Acra015821.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Archips crataeganus
Gene Symbol
-
Assembly
GCA_947859365.1
Location
OX402045.1:28060871-28081262[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.022 1.5 10.0 0.8 1 23 183 205 183 205 0.98
2 28 0.00054 0.037 15.1 0.4 2 20 238 256 237 258 0.93
3 28 0.00012 0.0078 17.2 0.5 3 23 293 314 291 314 0.96
4 28 0.00016 0.011 16.8 0.7 1 23 365 388 365 388 0.95
5 28 0.09 6.1 8.1 0.1 1 23 412 434 412 434 0.96
6 28 0.00012 0.008 17.2 2.2 2 23 473 494 472 494 0.96
7 28 0.0011 0.077 14.1 3.8 2 23 543 565 543 565 0.97
8 28 0.00018 0.012 16.6 0.3 1 23 615 638 615 638 0.97
9 28 0.0022 0.15 13.2 0.2 1 23 694 716 694 716 0.97
10 28 0.014 0.98 10.6 5.6 2 23 728 749 727 749 0.96
11 28 0.034 2.3 9.5 1.7 2 23 761 782 760 782 0.96
12 28 0.0041 0.28 12.3 1.0 1 23 792 814 792 814 0.98
13 28 0.0094 0.63 11.2 7.2 1 23 842 864 842 864 0.97
14 28 0.0028 0.19 12.9 3.0 1 23 875 897 875 897 0.98
15 28 0.00028 0.019 16.0 1.1 1 23 905 927 905 927 0.97
16 28 0.0007 0.047 14.8 0.1 2 23 947 969 946 969 0.97
17 28 0.044 3 9.1 1.0 1 23 987 1009 987 1009 0.93
18 28 0.26 18 6.7 3.7 1 23 1016 1038 1016 1038 0.96
19 28 0.017 1.1 10.4 0.7 2 23 1049 1071 1048 1071 0.95
20 28 0.0039 0.26 12.4 0.3 1 23 1093 1115 1093 1115 0.97
21 28 9.2 6.2e+02 1.8 6.0 2 23 1158 1180 1157 1180 0.94
22 28 0.0067 0.45 11.7 0.2 2 23 1196 1217 1195 1217 0.95
23 28 3.6 2.5e+02 3.1 5.5 5 23 1227 1245 1225 1245 0.94
24 28 0.017 1.2 10.4 0.8 2 23 1256 1278 1255 1278 0.95
25 28 0.29 20 6.5 2.1 3 23 1296 1313 1295 1313 0.88
26 28 0.18 12 7.2 1.8 2 21 1317 1336 1317 1337 0.93
27 28 1.3 90 4.4 2.6 2 23 1385 1406 1384 1406 0.93
28 28 0.0054 0.36 12.0 0.7 2 23 1417 1439 1416 1439 0.95

Sequence Information

Coding Sequence
ATGGCCGCTAATTTAGTTTTTTACCAAACAACCAGAGATCGCTGTAGTCGCATGAAAAGTGTGATATATGTTTATGAAGGTGATGGACTGCCAGATAAGGTATGTGCTGAGTGTATTCAAAAGCTCAGCAGCGCATATATTTTCAAACAGCAATGTGAACGAGCTGATCAAGAATTACGAAGAAACTATGTGCCACCACCAGGATTCAGCGTCAGCCCGCCGCCACCAAATAGACAAAGCAGCGATTCTGCGTTGTCCATCCACACTGACACTTCCAATCAAACTAAACCTTCCTTCACTTCTGAAGCCGATCCTACCAAAAGGAATAGTCGCAAACGCAGCCATGAAAGTGTAGAAGACGTTTCTATCAGCAGTAAATCACACGGTATTCGACCGACAAGTTCAAAACGTGTAGAAGAACTTAGAAACAGTCACAAAAAGCCTAAGAAATCTGGAAATTATTATGCAGATTCTGATTACGAGGATAATAGCGCTTCTCATTTCTCTGCTGAAACCGATTCTGACGAGCCACTTTTAAAAGACAAATTTAAATGTAAACTTTGTGCCAAGCAGTTTCAGTCAATAAAGAGCTTAGCAGCTCATTCCAAAGTTCATTCGCGCAATAAAACTAAAGATATTTTACCAGAAAATGTCGTGGTGAATATTCCAAAGACTAATTTACAAGATGCTTCAGATGTTGACGATCAACTTAGCTGCGAGAAATGTGGTAAATCTTTTAAGTTGAAGATTATGCTGAATCGTCATTATGATTCGTGTGGTAAATCACCTCAAAAGTCACCCACGAAACCATTCGAAAAGGAGTTACTAATATCATTAGAACCGATTGATGGAATACAAGGTAATAAAAAAATTGACTGTCAAATGTGTACAACAAAATTCAAGACTATTGAAAATTTGGAAAAACATATGAAAGTTGTCCATGCTGCTGTGCTTCAAAAATTCAAGTCTGAGACGAAACCAGATAACGGCAAAGTGTCGGTACCTTGCATTTACTGTAAGAAGCCATTTGATGACTATTATGTTCACAGTGAGCATTTCAGCAAGTGTGCCCAAAGTACTAACGCTTCCACATTTGAATGTCCCGTCTGCAAAAAGATAACGACAAGAAAGGCGTCATATTTTCGTCACATCAAAGACGTGCACTTTGAGCCTCGCATGTGGGCGCTTAAGCCGGAGGCGGAGGCGCCGGTAGCGGCGGCGCAGCAGGCCTTCTTCGAGTGCCGCATGTGTAGCAAGCGGCTGGCGTCCGAGCAGCTACTCATCACGCACCTCGCCGCACACGTCTCCAACATCGACGGCGGTGGCGAAAACGACGTCGCCGACGACGAGTCCAGGCCGAGTACCGTTGAAGATTCTTCATCGATACTCTCTGATACCAGTGGCAATGGCCCTCTGCAGTGCAACTACTGTGATAAGAGATTTAAGTATCGGAAGTCTTTAGTCAGCCATGAATTAAAACATACCCAAATGGAAGTTAAAAGGGAGGACGAAGTAATGCCGTCGAGCAGTGCGGCGTCGGCGGAGGCGGCGGCGGCGGCGGCGGCGGCGGGCGCGTACCGCGAGGAGTCCGCGTCCAGCGGCAGCGGCGAGGAGGGCGACGACAACACGTGCGACATCTGCGAGAAGCAGTTCTCCTACAAGCGCCTGCTCGTGCACCACAAGCGCACCAAGCACAACATGAGCTCCGGCACTAAGCGGGCTTCCATCATTCTCAAAGACTGCCTCGTGCGATGTCTTATATGCGATATCGACATGAAAGTCAGTGAGGTCAACGAGCATAACCAGAAACATATTAAAGCCAATATGAAACCGCGTAATTTGTATACATGCCTTGATTGCGGAGAGAAATTTAAAAGTCGCACGGTGCTGGCTAACCATATCAAACTGGTACACAGACTCAAGCAGTTGCCGCCTAAACAATTCGAAGGCGCAGATTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAGCCCCTGGATGAGATCCAGAGTCACAACGGCTTTGGTGAGGTTCCGGACGAGCAAGAATACTCTCCGTCTATAAATTTAAGTGGTTTTACGTGCACTATCTGCGGGAAGAATATGCCCACTCTAATTTCACTTAAACGACATGTAAACTGGCATTCGAATGTTGGAAATCAACTAGAAAAAAAAATTGAATGTTTTGTTTGTAAAGAGACGTTCCGGTTTCAATGTCACTACAAGTTGCATATGCGTGAACATTATCGCGACACTAATCTTGACCCCAAACTTCTCACCTGTAACATCTGCAATCGAAAAAGCAAACACTTGAGGGCAGCTCAAGCTCACATGAACTACCACAAACAGACGCGATTTCAAAATAAAGACTACCAGTGTTCCATTTGCAAACGCGTCTTCCAATATCGAAAGGTTTACTTGTCGCACATGGCGATCCACTACAAGCGTGGCGAGAGTCAGAATACTATAGTAGGGGACGCACTGCCTAACACCGTAGATAAATCCGTTTTTGATGGAACGCATACTTGCCTCCACTGCGGTAAGGTTTGTGACTCTGAGAATTCATTAAAGCATCATATGTCTTGGCACAATTCGAAAACTTTGTTGTTCGGTGCGCGCCACGAGTGCCCGATTTGTAAAATCACTTTTACTAATAAAAAAAGACAAGAGCTACATACAAGAACTCATTACGAAGATGAAAATGGTCCTTTCAAATGCACAATATGCGGAAAGGGATACAACGACGAGAACTTTTTCCGAAGGCACGTCAAAGGACATAACTTCGACCATCAGTCTCACAAGAAAAGAATAGAGAAGTTGAGAAAAGATAAAGTGAAGTGTCCAATATGTGTGCGCTATTACCCGGACTGGGTGAAGCTGATCCGGCACCTGCGGCGCACGCACCCCGAGAGCAAGATGGTGAAGCAGGACCCGGAGGCGCCGCCGCCGCGCGCCTTCGCCTGCAAGCTGTGCGCGCGCGTCTTCCGCGACGAGCGCCGCCTGCGCCACCACGAGGAGGCGCACCTGCGCAAGCCCGAGTTCTTCAAGTGCAAGTTCTGCGGCAAGAAAACCATCTCGCTCAAGAACCACAACTTGCACATCAAGGGCCATCTCACCACCAAGCACACCGACAACCCTCTCAAGTGCCCACAGTGCGAGGAGCGATTCGTCAAGGGATATGACTTGCATTATCATTTACGAGATGTGCATGACATCAATGAGACGTGGATTGCGGAACGGACCGAGCAAACATTGAATGGCCCGTTGAAAGAGTTCCAATGCTCTATTTGTCTCAAAATTCTTGCTAGTAAAGGAAACTATGAGAGACACTTGGATTACCACAACTCTCTAAGGTGCAACTATTGCTATGATTATTTTAGCTCCCTGAGGTTCCTGGAAGGCCATCTCACTTTCAGTTGTGATAAAAAGAAGTTGGTTGGTGATACTGAAATATATCCACGAAAGATTAAGTGCCACATTTGCTACAAAGCATTCCATTTGCAAGTTAAACTCGACTGTCATCTTCGCACACAACACGACATAAAGGTTTCCAAGGAAGCCTCCAAGAGCAGGAAGGATCTCGTTTGTGACTATTGTTTCAGAGTTTTTGAAAACATAGACGCTTTAACGACGCATAAAATATATCACCGCACTGTTGGTTATTTCGGATGCATATACTGCAAGAGGAAATTTAACACCTTGACTCTTTACAGAAAACATAAAAACCATCACTTTGCTCAATTGAATGTCGATAATCCAACTAAATGTGAACATTGCGACGAGACCTTCGTCGCTTTCAGAGAAATGATTTACCATATGAGAGACGTTCACGGAGACAACAAAGAGTGGCTTGTAATGCCTAAGGAATCCATCGAGGAGATGTGCCCTATCTGCAACAAGGTGTTCTTCAACCTGCACAGGCATTTAGACTATCACGAAACGAATCGATGCAAAAAATGCGGCGAGTACTTCTACTCGCGAACCGACTTCGACAGTCACCTCTGCGCCATCGAGAGCGATGACGAAGCGAGCTGCGCCGATCGGGACATGCGGCCGCAGTACGAGGAATGCCGATTCTGCTTCAAGCCTATAACTAGGAAGAGCTCGAAGGCGAAACACGATCACATTCACAAAGGCTCTGGATCCATTTCTTGTCGATTCTGCTCGCATAAGTTTAAAACAATGGATGCATTCAACATACACGCTTTCTCTCACCGTAGTCGAAAATATAAGACTAATCCGTTGAAATGCCGCAAATGTGGAGAAAAATTCATTAAATATGGGCCATTCATGAAACATATGAAGGAAGTGCACAATTCCATTCAAAAAATGCACTATCGAGCTACCGTGAAGGCGGAGCGTTGTGTGGTATGTGGGGACGAATTCCCCAACCTGCATAACCACTACCGCGCGCACCTGCAGAACCGTTGCATGGCGTGCCTCAAGTACTTCACCTCGTCGCGCCTGTTCGCCGAGCACGAGTGCGCCAAGCCCGATGCCGACCCCACCAAGGTCTTCACCTCTGAACAGAACTTGACCTTACTGATCAACACTTACGTTCCTAAGGACGACGTAGACGAACAAAAACATTACGGTCAAAGCATAGACGATCATGATGACCGCAATGCTCTGCAGGGAATGGCTGACGAGGAGAGTCAAAACTCGAATGAGAATGATCATTTCCGACTTCAGTGTCCCATTATATCGGATGTGCTGTCACTGTACCAGAAGCAAGAGGCGGGTGGCGCGGAGGACGGCGACGCGGGCGACGCGGGCGACGCGGCGGGCGCCGACGAGGTGATCGCGCTGTCGGACGACGAGGTGGGCGTGCTGGACAACGACAGCTGCCCCACTATCACTATAGACGATGATGATTAA
Protein Sequence
MAANLVFYQTTRDRCSRMKSVIYVYEGDGLPDKVCAECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSVSPPPPNRQSSDSALSIHTDTSNQTKPSFTSEADPTKRNSRKRSHESVEDVSISSKSHGIRPTSSKRVEELRNSHKKPKKSGNYYADSDYEDNSASHFSAETDSDEPLLKDKFKCKLCAKQFQSIKSLAAHSKVHSRNKTKDILPENVVVNIPKTNLQDASDVDDQLSCEKCGKSFKLKIMLNRHYDSCGKSPQKSPTKPFEKELLISLEPIDGIQGNKKIDCQMCTTKFKTIENLEKHMKVVHAAVLQKFKSETKPDNGKVSVPCIYCKKPFDDYYVHSEHFSKCAQSTNASTFECPVCKKITTRKASYFRHIKDVHFEPRMWALKPEAEAPVAAAQQAFFECRMCSKRLASEQLLITHLAAHVSNIDGGGENDVADDESRPSTVEDSSSILSDTSGNGPLQCNYCDKRFKYRKSLVSHELKHTQMEVKREDEVMPSSSAASAEAAAAAAAAGAYREESASSGSGEEGDDNTCDICEKQFSYKRLLVHHKRTKHNMSSGTKRASIILKDCLVRCLICDIDMKVSEVNEHNQKHIKANMKPRNLYTCLDCGEKFKSRTVLANHIKLVHRLKQLPPKQFEGADLADFCEVVVTKAEPLDEIQSHNGFGEVPDEQEYSPSINLSGFTCTICGKNMPTLISLKRHVNWHSNVGNQLEKKIECFVCKETFRFQCHYKLHMREHYRDTNLDPKLLTCNICNRKSKHLRAAQAHMNYHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESQNTIVGDALPNTVDKSVFDGTHTCLHCGKVCDSENSLKHHMSWHNSKTLLFGARHECPICKITFTNKKRQELHTRTHYEDENGPFKCTICGKGYNDENFFRRHVKGHNFDHQSHKKRIEKLRKDKVKCPICVRYYPDWVKLIRHLRRTHPESKMVKQDPEAPPPRAFACKLCARVFRDERRLRHHEEAHLRKPEFFKCKFCGKKTISLKNHNLHIKGHLTTKHTDNPLKCPQCEERFVKGYDLHYHLRDVHDINETWIAERTEQTLNGPLKEFQCSICLKILASKGNYERHLDYHNSLRCNYCYDYFSSLRFLEGHLTFSCDKKKLVGDTEIYPRKIKCHICYKAFHLQVKLDCHLRTQHDIKVSKEASKSRKDLVCDYCFRVFENIDALTTHKIYHRTVGYFGCIYCKRKFNTLTLYRKHKNHHFAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDNKEWLVMPKESIEEMCPICNKVFFNLHRHLDYHETNRCKKCGEYFYSRTDFDSHLCAIESDDEASCADRDMRPQYEECRFCFKPITRKSSKAKHDHIHKGSGSISCRFCSHKFKTMDAFNIHAFSHRSRKYKTNPLKCRKCGEKFIKYGPFMKHMKEVHNSIQKMHYRATVKAERCVVCGDEFPNLHNHYRAHLQNRCMACLKYFTSSRLFAEHECAKPDADPTKVFTSEQNLTLLINTYVPKDDVDEQKHYGQSIDDHDDRNALQGMADEESQNSNENDHFRLQCPIISDVLSLYQKQEAGGAEDGDAGDAGDAAGADEVIALSDDEVGVLDNDSCPTITIDDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
iTF_01136024;
80% Identity
-