVWSGSKVDLSHLRVFGCMAYSLVPRSKRDKLDAKGKEYIFVGYSETSKGYRLADPLCPTKVIISRNVAFIENKFRVSYPQPSDADSEEHINIFNFDCDITKQNCDKNINESNFNNNELMNNDDGLCVSENDNKFNDFNRDNISISEGVTGSEDESEPAGLSASEDELDPAGLPAREPSSESLNSSCETTARDGAATGPTTVASHAGRPIRSTRNVQPLRFSDYDMTDISLMVFENPFISEPLTYNEAVNSAHSKEWLEAMTREPDMAKTREKPKKKDKDDKLSTGKKKKQMSLQELKFLSPDEKMQYLLENGHMVKDMLFNKVAMKRGIIQKDALVIGPETFMSKSGKLKKRKTHHLQFLDHILMDELKIDMNNKHNKHSKNKTNGDNNNDMDISNQNNTVNSSKGKTKETEKSKGKSSDSNLTELTGELSENIITNTNPIIANPISLKEIHEVPKTNKDKTKKKIKKLDKETQELLTKRLQKLRTVQLSTGNVYLGRFDCDYCGKSFNAKSSLRRHINMHLDVKPFKCRYCNMKFGQCCNWRSHMKNVHPKLKMEKYICRKCRKPFLLKENLTLHLAAHVKKENSHKCVFCDKVFSSHMLLSQHEKQHMTPGKYKCSICTMSYESRSRFSLHIKRHLEVKDLSCQYCGKQFLRPSSIKRHIQICHGGIRVQCPVCKKKLKGHLTEHMRTHENERPHECQECGQRFTQSTQLNVHKRSHTGARPYPCRICKRPFTHSNALMLHIRRHTGEKPFQCAMCHMSFSQLPHMKSHMRKIHGKEKYYKCEQCNKFFRLKAELEMHEINCVTKDKDLTFDEQVQASMESGETQMNISKMRFLLALLFTKIASKEKLKYLGFNKRLIDDILVESVEAMGHTPCTDKFQSPFMRLKTNISILMQGTVPKDDLIKFRESKKTTEELLELLTDDKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -