Basic Information

Insect: Archips crataeganus
Gene Symbol: pita
Assembly: GCA_947859365.1
Location: OX402045.1:36179514-36202765[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.02 1.3 10.2 0.2 2 23 193 215 192 215 0.93

2 10 0.00034 0.023 15.7 1.1 2 23 221 242 220 242 0.97

3 10 0.00025 0.017 16.2 0.9 1 23 248 271 248 271 0.97

4 10 0.52 35 5.7 1.2 3 23 279 299 277 299 0.95

5 10 0.00028 0.019 16.0 3.3 1 23 307 330 307 330 0.94

6 10 3.9e-05 0.0026 18.7 2.3 1 23 335 357 335 357 0.97

7 10 0.00075 0.051 14.7 8.0 1 23 363 386 363 386 0.97

8 10 0.00031 0.021 15.9 0.2 1 23 400 422 400 422 0.95

9 10 0.0011 0.076 14.1 0.1 2 23 428 449 427 449 0.97

10 10 0.00033 0.022 15.8 0.1 1 23 455 478 455 478 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.02	1.3	10.2	0.2	2	23	193	215	192	215	0.93
2	10	0.00034	0.023	15.7	1.1	2	23	221	242	220	242	0.97
3	10	0.00025	0.017	16.2	0.9	1	23	248	271	248	271	0.97
4	10	0.52	35	5.7	1.2	3	23	279	299	277	299	0.95
5	10	0.00028	0.019	16.0	3.3	1	23	307	330	307	330	0.94
6	10	3.9e-05	0.0026	18.7	2.3	1	23	335	357	335	357	0.97
7	10	0.00075	0.051	14.7	8.0	1	23	363	386	363	386	0.97
8	10	0.00031	0.021	15.9	0.2	1	23	400	422	400	422	0.95
9	10	0.0011	0.076	14.1	0.1	2	23	428	449	427	449	0.97
10	10	0.00033	0.022	15.8	0.1	1	23	455	478	455	478	0.94

Sequence Information

Coding Sequence: ATGGAGAAAAGAAAAGAGTCTTTAAGTGACATAAAACTATGTAGATTTTGTTTAACTCAAGACTCATCGTTAACCAGTTTATATGATCGAAGTCGGGACCCCATATTGGTGACTCTTCCTTTAAAAATCATGGCATGTGTGTCCATCGAGGTATTTCCTTCGGATAAGATGCCCTCTTACATCTGTGAGCGCTGCAGAACATTCATGGATATTTGCTATGACTTCAAACAAATCTGCCGGCGGGCCGACGAGTCCTGCCTACAGTTTGTCCAGAATGGGATTCCAGTGAGTGCGGTTTCCTGGCCTCCTTCCTTAACCAAGATATTCAACCTGACTAAAAAAGCTAGGCCTCTTAATACTGTTGTTGAAGGAGGGGCAACTATTCAAGTTACATCACATGAAATGTCAGAAAATGAGGATGACGAAGAGACTTACAACATTAAGTGGCTTCGGTACGGCCGTCACACATGGCCCAGTGTGCGGCAGCTCAAAGAGGCGTTTCGATGTCGCGAGACAGCGGTAAGGAAGGGTGTGATGGTGCGCGTGCGGCGGCGCTCGGCGGGGTTCGGCAGCTGGCCGTGCGAGCAGTGCGACCGCTCCTACCCGCTGCACCAGCTGCTCGAGATACATATGGCGCAGAAGCATCGCGCGCGCAACGTGCAATGCACCCAGTGCGACGCCAAATTTTTTTCCAAGTACGATCTAATGACGCACCAGTTGCGTCATACTAACGAAATGCCGTTCCAATGCGTTGCTTGTGATAAAAAATTCAAACGACTGATACTGCTTAAGAGACATGAAAAGATGGTGCATGTCGACTTGCCAAAGCACTTGTGCACTAACTGCCCCGCCAAGTTCCTGTCTACGGAGGAACTTGAGGCTCATAAGAAAAGACATGAAGGTTACTTTTCACGACAGCACGTTTGCACTGTGTGCGACAGAAAGTTCCATACCAAAGGTACTCTACAGCGGCATCGGGACGTTGTCCACGGAAAGAAACATTTCTCTTGCGAGTATTGTCCGCACCGATTTTCAACCGTGTCTAAACTGACGCGACACGTCCGTGCCCATGCCGGAGACAGGGCTTACCCTTGCAAATACTGCACCAAGAGTTTCATGAAATCGCATCATTACACGAGGCATCTCCGGTTGAAGCACGAGGAGCAAGTGCGTTTGGCGCGCGGCTCGGACGCGGAGTTCCGCTGCGAGCAGTGCGGCGAGAGTTTCGGGACGCAGGACGACCTCTACTACCACTCGGCTATCCACGCCACGCAGAACCTCATCTGCCCGCTGTGCCAGGAGAAGTTCGAGAACGTGGACGCCGTCACCACGCACATCAGGACACACGTCAACGGAATAGAGTTCATGTGCGAGTATTGCGAGCTGGTATTCACGTCCAAGGAGAAGCTCGACTCGCACATGATCGCCGCGCACGAAGATGAACTGACACCGCGACAGGAGTTGGGTCTGGATGAGTCTTCCCTGGAGGCTGACGCCGGCGACGTTGATGCGGACGTAGACGCAGACGACGACGAAGAAGACAACGGACTAAATGTCAAAGAGGAAGACGATCACATGGTCGTAGAAATAAAAAAAGCAGATGGGTACATGCTCAGGAAGGATATCGAAGTTGGACAAACTACCAATACTAATTCGGAAGATAGCGAGATGGAGGCGACATACACGGAGCTGTCGACGGTGGACACACTGGCGCTCGCGCGCGCCGGCGCTGCGCAGGCGCCCGCGACCACCAAGTCTGAGGCCACATCGTCCAAGGCTTCCCGCCCGTCAGCCAACAAAACCAGCGACAGGATAGGTATCCTTCGGAAAGCCGAGGCTATAAAACGTAAAGCGGCTCAAAAAGAAGATTTGGAAATTCCACAGAAGAAAGAGAGGACTGCCAAAGTTGATAGCACCACCCCCACGACAACACTCACAACGCATCAACTCTCAAGCGACAAGTCGTTGCGCTTGCTGGAGAAAGAATTGCAGGAGCTTACTAGGACTCCATGGCGGAGCGATGGGAAATCAACTAAATTCAGCGAAGCAAAGAGTAAACGGCAGCCAGTTCATACCTCTACTCCTAAACTCAGGTCTGCCGATGAGAAGAAGGCCCAAATAACAAAAATACCAGCAGGGGCGGAGAAAAAGGCTGCAGAGCGGCGCCCACTCACCAAAGATAGTAAAGAACCAAAAGAAAGCAAAGAGGCGCGGAACACGGTCACTAGTACCAAGGAAGACAAGAGTGTTTCGAGCACCAAGGACGACAAACCTGGTACATTTGACAAGGAAGAAAAAACCGTCACTAAAGAGGACAAGAGGGCTGCGTCCGCCAAGGAAAACGAGTTGACCGTCGAGAAACAAGCCAAGGTTACTTCCGCCCAGGAAAATAAGAATAATTCTAAAGTGGAAAAGAGCGGTAACAGGGAAAGCAGGGCTAAGGCTGCTGCTAAAGACGTGCCTAGCGCCAGCAACAAAACAGATGCACCAAGCACGAGCACCACCAAGGAAGACAAACGCAACGCAGCTGACAAGGAAGACAAAGTTACCAAGGAAGATCGAGAGAAGCTCAAAAACGGCGACACGAGCAGCTCGGAAGAAAATGTGGTGCGTCGCTCAACGAGACCTTCTAAAATAAAGAACTACGCCAGTATGATTCGTGATAGAACACGCATGATTCGGGATGAGGACGACGATGAAGAGAACTCTGATGATGATTCTGATCTTGACAAGGAGACAAATCAATCACCAACAAATACGCCGAGTCCAGCGCCGCGCCGCAGGAGCGTGCCGAAGCGGAAGCCAGTGCCAACGCCAGCCAGCGCCGACCGCCGCCGCGGCCGACCGCGCAAGGAGCCATTTACAAAAGATGTCCCTGAGGAAGAACAATGTGGCGACAGTCAAGTCGACAAAGCAGGTAGCAACAGCAAACCGGAAGAGACCATAGATAAAGTTGAAGAGCCTGAACCTGAGGCGAACAAGGCGGCACCAGCAGATTCGCAGAACACGGCAACGGCTGTTACTTCACCGACCACTACCGAATCACAACCGCCGCCGTCCAATATGTTAGTTTCGCCGACTGGACAAACGTTGAAAAAAGTACCCATTAAAGCTCTACCTCCTGGCATCAAACCGCTGCCTTTGCCGATAAATGCTAGGCCGGGTGATTTGTGTCAAATGCAAATCGGAAAGAAAATGGTGAAGGTGCAGAAAATTGTCATGACCAAAGCTGAGGTGGAAGCCATGGCGAAGAAAGGGCTTTTAGAATTGAAGGATGGGACCATGGTGTTAAAGCAAGGTATCAAGTTACCAGGATCTGATCCCGCCGCCTTACGGTCCGGTCTCGTTAATCCAGGAGTAGTTCGAAAAGTGTCTGCAACACCGATGCGGTGTACTTTCGATGGAGAAGAAGCATAA
Protein Sequence: MEKRKESLSDIKLCRFCLTQDSSLTSLYDRSRDPILVTLPLKIMACVSIEVFPSDKMPSYICERCRTFMDICYDFKQICRRADESCLQFVQNGIPVSAVSWPPSLTKIFNLTKKARPLNTVVEGGATIQVTSHEMSENEDDEETYNIKWLRYGRHTWPSVRQLKEAFRCRETAVRKGVMVRVRRRSAGFGSWPCEQCDRSYPLHQLLEIHMAQKHRARNVQCTQCDAKFFSKYDLMTHQLRHTNEMPFQCVACDKKFKRLILLKRHEKMVHVDLPKHLCTNCPAKFLSTEELEAHKKRHEGYFSRQHVCTVCDRKFHTKGTLQRHRDVVHGKKHFSCEYCPHRFSTVSKLTRHVRAHAGDRAYPCKYCTKSFMKSHHYTRHLRLKHEEQVRLARGSDAEFRCEQCGESFGTQDDLYYHSAIHATQNLICPLCQEKFENVDAVTTHIRTHVNGIEFMCEYCELVFTSKEKLDSHMIAAHEDELTPRQELGLDESSLEADAGDVDADVDADDDEEDNGLNVKEEDDHMVVEIKKADGYMLRKDIEVGQTTNTNSEDSEMEATYTELSTVDTLALARAGAAQAPATTKSEATSSKASRPSANKTSDRIGILRKAEAIKRKAAQKEDLEIPQKKERTAKVDSTTPTTTLTTHQLSSDKSLRLLEKELQELTRTPWRSDGKSTKFSEAKSKRQPVHTSTPKLRSADEKKAQITKIPAGAEKKAAERRPLTKDSKEPKESKEARNTVTSTKEDKSVSSTKDDKPGTFDKEEKTVTKEDKRAASAKENELTVEKQAKVTSAQENKNNSKVEKSGNRESRAKAAAKDVPSASNKTDAPSTSTTKEDKRNAADKEDKVTKEDREKLKNGDTSSSEENVVRRSTRPSKIKNYASMIRDRTRMIRDEDDDEENSDDDSDLDKETNQSPTNTPSPAPRRRSVPKRKPVPTPASADRRRGRPRKEPFTKDVPEEEQCGDSQVDKAGSNSKPEETIDKVEEPEPEANKAAPADSQNTATAVTSPTTTESQPPPSNMLVSPTGQTLKKVPIKALPPGIKPLPLPINARPGDLCQMQIGKKMVKVQKIVMTKAEVEAMAKKGLLELKDGTMVLKQGIKLPGSDPAALRSGLVNPGVVRKVSATPMRCTFDGEEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00325724;
90% Identity: iTF_00156547;
80% Identity: -