Basic Information

Insect: Archips crataeganus
Gene Symbol: SETMAR
Assembly: GCA_947859365.1
Location: OX402071.1:9630685-9655652[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0045 0.3 12.2 0.4 1 23 156 178 156 178 0.95

2 11 1.5e-05 0.00098 20.0 1.9 1 23 191 213 191 213 0.97

3 11 0.003 0.2 12.8 9.3 1 23 219 241 219 241 0.99

4 11 1.2e-05 0.00078 20.4 7.0 1 23 248 270 248 270 0.99

5 11 1.7e-05 0.0011 19.9 0.2 1 23 276 298 276 298 0.93

6 11 1.3e-06 8.8e-05 23.4 0.0 1 23 304 326 304 326 0.98

7 11 7.8e-06 0.00053 20.9 1.2 1 23 332 355 332 355 0.95

8 11 4.1e-05 0.0028 18.6 1.8 1 23 361 384 361 384 0.96

9 11 2.5e-05 0.0017 19.3 2.3 2 23 391 412 390 412 0.97

10 11 1.4e-05 0.00094 20.1 1.0 1 23 418 440 418 440 0.97

11 11 0.0091 0.61 11.3 0.1 1 21 446 466 446 470 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0045	0.3	12.2	0.4	1	23	156	178	156	178	0.95
2	11	1.5e-05	0.00098	20.0	1.9	1	23	191	213	191	213	0.97
3	11	0.003	0.2	12.8	9.3	1	23	219	241	219	241	0.99
4	11	1.2e-05	0.00078	20.4	7.0	1	23	248	270	248	270	0.99
5	11	1.7e-05	0.0011	19.9	0.2	1	23	276	298	276	298	0.93
6	11	1.3e-06	8.8e-05	23.4	0.0	1	23	304	326	304	326	0.98
7	11	7.8e-06	0.00053	20.9	1.2	1	23	332	355	332	355	0.95
8	11	4.1e-05	0.0028	18.6	1.8	1	23	361	384	361	384	0.96
9	11	2.5e-05	0.0017	19.3	2.3	2	23	391	412	390	412	0.97
10	11	1.4e-05	0.00094	20.1	1.0	1	23	418	440	418	440	0.97
11	11	0.0091	0.61	11.3	0.1	1	21	446	466	446	470	0.92

Sequence Information

Coding Sequence: atggacgaaacatggctccatcattacgacccagaaacgaaactgcagtctatgacatggaaaaggccatcatctccaactccgaagaaattcaaggtgagcccatctgccggtaaggtcatgggctctgttttttgggatggtaaaggggtattaatgattgagtatctcgagcatggagccactattacgggcactttatacgccaaacaaatagcaacattgcgcaatgagatccgcgaaaaacggcgaggtaaactctcgaaagttgtgctgttccaccaggacaatgccccggcacacaagtccgccgttgcaatggctgcaattcgtgatgctgggttcgatatccttaagcatccgccgtattcaccagatctcgctcccaGGTCGCGCGTGGCGCGCTTCACGGGCGACGCGGAGTTCATAATGCGGCACATGCGGCTGACGCACGACGCGCGCGTCTACATTTGCCGCACGTGCGGCGCGGCGCTGCGCCGCCGGGACCACTACACAGCGCACGTCGCGCAACACGCGAAGGATAACGCCGGCCAGGACAAGAGCAAAATACACGAATGCAATATTTGCAACAAGAAATACAGTTCTAAAACCCTGCTAGTGGAACATATGAATCTGCACAACGGCCAACGTCCCTACACGTGCCACATATGCCACAAGAGTTTCGCCTCCAAGTACACACACCAGTCGCATCTGAAGACGCATCTGGACCGACCGCGGCCTTTCAAGTGCGACGAGTGCGGCAAGTGCTTCTTTACGCTGCAGAACCTGAACCAGCACCACAAGACTCACTCGGGGATCAAGGAGTTTGAGTGCAGCGTCTGCGGCAAGGCGTTCGGCACCCAGCACAACCTGGAGATGCACGGGGTGGTGCACTCCGGACAGAAGCCGTTCGTGTGCGGCGTCTGCGGGAAGGCCTTCGCTCGCCGCGCCGAAGTCAAGGACCACATGCGAATACACACTGGCGAGCGCCCGTTCGCGTGCGACGTGTGCGGCGCGACGTTCTCTCAGCGTTCCAATCTACACTCGCACAAGCGCGCGACGCACTACGACGATAAGCGGTATAAGTGCGACCAGTGCCCCAAGCGGTTCAAGCGACGCAGACTCCTCGACTACCACATAAAGGCGTCCCACACTGGGGAGCGTCCCTTGAAGTGCGAGGTGTGCCACGCCACGTTCGTGTATCCCGAGCACTACAAGAAACATATCAGGATACACAGCGGCGAGAAACCGTATGTCTGTGAGGTGTGCGGCAAGTCGTTCAACTCGCGCGACAACCGCAACACGCACCGGTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCCTCGTGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACACGCACATGAACGCCAGCGGGCATCTGGCTGAATCGATTGTGGTGAACCAGCCCCGAGTGACCATACAAAGGATCGCCAACAGCGCGCCCGGAGATAACGTGTATGAATCCACTGAGGAGTTAGAATTAGAAGCGGAAGGCGAGAAGGCCGACGAAAACGAAGGCACTGTGTTCATAGGAGATAAGAAGTATATTCTTCAAAAGGGGCTAAAGGATTCGCTGAACCTGGTTGCTGATACGGAAGATATTTTAACTTATAATCTAGAGGGAGCGTTAAAGACTGAAGGCTACATGGACAATGTCGCTACGGAACAACAGGCAGAGGAAACACAGGTTAGCGTACATGTATACGACCagacgaccagatggcctagtggttag
Protein Sequence: MDETWLHHYDPETKLQSMTWKRPSSPTPKKFKVSPSAGKVMGSVFWDGKGVLMIEYLEHGATITGTLYAKQIATLRNEIREKRRGKLSKVVLFHQDNAPAHKSAVAMAAIRDAGFDILKHPPYSPDLAPRSRVARFTGDAEFIMRHMRLTHDARVYICRTCGAALRRRDHYTAHVAQHAKDNAGQDKSKIHECNICNKKYSSKTLLVEHMNLHNGQRPYTCHICHKSFASKYTHQSHLKTHLDRPRPFKCDECGKCFFTLQNLNQHHKTHSGIKEFECSVCGKAFGTQHNLEMHGVVHSGQKPFVCGVCGKAFARRAEVKDHMRIHTGERPFACDVCGATFSQRSNLHSHKRATHYDDKRYKCDQCPKRFKRRRLLDYHIKASHTGERPLKCEVCHATFVYPEHYKKHIRIHSGEKPYVCEVCGKSFNSRDNRNTHRFVHSDKKPYECLVCGAGYMRKQLLYTHMNASGHLAESIVVNQPRVTIQRIANSAPGDNVYESTEELELEAEGEKADENEGTVFIGDKKYILQKGLKDSLNLVADTEDILTYNLEGALKTEGYMDNVATEQQAEETQVSVHVYDQTTRWPSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -