Acra024497.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- RTase
- Assembly
- GCA_947859365.1
- Location
- OX402072.1:5165532-5188485[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00045 0.031 15.4 0.0 1 23 537 560 537 560 0.95 2 13 0.002 0.14 13.3 1.1 1 21 564 584 564 587 0.89 3 13 0.0013 0.091 13.9 2.9 1 23 593 616 593 616 0.97 4 13 0.0005 0.034 15.2 4.5 1 23 622 644 622 644 0.99 5 13 0.00032 0.021 15.8 0.7 2 23 652 674 651 674 0.96 6 13 4.2e-06 0.00029 21.7 0.9 1 23 680 702 680 702 0.99 7 13 8.1e-06 0.00055 20.9 1.7 1 23 708 730 708 730 0.97 8 13 0.013 0.86 10.8 3.1 1 23 735 757 735 757 0.98 9 13 2.6e-05 0.0017 19.3 3.3 1 23 765 787 765 787 0.96 10 13 0.0011 0.071 14.2 4.5 3 23 795 816 793 816 0.95 11 13 7.3 4.9e+02 2.1 0.2 2 17 827 839 827 845 0.68 12 13 0.00022 0.015 16.3 1.3 1 23 850 872 850 872 0.98 13 13 0.0003 0.02 15.9 2.2 1 23 878 901 878 901 0.96
Sequence Information
- Coding Sequence
- ATGGACTGGAACCAGATAACTCTCCTTGAAGACGTTGACGAAATGGTGAGACGCTTTGATGACCTTCTACTGGAACTTTTTGACAGACATGCGCCAGAGAAGACGGTTGTGATGAAGGAGGCACCAAAACCATGGCTCACCAGTAATGTGAGGCTTATGATGAGTCTACGAAACGAAGCGCATTCGAGATTTAAGCGAACTAAGTTGGACTCACATAGGCAGTACTACTTGGATCTAAAGCATCTCGTTATTGCAGCAATCCACAACGAGAAGCGTGCCTTCTTCAAACAACATATCAACGACACAACTGACAGTAAGACTCTCTGGAAAAATTTGAAGCGCACAGTTCTCCCAGAGCCACAAGTGCAAAACGACCTACCTAACCACTTTAATGACCCTGACTTAATAAATCGCCATTTTCTCAACGTTCCAGGGCAGTCGGAAGTGTCTATATCTGACTTGTCTTTTTACGAATTTCACAGACATGGAGACTCGACTTTTAAACTTACAACAACGACATCGAAGACTGTTGCTAAAATTATTACTAGGATAAAATCTACAGCAAAGGGACTGGACTCGATTTCTGTTGACATGCTTCATTTGACACTTTCAAAGACTGCTGACATTTTGACATTTATTGTCAACAAAAGTATTACGACTACAACATTCCCGAAGGACTGGAAAAACGCTCGAGTGACTCCATTACCTAAGAAACCGAATCCAGCTGACCTATCCGACCTTCGTCCTGTAAGTATTCTTCCTTGCACATCGAAGATATTAGAGAGGGTAATTTGTGATCAGCTGTCGGAATACCTGGAGAAAAATAGCATCCTGCCTGAACTACAGTCGGGTTTTCGCAAGGGTCGATCGACTGCTACTGCACTACTCGATGTAGTCGATAACATCTTACAGGCAAGGGATGCTGGCAGAAGTACCATTTTGGTTCTTTTGGATTTCTCTAGGGCTTTTGATTGCATCAATTTGTCCTTGCTATTATCTAAGATGTCATATTACGGATTTGATGCTATGGCGATTAGGTGGTTTGACAGTTACTTGTCCGGCCGGGCACAGGCGGTTGAGTTACGTGGAATGAATGATGGTGCTTTGCGGTCTTCCCTTAGTTCTGTGAACAGAGGAGTGCCGCAGGGTTCGATCTTGGGTCCGCTGCTCTTTATACTTTACAGCGCTGATATCGTTTCTTGTATAAGGAACAGTAGATACCATCTTTACGCCGATGACTTGCAACTGTATGCATCCAGTGTGCCTTCAGATGCAGTCACCGTCGTGAAGAACATTAACGCGGACCTTGATCGGATAAAGCGTCCACCGACCAATGCAAGTTTTTCAATATGCGACAGTTGCATCTCGCAGCTTCGGAGCGCAAGCACATTCAAGAGGATGGTGCAGGACTGCGAAATCAAGTTCGAGGAGTATTGCAAAAACACCAAACAAGTCATTGAGATATCAATTGATGTGAAACCGACGATTGAGAAGAAACCCGCCAAGAAGAAGATTAAACCCAAAGTTAAATCGAAACAAATTAAAATAAAGAAGCCCAAGGATGAAGAATCCTGCGTTGTAAAAGTGAAAACAGAAACCGGCGAAGTGTTTTCCTGCAGAGTCTGCGGTATAACTTACGAGAATTTAGACGAACTGAACGTCCATATAAACGACGAACACTACGTAGGATACAAATGCGCGCACTGCGGCGAAGTCTTCGCCAGAGAAAACAAATTCAAACTACACAACGCACAGATGCATCTCGATACGAAACCTTTCCAATGCCCCCACTGCTACAGAAAAGTAGGTTCAAAACATTCGCTCACAGAACACATAAACTCAATCCACACCAAAGAAAGGCACTACCAATGTGACATCTGTCAAAAGATATTCCACAACAAACATGTCTTGAGAATACACTTACAAAAACACGATGGCACTTTCACGAAATTAATCTGCGATCAATGCGGGGTCTGTAGCAATGACAAGACCAATCTAAGAACCCATATATTAACAGTCCATGAAAAGGTCAGGAATTACGAATGCGAAGTTTGCGGGAAGAAATTCTCCGCCGCAAAACACGTAAGAATACACATGAGATCTCATACCGGAGAGCGGCCCTTCGCTTGTGATCATTGCGACAAAAAATATCCCACTAGGGAATCTTTGAAGGTACACCAAAAAGTGCACGACAATTCGGGGTACAAATGCAAAATGTGCGAACTCGTTTTCCCCACTCGCAGCCAACACATATCCCACTATAAAAGCCATCTGCATCAAATAGAAAAGCAATATAAGTGTCATTTGTGTGAGAAAGCATTTTCAGGGAAATACACTTTGAAACGACACATTTTCGAGCATACCGGTGAAAGGCCCTTTGGCTGCGAAATATGTAAGAAAGACTTCAAACAGAAACATATGCTAAAAAGGCATAATAACAGGTTTCATAATCCTAACAAACCGCCTGTGATTAAAGAGAAATGTAATGTTTGCAACCGTACAGTGCCTAATATAGAAAAGCATATGCTAGCGCATCTAAACAAGCCATATGCTTGTCACCTATGCGAAAAAAAATACCCAGAACAAAACGCGTTAAACAGACATTTGCAGAGACATAGCGGCATAAAACCGCATATGTGTGATTTGTGTGATAAAGGTTTTGTTCAATTAAGAACACTGAAGAAGCATAAGATGAAAGTGCACAAAATGGTGATGAAAACTGAACAAGAGGACCACTATGATAGTTTGGTGAATGCATTCACCATAGCCAATCTTAAGAGGAAAAATTAG
- Protein Sequence
- MDWNQITLLEDVDEMVRRFDDLLLELFDRHAPEKTVVMKEAPKPWLTSNVRLMMSLRNEAHSRFKRTKLDSHRQYYLDLKHLVIAAIHNEKRAFFKQHINDTTDSKTLWKNLKRTVLPEPQVQNDLPNHFNDPDLINRHFLNVPGQSEVSISDLSFYEFHRHGDSTFKLTTTTSKTVAKIITRIKSTAKGLDSISVDMLHLTLSKTADILTFIVNKSITTTTFPKDWKNARVTPLPKKPNPADLSDLRPVSILPCTSKILERVICDQLSEYLEKNSILPELQSGFRKGRSTATALLDVVDNILQARDAGRSTILVLLDFSRAFDCINLSLLLSKMSYYGFDAMAIRWFDSYLSGRAQAVELRGMNDGALRSSLSSVNRGVPQGSILGPLLFILYSADIVSCIRNSRYHLYADDLQLYASSVPSDAVTVVKNINADLDRIKRPPTNASFSICDSCISQLRSASTFKRMVQDCEIKFEEYCKNTKQVIEISIDVKPTIEKKPAKKKIKPKVKSKQIKIKKPKDEESCVVKVKTETGEVFSCRVCGITYENLDELNVHINDEHYVGYKCAHCGEVFARENKFKLHNAQMHLDTKPFQCPHCYRKVGSKHSLTEHINSIHTKERHYQCDICQKIFHNKHVLRIHLQKHDGTFTKLICDQCGVCSNDKTNLRTHILTVHEKVRNYECEVCGKKFSAAKHVRIHMRSHTGERPFACDHCDKKYPTRESLKVHQKVHDNSGYKCKMCELVFPTRSQHISHYKSHLHQIEKQYKCHLCEKAFSGKYTLKRHIFEHTGERPFGCEICKKDFKQKHMLKRHNNRFHNPNKPPVIKEKCNVCNRTVPNIEKHMLAHLNKPYACHLCEKKYPEQNALNRHLQRHSGIKPHMCDLCDKGFVQLRTLKKHKMKVHKMVMKTEQEDHYDSLVNAFTIANLKRKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -