Acra000977.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Archips crataeganus
Gene Symbol
-
Assembly
GCA_947859365.1
Location
OX402073.1:7985334-7995951[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.011 0.73 11.0 0.1 1 23 181 203 181 203 0.96
2 10 0.51 34 5.8 0.2 2 20 231 249 230 251 0.92
3 10 0.00041 0.028 15.5 0.4 3 23 276 296 274 296 0.96
4 10 7.6e-07 5.1e-05 24.1 0.2 1 23 300 322 300 322 0.98
5 10 0.016 1.1 10.5 0.4 1 23 327 350 327 350 0.94
6 10 0.17 11 7.3 0.4 1 23 356 379 356 379 0.92
7 10 7.8e-05 0.0053 17.8 0.7 1 23 386 409 386 409 0.98
8 10 2.7e-05 0.0019 19.2 2.3 1 23 415 437 415 437 0.98
9 10 2.7e-05 0.0018 19.2 5.4 1 23 443 465 443 465 0.96
10 10 3.4e-06 0.00023 22.1 1.0 1 23 471 493 471 493 0.98

Sequence Information

Coding Sequence
ATGGAAATAACAGTGGAAAGTCTGCCGTTGCTCGGCGTTTGTAATTTATGTTTGAATGAAGGCGCTGTTAAAAGTATGTTGGCTGGTAATAAAGAAGCAAATTTACCGTCTTACGCCGATATATTATTGAAATGCTTCAGTGTCGATATAACCACATTGGAACTGGGCGACACGAAACAGCTGATCTGCGACTCCTGCATCGCCCGTCTGTTCGACTGCCAGAGCTTCAAAGACCAGGCGCTCACATCCCTGAAGACCCTCGAAGAGTCTGCCAAACTGTTCAATGTGAAGAAAGAAGAACAGAACGAGGATTTCAATGATGAAATTGATGGCGTTGACTTTGACGATGATATTGATGAGGATGACAAAGCATTATCGGTTATAATAAAGAAAGAACCGCCCGCCGAAGTCTTCAAACCGCGCAAGACGAGGAAGAAAAAGTTCATCACCATCTCTCTGAAGAAACCAAAGGATTTCACTGAAACTGAAACAATGCTGGCTCAGGGTCTCTTCCCTTTCAAAATACGAAAAAACCGGAGCTTCTCCTGCGCCATTTGCCCAGAGAGCTCAACAAACCTAGAAGACATAAAGAAGCACGTTATCCAACACAACAAGAAAAACATCCACATAGCTTTCAAGAAAATGATGTTCTCGAACTCTCAACGCTTCTACAAGAGCTCGACACAGCTCCGATGCAAAATCTGTACGACAGATTTGAACAACTTCGAGGAACTAAATGAGCATGTCGAACATTGTACTAGATTGAAGTTCACGAGTGTCAAATGGAGCAACTTGCCTTTCAAGTTGGAGAAGGACCAACTGGATTGCCCGGTGTGCAAAAAAACGTTTCTAAACTTCGTCAGTTTGAACACCCATATGAACGTTCACTACCCTAATTATATATGTGAGAATTGTGGGAAGGCTTTCGCTTCAAAGGCCAGGTTACGTGGACATATGAGGACGCATGAAGTAGGTGAGTTTCCTTGTAAATATTGCGATGCTGTTTTTGACAGGGTGACTAAGAGAGAAAATCATGTGTCTAAAGAACACAAAGCAGGGGTCAGGTACGCCTGTAAGCGTTGTAACATATCGCTTAGCTCCTTCTATGCTAGACAAAAGCATCTAGCGGAAATACATAATGAAGAGCTAAAGAGGTATAAGTGTAAAGCTTGTCCGCAGAGCTATATTACTCCGGGGCATCTCTCGAGCCATGTGCGGAGGGATCATTTGAATGAACGCAACCATAAATGTGACAAGTGCGATTTGGCTTTTTATACTAAGAACGCTTTGAAAATGCACATGATTAAGCATGACGGCGAAAGGATACATGCGTGTCATATATGTCAGAAGTCCTATCAAAGGAAGAAGACTTTGAGAGAGCATATGAGAATACATACGAATGATAAAAGGTTTATATGCCCTGTGTGTGGGCGTGCGTTTACACAGAAATGTACGTTGAAGGGACATTTAAAAGTGCATGAGAGGAAGGTTGAGTTGGATGAGAAGATAGTGCAGCCGCTGCATTCTATTTAG
Protein Sequence
MEITVESLPLLGVCNLCLNEGAVKSMLAGNKEANLPSYADILLKCFSVDITTLELGDTKQLICDSCIARLFDCQSFKDQALTSLKTLEESAKLFNVKKEEQNEDFNDEIDGVDFDDDIDEDDKALSVIIKKEPPAEVFKPRKTRKKKFITISLKKPKDFTETETMLAQGLFPFKIRKNRSFSCAICPESSTNLEDIKKHVIQHNKKNIHIAFKKMMFSNSQRFYKSSTQLRCKICTTDLNNFEELNEHVEHCTRLKFTSVKWSNLPFKLEKDQLDCPVCKKTFLNFVSLNTHMNVHYPNYICENCGKAFASKARLRGHMRTHEVGEFPCKYCDAVFDRVTKRENHVSKEHKAGVRYACKRCNISLSSFYARQKHLAEIHNEELKRYKCKACPQSYITPGHLSSHVRRDHLNERNHKCDKCDLAFYTKNALKMHMIKHDGERIHACHICQKSYQRKKTLREHMRIHTNDKRFICPVCGRAFTQKCTLKGHLKVHERKVELDEKIVQPLHSI