Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402057.1:11718634-11735608[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00049 0.033 15.3 0.2 2 23 144 165 143 165 0.93

2 10 0.00071 0.048 14.7 2.4 1 23 171 193 171 193 0.96

3 10 8.1e-05 0.0055 17.7 0.3 1 23 284 306 284 306 0.98

4 10 0.00027 0.018 16.1 0.1 3 23 383 404 381 404 0.92

5 10 0.003 0.2 12.8 0.3 1 23 419 441 419 441 0.96

6 10 1.2e-05 0.00078 20.4 0.2 1 23 469 491 469 491 0.98

7 10 0.00076 0.051 14.7 0.2 1 23 497 519 497 519 0.97

8 10 0.00043 0.029 15.4 0.3 1 23 525 547 525 548 0.95

9 10 0.016 1.1 10.5 1.2 1 23 561 583 561 583 0.95

10 10 0.047 3.1 9.0 0.0 1 20 731 750 731 753 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00049	0.033	15.3	0.2	2	23	144	165	143	165	0.93
2	10	0.00071	0.048	14.7	2.4	1	23	171	193	171	193	0.96
3	10	8.1e-05	0.0055	17.7	0.3	1	23	284	306	284	306	0.98
4	10	0.00027	0.018	16.1	0.1	3	23	383	404	381	404	0.92
5	10	0.003	0.2	12.8	0.3	1	23	419	441	419	441	0.96
6	10	1.2e-05	0.00078	20.4	0.2	1	23	469	491	469	491	0.98
7	10	0.00076	0.051	14.7	0.2	1	23	497	519	497	519	0.97
8	10	0.00043	0.029	15.4	0.3	1	23	525	547	525	548	0.95
9	10	0.016	1.1	10.5	1.2	1	23	561	583	561	583	0.95
10	10	0.047	3.1	9.0	0.0	1	20	731	750	731	753	0.93

Sequence Information

Coding Sequence: ATGGATGGTGAGGGAGATGACTTCAATCTCCATTGGGAGGACGATGTGGAGAGCAAGCATATCCCAGGGGTGGTGGCTTCAGAAGAAGTTATTTGTGGCTTAGACAATGTACAGTCTGGCTCTTTTTCAAACATGTCAAATGAAGTTGTAATCCCGGACACTGATCAAATAGCTGCTGAGAACTTGATGTACCTATCACAAGATGTTGTGAGCTACACAGATGCTGCTGAACTAGCTGTTGACCCGAGTGTGGAGTGTGTCACCGAAGAAGTGATCACTGATGACTGGGTCAACCCTGGAGGACAGGAGAGAGTTGAAGTTCCGTTGGATCACTTTGCAACAGCTGCTCTGGATAATATAAAAGAGGAAAATGATATTGACGTCCCACTGCCTACTGATCAGGACCAATACACAGCGATGCGTCCGTGGCCGTGCGACTTCTGTTCCCGCCGCTTCCGCAAGAAGGCGGCTCTGATGAACCATATGGTGGCGCATCAGAACGACCGCCCGCACGCGTGCAACCTGTGCGGAGTGCGCTACGTGCGCAAATGCGATCTCATGAACCATCTAAAAGTGCACGCGATGGTGCCTGATAATGCTGACCCGGTGGATTATGCTGACGTGCTGGATAATAGTCAAGCGGTTAAACCAAAGAAAAAGAGAGGGCGACGAAAAAAGAACCCTGAACCAGTTGAGAATGGGCTCTGGGAGAACATGACGTCAGCGCGAACGCAACAGTGGTCGCGGCGCGCCCGCTCGCCGCCCAAGCCGCCGCCGACGCCGCCCTCGCCGGCCAGCGAGCCGGAGCCGCCGTCGCCGCCGCCCCCGCCCGCCGACCCCAGCCGGCCGTTCGTGTGCCGCCACTGCGGCGTCGGCTTCGCGAGGGAGAAGGCGCTACAGTCGCACGCCAGGGTGCACGGCGGCGATTCCCCGATGGAGTGCAGCGCGTGCGGCGAGCTGTGCTGGTCGCGGGAGGCGCTCGCGACGCACGCGCGGCTGCGGCACCCGCACCAGCCGCCCCCGCCCGAGCGGGAGCCCTACGACTCCAACTCCGGTGACGACGACATGGAGTACCAGCTGTCCCCGTTGGCGGACAGCGGCAGCGAGCGGGCCGTGTTCGACACGCAGCGCGGCCCGGAGCTGTTCTGCCAGGACTGCGGCGTGGCCTTCCAGCGGGCCGACCTGCTGCGCCGGCACCAGGCGGCTGCCCACAGCTATAAGCGCCACGACAGTTCGTCGAGCACGTGGGCGGAGCACACATGCGACGTGTGCGGCGAGACGTGCGCCGACGCACTGCAGTTGCTCGCGCACGCAGAGAGACACGCCGACCGTCAAGCAGCGCCTACCAGGTTAAAGAAAATGGGGCGGGGAAGAAATAACGCTTCGTCAAATAGCTCGCGGCAGTTCCCCTGCAGAGAATGCGGCAAAGTGTTCGGGTCTCGCAGCTCCCAACAGATCCATATCCGCATCCACACCGGAGAGCGACCCTACGCTTGCCGCTTCTGCTGGAAAGCGTTCGCCGACGGAGGCACGCTTCGCAAACACGAACGGATACACACGGGAGAAAAGCCGTACGCGTGCGCGGTGTGCCCGCGCGCGTTCAACCAGCGCGTAGTATTACGGGAGCACGTCCGCTCGCACCACTCCGCGCCCGACCGACGCGCAAACGGTGGACCGGCATTCTGCTGTGTGGTGTGCGGACGGACTCTTCATTCGAGCGCGGAGTTAGTGCAGCATCTTATTCAACACTGTGACGCCAACACGGCGCTAAAGCGACAACCACAAACCGGCCCCCGCAAGTACAAGCGGCGGCGGAAAATCAAGGCGGACGCGGAGTCCCCGCGCCACGAGTGGGAGCGCGGCTCGGCGTCCCCCCCGCGCGCCGACCCCTCCCCGCCGCCGCCCGCGACGCCGCGCCGCCGCCGCCGCCGCGCCCCCGCCCCCGCCCCCGCCCCCAGGCCTAAACTCATACACACCGAGGAAACCGTCAGACCGAGGACCAAGCAGGTTCGAGGCCGCCGTCCCCCGCGGCACCCCGCCGACGACCTGCGGGCGATCCGACCGCGCTCGCCGACCCCCTCCCCCTCCCCTTCGCCCTCCCCTTCCCCCGTACCCTCCCCACAATCGCCCCCCGCGCCTTCACCCCCTTCCTCACCTCTAACCACTTCCACAACCCACGAAGGCGGCCCATTCAAATGTGAAATGTGCGCTCTAGAGTTCCCTCGGCGCGATGCGCTGTTATTACACGTTCCTGTACATATATGA
Protein Sequence: MDGEGDDFNLHWEDDVESKHIPGVVASEEVICGLDNVQSGSFSNMSNEVVIPDTDQIAAENLMYLSQDVVSYTDAAELAVDPSVECVTEEVITDDWVNPGGQERVEVPLDHFATAALDNIKEENDIDVPLPTDQDQYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAMVPDNADPVDYADVLDNSQAVKPKKKRGRRKKNPEPVENGLWENMTSARTQQWSRRARSPPKPPPTPPSPASEPEPPSPPPPPADPSRPFVCRHCGVGFAREKALQSHARVHGGDSPMECSACGELCWSREALATHARLRHPHQPPPPEREPYDSNSGDDDMEYQLSPLADSGSERAVFDTQRGPELFCQDCGVAFQRADLLRRHQAAAHSYKRHDSSSSTWAEHTCDVCGETCADALQLLAHAERHADRQAAPTRLKKMGRGRNNASSNSSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAFCCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKIKADAESPRHEWERGSASPPRADPSPPPPATPRRRRRRAPAPAPAPRPKLIHTEETVRPRTKQVRGRRPPRHPADDLRAIRPRSPTPSPSPSPSPSPVPSPQSPPAPSPPSSPLTTSTTHEGGPFKCEMCALEFPRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01464422;
90% Identity: iTF_01136062;
80% Identity: -