Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402065.1:5846823-5870484[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00013 0.0086 17.1 6.4 1 23 185 207 185 207 0.98

2 13 4.3e-06 0.00029 21.7 0.2 3 23 221 241 220 241 0.98

3 13 9.2e-05 0.0062 17.5 2.1 2 23 250 271 250 271 0.98

4 13 0.00027 0.018 16.1 1.8 1 23 277 299 277 299 0.98

5 13 1.9e-05 0.0013 19.7 1.1 1 23 305 327 305 327 0.98

6 13 3e-05 0.002 19.1 8.4 2 23 334 355 333 355 0.97

7 13 5.9e-05 0.004 18.1 0.7 1 23 361 383 361 383 0.98

8 13 2.7e-05 0.0019 19.2 1.7 1 23 389 411 389 411 0.98

9 13 0.0006 0.04 15.0 1.1 1 23 417 439 417 439 0.98

10 13 0.0017 0.12 13.5 1.2 1 23 445 467 445 467 0.97

11 13 0.0056 0.38 11.9 0.9 3 23 475 495 473 495 0.97

12 13 0.00095 0.064 14.3 0.4 1 23 501 523 501 523 0.99

13 13 0.014 0.94 10.7 2.7 1 23 576 598 576 598 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00013	0.0086	17.1	6.4	1	23	185	207	185	207	0.98
2	13	4.3e-06	0.00029	21.7	0.2	3	23	221	241	220	241	0.98
3	13	9.2e-05	0.0062	17.5	2.1	2	23	250	271	250	271	0.98
4	13	0.00027	0.018	16.1	1.8	1	23	277	299	277	299	0.98
5	13	1.9e-05	0.0013	19.7	1.1	1	23	305	327	305	327	0.98
6	13	3e-05	0.002	19.1	8.4	2	23	334	355	333	355	0.97
7	13	5.9e-05	0.004	18.1	0.7	1	23	361	383	361	383	0.98
8	13	2.7e-05	0.0019	19.2	1.7	1	23	389	411	389	411	0.98
9	13	0.0006	0.04	15.0	1.1	1	23	417	439	417	439	0.98
10	13	0.0017	0.12	13.5	1.2	1	23	445	467	445	467	0.97
11	13	0.0056	0.38	11.9	0.9	3	23	475	495	473	495	0.97
12	13	0.00095	0.064	14.3	0.4	1	23	501	523	501	523	0.99
13	13	0.014	0.94	10.7	2.7	1	23	576	598	576	598	0.99

Sequence Information

Coding Sequence: ATGGCTGCTGGTAACAAAATGCAGCCTCTTAAATTCGATCAAATATGTCGTGCATGCTTGCAAATAAAGAAAGACATGAGGCCATTATTCGAACAACTCACTGCAACAATGTTGATGGGAATTTCAAAGGTGCAGGTGGCGGTGGGCGACGGGCTGCCCGCGCAGCTGTGCCTGCAGTGCGTGCACCAGATCTCGCGCTGCCACGCCTTCAAGGAGCTCGTGGAGCGCAACGACGGCACGCTGCGGGACCACGCCAAGCTCGCCGCCGAGGAGGCCAGGAAGAATGAGGAGAAAGCACTGGGGCTGGTGCCCGAGTCGGCGCAGTACATCCAGTACATCGAGCTGCCGATGGCGGCGCCCCCGCAACTGCTGGACGGCTTCTTCGAGCCACTGCCGTCCGCGCCCGTCAAGTCTGAGGAGTTCGTTGACCCCTCCAAGGTACAGATTGAATCTTGCACGGCGAACAAGGACGACTCGGCTCTAAACTCTGACGAAGAGAACTACCTCCAGCTGGTGGTATTCCAGACCACGTCGTCAGTGGCGCCGGGCCGCCACGTCTGCAATCTCTGCCACAAAGAGTTCAAGCACGCGCGCTGGTTGAAATTGCACATGCGGTCGCACACCAACTGGATCAAGGCCAATTGCAAGAAGCCTCCCATGTGCCCTATCTGTGAGAGGACTTTCAAGGGTCCTGGCATGTTAAAAATGCACATGCGCACCCACGAGCAGCGCCCGCCGAAGCAGCCGACGTGTTCCGTCTGCCAACGTACCTTCCCCACCAAGACGCTGCTCTACCGCCATCGACAGACGCACTTTGAACAAAAGACCCACCAATGCTCGGTCTGCGAGAAGAGATTTTACAGCGGATACGCTTTACGGTCACACATGGCGAGGCATAGAGGAGAGAGGCCTTACGTGTGCTCCATGTGCTCCAAAAGCTTCTATAACCCCACGGATTTGAAGGTCCACTTCCGGCTGCACACCGGCGAGAAGCCGCTGAAGTGTTCGGAGTGCAACAAGACGTTCCGGCGGCACTCGACGCTGTGCCAGCACATGAAGAAGCACCGCGGCATCCGCAACCACGTGTGCAGCGTCTGCAGCAAGGCCTTCTACGAGGTCTCCAAGCTTAACGCACACATGCGCGTGCACACCGGCGAGCGCCCGTTCGAATGCCAGTTCTGCTCGCGCCGCTTCGCGCAGCAGTCGGCGCTGATCTACCACCGGCGCACGCACACGGGCGAGAAGCCCTACAGCTGCAAACTGTGCTCCGCGCGCTTCACTACATCCTCCGCCAGGAACAACCACATGGTCACGCACACCGGCCACAAGCGGTTCGTGTGCCCGGTGTGCTTCAAGGGCTGCACGTCGCGCGCGGAGCTGCGCGTGCACTCCAGCAAGCACACGGGCGAGAAGCTGTTCGGCTGCGCGCAGTGCTCCGCCAGGTTCAGCTCCGCCTCCTACCTGGCCGTGCATCGCCGCCACCACTCCGGCGAGCGCAAGTACACCTGCGCCGTCTGCGGGAGAGGTTACATGGAATCGGGCTCCTACAAAAAGCATGTCAAAACGCACGAAGCCAAACCAGACAGCGACTCTAACCAAGATACCACAGAGACCACGAACAAGGGCGAAGAGGAGCAGACTCAATCGGTGGAAGACCAGGAGAGCCAGCAAGAGGGCGCGAGCCAAGGTCAGAGCGCGGAGAGCGCGCCGCCCGCCCAGCGCCGGTACAAGTGCGGGCTGTGCGTCAAGACTTACTTGTACCTGCACAGCTTGAAGAAACACATGGCCACTCATATTCAGCAACAACAGCAGCAGCAGCAACAAGTGCAACAACAGCAACAACAGCATCAACAGCAGCAGCAACAACAACAGCAACAACAACAACAACAACAACAACAGCAACAACAACAACAACAACAACAACAACAGCAGCACCAAGTGCAAGTGCAGCAGCAGCAGGTGGCGGTGCAGGCGGTGTCGGCGGCGCAGGTGGCGCAGCTGCAGCAGCAGGTGCTGCAGGTGGGCGGCGTGCAGCAGCTGGCCGTGCCGCTGCACGCGCCGCACCCCCACCCACACGCGCCGCTCGTGCAGGTAACTGGGGGGGGGGGGGGGCAGGTGGCGCAGCTGCAGCAGCTGGCCGTGCCGCTGCACGCGCCGCACCCCCACCCACACGCGCCGCTCGTGCAGGTGGGCGGCGTGCAGCAGCTGGCCGTGCCGCTGCACGCGCCGCACCCCCACCCACACGCGCCGCTCGTGCAGGTAACTGGGGGGGGGGGGGCAGGTGGCGCAGCTGCAGCAGCAGGTGCTGCAGGTGGGCGGCGTGCAGCAGCTGGCCGTGCCGCTGCACGCGCCGCACCCCCACCCACACGCGCCGCTCGTGCAGGTAACTGGGGGGGGGGGGGGCAGGTGGCGCAGCTGCAGCAGCAGGTGCTGCAGGTGGGCGGCGTGCAGCAGCTGGCCGTGCCGCTGCACGCGCCGCACCCCCACCCACACGCGCCGCTCGTGCAGGTAACTGGGGGGGGGGGGGGGGCAGGTGGCGCAGCTGCAGCAGCAGGTGCTGCAGGTGGGCGGCGTGCAGCAGCTGGCCGTGCCGCTGCACGCGCCGCACCCCCACCCACACGCGCCGCTCGTGCAGGTAACTGGGGGGGGGGGGGGGGGCAGGTGCTGCAGGTGGGCGGCGTGCAGCAGCTGGCCGTGCCGCTGCACGCGCCGCACCCCCACCCACACGCGCCGCTCGTGCAGGTAACTGGGGGGGGGGGGGGGCAGGTGCTGCAGGTGGGCGGCGTGCAGCAGCTGGCCGTGCCGCTGCACGCGCCGCACCCCCACCCACACGCGCCGCTCGTGCAGCTGGCCGTGCCGCTGCACGCGCCGCACCCCCACCCACACGCGCCGCTCGTGCAGGTAACTGGGGGGGGGGGGGGGGGGCAGGTGCTGCAGGTGGGCGGCGTGCAGCAGCTGGCCGTGCCGCTGCACGCGCCGCACCCCCACCCACACGCGCCGCTCGTGCAGGTAACTGGGGGGGGGGGGGCAGGTGCTGCAGGTGGGCGGCGTGCAGCAGCTGGCCGTGCCGCTGCACGCGCCGCACCCCCACCCACACGCGCCGCTCGTGCAGGTAACTGGGGGGGGGGGGGGGGGCAGGTGCTGCAGGTGGGCGGCGTGCAGCAGCTGGCCGTGCCGCTGCACGCGCCGCACCCCCACCCACACGCGCCGCTCGTGCAGGCCGGCCACTCTCCGTACCCCGTCATATCGTCAGTCCAGTCACTGCAACTACAGCAAACGCAACAGCAAGTCAATACGCAACAACCTCAACAACTGCAAGTGCAGACCATACAGATCCATCCGCAGCACCAACCCATACAGATTCATACGGTGGGCATGCAGCAAGTACAGCAACAACAGTTACACGTCGCCACGTCCAGCTGCCAGACCATGCTGCCCAATATACTGCAGCTGCAGCCGGGCACGGTGGCGGTGTCGGGGCTGGGCGCGCCCGAGCTGGGCGGCGTGGCGCACCGCATCATCCTGCAGCCGCAGCAGCACCCCTCGCACCCCACCGTCTACACCATACACCACTAG
Protein Sequence: MAAGNKMQPLKFDQICRACLQIKKDMRPLFEQLTATMLMGISKVQVAVGDGLPAQLCLQCVHQISRCHAFKELVERNDGTLRDHAKLAAEEARKNEEKALGLVPESAQYIQYIELPMAAPPQLLDGFFEPLPSAPVKSEEFVDPSKVQIESCTANKDDSALNSDEENYLQLVVFQTTSSVAPGRHVCNLCHKEFKHARWLKLHMRSHTNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHQCSVCEKRFYSGYALRSHMARHRGERPYVCSMCSKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCSVCSKAFYEVSKLNAHMRVHTGERPFECQFCSRRFAQQSALIYHRRTHTGEKPYSCKLCSARFTTSSARNNHMVTHTGHKRFVCPVCFKGCTSRAELRVHSSKHTGEKLFGCAQCSARFSSASYLAVHRRHHSGERKYTCAVCGRGYMESGSYKKHVKTHEAKPDSDSNQDTTETTNKGEEEQTQSVEDQESQQEGASQGQSAESAPPAQRRYKCGLCVKTYLYLHSLKKHMATHIQQQQQQQQQVQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQVQVQQQQVAVQAVSAAQVAQLQQQVLQVGGVQQLAVPLHAPHPHPHAPLVQVTGGGGGQVAQLQQLAVPLHAPHPHPHAPLVQVGGVQQLAVPLHAPHPHPHAPLVQVTGGGGAGGAAAAAGAAGGRRAAAGRAAARAAPPPTRAARAGNWGGGGQVAQLQQQVLQVGGVQQLAVPLHAPHPHPHAPLVQVTGGGGGAGGAAAAAGAAGGRRAAAGRAAARAAPPPTRAARAGNWGGGGGQVLQVGGVQQLAVPLHAPHPHPHAPLVQVTGGGGGQVLQVGGVQQLAVPLHAPHPHPHAPLVQLAVPLHAPHPHPHAPLVQVTGGGGGGQVLQVGGVQQLAVPLHAPHPHPHAPLVQVTGGGGAGAAGGRRAAAGRAAARAAPPPTRAARAGNWGGGGGQVLQVGGVQQLAVPLHAPHPHPHAPLVQAGHSPYPVISSVQSLQLQQTQQQVNTQQPQQLQVQTIQIHPQHQPIQIHTVGMQQVQQQQLHVATSSCQTMLPNILQLQPGTVAVSGLGAPELGGVAHRIILQPQQHPSHPTVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -