Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402074.1:10167146-10186840[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00035 0.024 15.7 1.4 1 23 382 404 382 404 0.96

2 11 0.048 3.3 9.0 3.2 2 20 411 429 411 432 0.94

3 11 0.46 31 5.9 4.0 1 23 436 458 436 458 0.91

4 11 0.0017 0.11 13.6 4.2 1 23 463 486 463 486 0.98

5 11 1.5 1e+02 4.3 0.0 3 11 493 501 492 514 0.78

6 11 0.0016 0.11 13.6 0.0 2 19 525 542 524 545 0.94

7 11 0.0004 0.027 15.5 0.8 2 23 584 606 584 606 0.94

8 11 0.00012 0.0078 17.2 0.1 2 23 629 650 628 650 0.96

9 11 1.7e-05 0.0011 19.9 6.1 1 23 656 678 656 678 0.99

10 11 1.1e-06 7.3e-05 23.6 0.8 1 23 684 707 684 707 0.97

11 11 0.033 2.2 9.5 0.0 2 23 713 734 712 734 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00035	0.024	15.7	1.4	1	23	382	404	382	404	0.96
2	11	0.048	3.3	9.0	3.2	2	20	411	429	411	432	0.94
3	11	0.46	31	5.9	4.0	1	23	436	458	436	458	0.91
4	11	0.0017	0.11	13.6	4.2	1	23	463	486	463	486	0.98
5	11	1.5	1e+02	4.3	0.0	3	11	493	501	492	514	0.78
6	11	0.0016	0.11	13.6	0.0	2	19	525	542	524	545	0.94
7	11	0.0004	0.027	15.5	0.8	2	23	584	606	584	606	0.94
8	11	0.00012	0.0078	17.2	0.1	2	23	629	650	628	650	0.96
9	11	1.7e-05	0.0011	19.9	6.1	1	23	656	678	656	678	0.99
10	11	1.1e-06	7.3e-05	23.6	0.8	1	23	684	707	684	707	0.97
11	11	0.033	2.2	9.5	0.0	2	23	713	734	712	734	0.95

Sequence Information

Coding Sequence: ATGTACTATTACTGTGCTGTCGGCAGTGTCCCGAGCTCCCTGATCCTGCGCGCGCAGCGGGTGCTGGCTCTCGGCCCTCTTCCCGACCACTGTTACGTCTGCAGCCGCCATTTTGACGACACCATGTTCACAAATAGTGGGAAACTTGTCCGGCATGCTGTTCCGAAGCGGTTCTTGGATACGCCACTGAATGAGGATCTAAGTATAAATATGAGGGAGTGTTCCGACGAAGCAGAAGAGAGAGGCGGGGGATTAAGCGACGAGCTGGTCGCTTGCCGCGCGTGCCTTGCGGCGGACGGGCGGCTGTACGCCATAAGCGGCAGCGGGTTGGAAGACGCGCTCGCAGCACTCACTGGAATAGCGAAGCCAGAGTCGCAGGGTTTGCCGCGTCACCTGTGCGCGTTCTGCGTCGCGAAGCTGTCAAAGTGCGCCGCCTTCCGTGACAGCTGTCAGCGGAGCGCAACGCTGCTGCAGACTCTACTAGACAAGGGCCCGTTAAAAATGAACGACGTTAAGGCTATCAACAGAAATTCACACAAACTGACAAACAATCTAACACGGAACAAAGTGTTCGAATTCGGAACTGACCCACTATTAACAGTACTGCCACAAATAAAAACTGAAGACGATGAAAATACACGCGAAGTGACCGCTTTCGTAGAAGTAGAATGTATAAGAAGGAAAGATTCCATAAAAAACGATTTCGCTCCGCAAACCTTCGATGTACCAATAGAAAAGCAAGAAGTGAAAGAAGTTAAGTTAGTGAAATTAAAAACAGAGAATGCTAACGCTCACTCAGACGCTGATTACATGGAATCTGAAGTGAAGAATGATACCAGCGACGACGATACCGACACGTCAGAGGAAACGCTAGCAGCTGTTAAGAGAGGCAAAAGGAAAAGGGTAAAAGCGGAAAAAGAGAACACTAAATATTCAAAGAAATGTAAAAACGTCAAAGCTAAAGCTGATGATTGCCCCAAAGATGAAGAGGCACCAAAAACGAGAAGACTTAGGAAAAAGGTCGGTGTTAAAACAGATACTGAATCGGCGTTTGAGAAAAAGTTTAATTGTAAAACTAGACTTTTGAGCAAGGAGGAACAGAAGCAGGATGTGGAGGAGCGAAAGAGGAATAATAAGTCAGCGTACAGCTGCGAGTTGTGCGGCAAGGGGTTCAAGAAGGAAAACACATTGATGACACACAAAAGCTACCACGACCCGAGTCTGCCGGCGGAGTGCGACGTGTGCCGGCTGCGGTTCCGGTCGCGGCGCAGCCTGCTGAAGCACCAGGACTGCCACCGCGCCATCTTCACGTGCAACCAGTGCGGGAACGTCTCCCGGAACAGATCGCACGCGAAAGACCACTGCCTCATGCACAAAGGGACCACCTACACATGCCCGTACTGCCAGATCGTGTACCACCACCAGACCTCTTACTACAACCACATCCGGGTCCAGCATCCCGGCCAGAACGAGGCCTGCGACGAGTGCGGGGAGACCTTCGCCGCGGGGAGGGGCATGATGCTGCACAAGGCGCTGACGCACAAACAGAATATCAAACCAAACGTGGACACCAAATGCGCAGTCTGTGATGTCAAGTTTTCGAGCCCCGAAGCGCTGCAAAGGCACGCGGAGCTGAGTGTCGGAGTGCCGCATGCGGCGCTGTGGCCCTGTGCCGCATGCGGCGACACTTGTGGCAGCGAGCCCGCGCTCGCCGCGCATGCCGCAGAGAGGCATCCGCCCGAACAGAGATACTGTCAAGAGTGCAACAAGACGTTCTCTAACGCGGCGTCGTTCTCGCTGCACGTGGAGCGAAAACACAAGAACCAGCGCGCAGTGGAGGCGCCGTTCCGGCCGCGGCCCGGCATTGGCCGCGTGCGGTCCACCGTCTGCGAGATATGCGGCAAGGTGTACCAGAATCTGACGATGCTCCAGTACCACATGAACGGGCACCTCTCGGTGAAGCCCTTCCAGTGCCCGCATTGCCCCAAGGCTTTCACCCACCAGAGCAACCACAGGTTGCATATGAGGGTACACACGGGCGAGCGGCCCTACCAGTGTGAGCAATGCCCTCTGGCTTTCTCCAGGCGGGGCAACTTCACGAAACACATGAAGAACGTACATTTGCGAGTCCAGGTAAAGTGCGACACGTGCGGCAAGATGGTGGGCGCAGGCTCTCTCACCTCGCACATCCGCGCCGTGCACTTGCGGCAGCCGTACGTGCGTCGGAAACGGGACCGGACCGCCGAAAAGAAGCTGCTTCTTGGCCAGTCGTAA
Protein Sequence: MYYYCAVGSVPSSLILRAQRVLALGPLPDHCYVCSRHFDDTMFTNSGKLVRHAVPKRFLDTPLNEDLSINMRECSDEAEERGGGLSDELVACRACLAADGRLYAISGSGLEDALAALTGIAKPESQGLPRHLCAFCVAKLSKCAAFRDSCQRSATLLQTLLDKGPLKMNDVKAINRNSHKLTNNLTRNKVFEFGTDPLLTVLPQIKTEDDENTREVTAFVEVECIRRKDSIKNDFAPQTFDVPIEKQEVKEVKLVKLKTENANAHSDADYMESEVKNDTSDDDTDTSEETLAAVKRGKRKRVKAEKENTKYSKKCKNVKAKADDCPKDEEAPKTRRLRKKVGVKTDTESAFEKKFNCKTRLLSKEEQKQDVEERKRNNKSAYSCELCGKGFKKENTLMTHKSYHDPSLPAECDVCRLRFRSRRSLLKHQDCHRAIFTCNQCGNVSRNRSHAKDHCLMHKGTTYTCPYCQIVYHHQTSYYNHIRVQHPGQNEACDECGETFAAGRGMMLHKALTHKQNIKPNVDTKCAVCDVKFSSPEALQRHAELSVGVPHAALWPCAACGDTCGSEPALAAHAAERHPPEQRYCQECNKTFSNAASFSLHVERKHKNQRAVEAPFRPRPGIGRVRSTVCEICGKVYQNLTMLQYHMNGHLSVKPFQCPHCPKAFTHQSNHRLHMRVHTGERPYQCEQCPLAFSRRGNFTKHMKNVHLRVQVKCDTCGKMVGAGSLTSHIRAVHLRQPYVRRKRDRTAEKKLLLGQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -