Acra000692.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402073.1:4099075-4101428[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.047 3.2 9.0 1.8 1 23 31 53 31 53 0.94 2 17 0.99 67 4.8 0.1 2 23 84 106 83 106 0.92 3 17 0.21 14 7.0 0.4 2 23 128 150 128 150 0.95 4 17 0.72 48 5.3 1.1 1 22 155 176 155 178 0.72 5 17 0.13 8.9 7.6 1.0 1 23 183 206 183 206 0.94 6 17 0.18 12 7.2 0.4 1 23 211 234 211 234 0.89 7 17 0.0026 0.17 13.0 0.4 2 23 242 264 241 264 0.96 8 17 0.00034 0.023 15.7 2.0 1 23 270 292 270 292 0.97 9 17 2.3e-07 1.5e-05 25.7 3.4 1 23 298 320 298 320 0.98 10 17 0.25 17 6.8 0.0 1 23 367 390 367 390 0.90 11 17 0.063 4.2 8.6 1.6 2 23 466 488 465 488 0.95 12 17 0.016 1.1 10.5 2.4 1 23 493 516 493 516 0.91 13 17 0.32 22 6.4 0.8 1 23 521 544 521 544 0.96 14 17 0.0024 0.16 13.1 1.2 2 23 550 572 549 572 0.96 15 17 0.00044 0.03 15.4 0.2 2 23 580 602 579 602 0.95 16 17 4.6e-05 0.0031 18.5 0.4 3 23 610 630 609 630 0.97 17 17 7.8e-06 0.00053 20.9 1.9 1 23 636 658 636 658 0.98
Sequence Information
- Coding Sequence
- ATGAGATTACAAATCGAGATGAAACGAAGAAACATAGAATCCGTATTACTATACAGTAACGTTACTCCCTTTATTTGGCACCGCGGGAAGCATATGTGCTTCTTCTGCCAGGTCGCCTATAAACAACCCAGTAAGCTGCTAACCCACTACGACGAACACGACTGCGTTGACTTACCAACGGCCGTTAAGCGTTACACTCAAAAACGGGGCAATAGAGAAGCAGCCATCAAAGTAGAAATCACTGATATATACTGCAAGCTTTGCTCCGAAAACATGGCCAACTTAGACGAGCTCATCCAACATTTGATTGAAAATCATAACGTGGATTATGATCTTAATATCCCAAACTGCTTCCTCCCTTTTCGATTGAAAGGCCCTCCTACCTGCGGCACTTGCAACATGGAATTCGATCTGTTCGAATATCTACTCCGTCATGCGAACAAACAGCACCTTAAACACATTTTCATTTGCGAAATATGCGGCAAAAGTTCCTTCTCTGAACGCTATCACGTCTTACACGTACGCAATTTCCACAAGAAAGGAGGCTACCGATGCGAATATTGCGATCTGAAATTGTCGACTTTGCGTAAAAAATCGCTTCACATACAAAACGTGCACAAGGCGAATCAATTCAAATGCACTATCTGCGATGTGATGTTGAAGAGCTCGTATTTTAAAAACTTACATCTAGCAGAAGTGCATGGGGTCGAAGAGAAAAGGATAAAGTGTCCACACTGTCCCAGAGTTTTCCCTCAGGATAATATAATGATACGTCATATGAAGCGTGTGCATTTGAAACTTAAGGAACACAAGTGCCCTGTGTGCGGGATAAGATTCTTCGAGAGCTACCAGATGAAAAATCATCTGATGTATCACTTTGGAGAAAAAAATTTCAGCTGTGAAATATGTGGGAAAACTTTTGTAAGAAAGCATTATCTCACCAAGCATTTGAATTCACATAAAATTAATTACGCTTCTAAGGATAGGGGGCACAAGAAAACCGCGCTCCATCGCCACAAGCTGCGCTTGATTCGGCGGAACGTCGGTATCATTCTAGAATACGGCAACGTCACGCCTTTCTTGTGGGCGCGCTCTACGTACTTGTGTTTCTATTGCAAAGTACCAGTCGTGGACCCAGGCGACTTGCGCGACCATGTCGCCGAAGTGCACCAGTTCGTAGACCTCGATAGCATCCTCTGTGAACGCATCTTAAACACCTGGGACAGCGAAGTACCTGTCAAACTAGACGTCAAAGATATCTCCTGTAAGCTCTGCATTACACCCATCGCTAACCTAGCTGATCTCATCACCCACCTCAATGAAGAACACGAAGTGGCTTACGATACCACTATACAAGACTGTCTGTTCGCTTTCGAGCTGGGAAAAGAGAAACTCAAATGCTCGTTCTGCGACTCACAGTTCAACTATTTCGAGTACCTTCTCCGCCACGCGAACAAGTATCACATGAACCACGACTTCATTTGCATGGTGTGCTACAAATCTTTCCACCGTAAAGTGGCATTGATGACCCATTTCAACGACTACCATAAAGAAGGAGGCTATCCTTGTGAGTTATGTGGGTTGATGTGCGATTCGGCGCCAAAACGGTACAACCACAAGAAAACTGTGCACTTGATAGATCATTTAAAGTGTCCGCAATGCGACGAAGTTTGCAAAAGCAATTATTATAAGAAAGTACACTTGGCTACGGTTCACGGAGTCGAAGAGTGCATAAGCGAGTGTCCCCACTGTGGAAAAATGTTTCCTCAGAAAGGGATAATGGCAGCGCACGTCAGGCGAGTCCATTACAAAGAGCGGAATGTGGCTTGTGACGTGTGTGGTTACAGATTCTTTAACAAGGCCCACTTGGTCGCGCATATGGTTAAGCATACCGGCGGAGTAGCTTTTACGTGCGATGTGTGTGGAAAATCGTATTTGAGGAAGTCTACGCTTAAGCAGCACATAAAGAGGCACAAAAATGGTCGCATAAAGATATCATAG
- Protein Sequence
- MRLQIEMKRRNIESVLLYSNVTPFIWHRGKHMCFFCQVAYKQPSKLLTHYDEHDCVDLPTAVKRYTQKRGNREAAIKVEITDIYCKLCSENMANLDELIQHLIENHNVDYDLNIPNCFLPFRLKGPPTCGTCNMEFDLFEYLLRHANKQHLKHIFICEICGKSSFSERYHVLHVRNFHKKGGYRCEYCDLKLSTLRKKSLHIQNVHKANQFKCTICDVMLKSSYFKNLHLAEVHGVEEKRIKCPHCPRVFPQDNIMIRHMKRVHLKLKEHKCPVCGIRFFESYQMKNHLMYHFGEKNFSCEICGKTFVRKHYLTKHLNSHKINYASKDRGHKKTALHRHKLRLIRRNVGIILEYGNVTPFLWARSTYLCFYCKVPVVDPGDLRDHVAEVHQFVDLDSILCERILNTWDSEVPVKLDVKDISCKLCITPIANLADLITHLNEEHEVAYDTTIQDCLFAFELGKEKLKCSFCDSQFNYFEYLLRHANKYHMNHDFICMVCYKSFHRKVALMTHFNDYHKEGGYPCELCGLMCDSAPKRYNHKKTVHLIDHLKCPQCDEVCKSNYYKKVHLATVHGVEECISECPHCGKMFPQKGIMAAHVRRVHYKERNVACDVCGYRFFNKAHLVAHMVKHTGGVAFTCDVCGKSYLRKSTLKQHIKRHKNGRIKIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -