Acra005421.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- Znf296
- Assembly
- GCA_947859365.1
- Location
- OX402074.1:10383295-10405371[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.7e-05 0.0012 19.8 0.2 1 23 248 270 248 270 0.98 2 19 0.56 38 5.6 1.0 1 23 277 299 277 299 0.93 3 19 1.7 1.2e+02 4.1 1.6 1 23 303 325 303 325 0.91 4 19 0.00037 0.025 15.6 3.8 1 23 330 353 330 353 0.96 5 19 0.052 3.5 8.9 0.1 3 23 360 381 359 381 0.94 6 19 0.052 3.5 8.9 0.1 3 23 392 413 391 413 0.94 7 19 0.052 3.5 8.9 0.1 3 23 424 445 423 445 0.94 8 19 0.052 3.5 8.9 0.1 3 23 456 477 455 477 0.94 9 19 0.052 3.5 8.9 0.1 3 23 488 509 487 509 0.94 10 19 0.052 3.5 8.9 0.1 3 23 520 541 519 541 0.94 11 19 0.052 3.5 8.9 0.1 3 23 552 573 551 573 0.94 12 19 0.052 3.5 8.9 0.1 3 23 584 605 583 605 0.94 13 19 0.076 5.1 8.4 0.1 2 19 616 633 615 636 0.92 14 19 0.0039 0.27 12.4 0.3 3 23 646 667 645 667 0.94 15 19 0.00021 0.014 16.4 2.5 1 23 672 695 672 695 0.97 16 19 0.00018 0.012 16.6 0.3 3 23 727 747 726 747 0.97 17 19 0.18 12 7.2 0.0 1 16 753 768 753 770 0.87 18 19 0.00034 0.023 15.8 0.1 1 23 836 858 836 858 0.97 19 19 0.00038 0.026 15.6 2.1 1 23 864 887 864 887 0.97
Sequence Information
- Coding Sequence
- ATGAAAACTGTGAAAGAAGAGTCTGCAAAATTGTTGAGTTGTCGGGCTTGCTTGGCTACGGAAGTTCAATTGTATAATATTCATGAAAACAGACTCTCGGAGGCGTTTTCGCACATAACTGGAACTCCTGTTTTGGTACTGGACGGTCTACCGCAACACCTGTGCACGTACTGTTGCGCCGCGCTTCACAAATGCGCGTCATTCCGTGCCAAGTGCCTCCGTGCTCAGCGTTGCTTGGCAAAACCAGTGCCTCATGAGCTAACCACCAGCTACATAAAAACCATAGACCGCCTCTCCCATCAGCTCCTACTAAATCTCACTTTAAAAAAACTCGACGCCACAGACTACACAGACTCCGTACAAGTCGAGGAAATTAAAAAAGAAGAGGATGTAGACAACATATTTCCAGAGTCTGACGATTTGAAAATAGAATATGAAATCAAAGACAAGGATGTTGTAGATGACTTTAGCAATGATGATAATACTTCTGAACATATATTTGTTACAACAAACCCCGTGGCTGATGTCAGGAAAAGGAAAGGGAGAAGAAAAAAGATTGTGACGGAGAAGAGAGCGAAGAGGAAAATCAAGAAGAGAATCTCGGATAATGACTATTTGCCGGACTTTGATTTTGCCAAGTTCGAGAGCAGTTACAGCGTTGAAATTATAGCTTTAACTAAGGAACAACAGCTGGAAGAGATCCAGGCGCGTAAGTCCTCCGACAACTACCAGTACGCGGCGTTCAAGTGCGAGGAGTGCGGGAAAGGGTTCCGTGCTGAGGACGCCTACAATAACCACATGATACGGCACAGCCCGAGCATGGGCGGGCACGCGTGCGAGGTGTGCCTCGTGCGCTTCAAGCGCGCGTCCCGCCGCCAGGAGCACCAGGACTTGCACCGGCTGAAGTTCCTCTGCCGGGAGTGCAGCTTCGTGTCCAGGAACAGGTATCAGGCGAAAAAGCATTTCGAGTGGCACACCGGCAAGATCCACGTCTGTAAGCACTGCGGCGCGAGCTTCACCAAGAGCTCCACGTACCTGTCGCACGTGCGGCTGCAGCACCCCGCCATGAACGTGGCGTGCGACGTCTGCGGCGAGACCTTCGTCGGCCGCCTCGGCTTGCTGCAGCACAAGTCGCGCGCGCACCCCCAGGTACACCCCGCCATGAACGTGGCGTGCGACGTCTGCGGCGAGACCTTCGTCGGCCGCCTCGGCTTGCTGCAGCACAAGTCGCGCGCGCACCCCCAGGTACACCCCGCCATGAACGTGGCGTGCGACGTCTGCGGCGAGACCTTCGTCGGCCGCCTCGGCTTGCTGCAGCACAAGTCGCGCGCGCACCCCCAGGTACACCCCGCCATGAACGTGGCGTGCGACGTCTGCGGCGAGACCTTCGTCGGCCGCCTCGGCTTGCTGCAGCACAAGTCGCGCGCGCACCCCCAGGTACACCCCGCCATGAACGTGGCGTGCGACGTCTGCGGCGAGACCTTCGTCGGCCGCCTCGGCTTGCTGCAGCACAAGTCGCGCGCGCACCCCCAGGTACACCCCGCCATGAACGTGGCGTGCGACGTCTGCGGCGAGACCTTCGTCGGCCGCCTCGGCTTGCTGCAGCACAAGTCGCGCGCGCACCCCCAGGTACACCCCGCCATGAACGTGGCGTGCGACGTCTGCGGCGAGACCTTCGTCGGCCGCCTCGGCTTGCTGCAGCACAAGTCGCGCGCGCACCCCCAGGTACACCCCGCCATGAACGTGGCGTGCGACGTCTGCGGCGAGACCTTCGTCGGCCGCCTCGGCTTGCTGCAGCACAAGTCGCGCGCGCACCCCCAGATCAGTTCGGTGAAGCCGGAATCGAAGTGTGTGTCGTGCGGTCTGCAGTTCTCGAGCCGCGACGCCCTGGGCCGCCACGCCGCGTCCGCGGGCTGCGACCCAGGCTCGAGGCCTTGCTTGATCTGCGGCGAGTCGCTGCGCACTGAGGAGTTGCTACAGAGTCATATCCAGGAGTGCCACAATGCTGACCAGTTCAAGTGCTTGGAGTGTAACAAAACGTTCGCAAGCTCGTCCTCTTATGACGTGCATCACCAACGCGTCCACCTGAACGTGCGCTGGCGCAAGTCGCGCGACAAACGCGCCGCGGACGCGCGGCAGACGCGCCGAGACGAACCGCCCAAGCGGCGAGAGGCCATGTGCGAGATATGCGGCAAGGCTTGCGAGTCGAACGCGGCGCTCGTGTACCACCAGCGCAGCCACACGGGCGAGCGGCCCTATGCGTGTGCGCAGTGCCCCAAGACCTTCACCATGCCGCAAGCGCTCATCGTGAGTACTGCTTACACTCGCCGCCCAAGGTGCCTTTTCCCCTCGACGTGTCTATCCACCCTCGCCGTAACGGCTCGGGTGGCTATATTAGTCTCGGGTGAAATGGCTCGTTTCATGCTCATGTTGTACAATCTACTATTGTCACCAAACGTGTGGTGTGCGCAGACGCATCAGCTGGTGCATTCGGACGAGCGGCCCTACATGTGCGCGGCGTGCCCCAAAGCCTTCAAGCAAAAAGTGGCTCTACAATTacacagcagaGTCCATACAGGCGAGCGGCCTTACAAGTGTTCCATGTGCGACAGCTCCTTCAAACAGGGACCCCATCTGCGCACGCACATCAAGTTAATGCACAACGTTCCCTGCGACAAGCAACGCCGCGGCGTCAAGCGAAAGGCGCTGTGA
- Protein Sequence
- MKTVKEESAKLLSCRACLATEVQLYNIHENRLSEAFSHITGTPVLVLDGLPQHLCTYCCAALHKCASFRAKCLRAQRCLAKPVPHELTTSYIKTIDRLSHQLLLNLTLKKLDATDYTDSVQVEEIKKEEDVDNIFPESDDLKIEYEIKDKDVVDDFSNDDNTSEHIFVTTNPVADVRKRKGRRKKIVTEKRAKRKIKKRISDNDYLPDFDFAKFESSYSVEIIALTKEQQLEEIQARKSSDNYQYAAFKCEECGKGFRAEDAYNNHMIRHSPSMGGHACEVCLVRFKRASRRQEHQDLHRLKFLCRECSFVSRNRYQAKKHFEWHTGKIHVCKHCGASFTKSSTYLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHPQVHPAMNVACDVCGETFVGRLGLLQHKSRAHPQVHPAMNVACDVCGETFVGRLGLLQHKSRAHPQVHPAMNVACDVCGETFVGRLGLLQHKSRAHPQVHPAMNVACDVCGETFVGRLGLLQHKSRAHPQVHPAMNVACDVCGETFVGRLGLLQHKSRAHPQVHPAMNVACDVCGETFVGRLGLLQHKSRAHPQVHPAMNVACDVCGETFVGRLGLLQHKSRAHPQISSVKPESKCVSCGLQFSSRDALGRHAASAGCDPGSRPCLICGESLRTEELLQSHIQECHNADQFKCLECNKTFASSSSYDVHHQRVHLNVRWRKSRDKRAADARQTRRDEPPKRREAMCEICGKACESNAALVYHQRSHTGERPYACAQCPKTFTMPQALIVSTAYTRRPRCLFPSTCLSTLAVTARVAILVSGEMARFMLMLYNLLLSPNVWCAQTHQLVHSDERPYMCAACPKAFKQKVALQLHSRVHTGERPYKCSMCDSSFKQGPHLRTHIKLMHNVPCDKQRRGVKRKAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -