Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402073.1:7768517-7778540[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 38 0.035 2.3 9.4 0.5 1 21 68 88 68 89 0.93

2 38 9.4 6.4e+02 1.8 0.1 3 23 118 138 117 138 0.94

3 38 0.022 1.5 10.1 0.5 2 23 161 182 160 182 0.97

4 38 0.038 2.6 9.3 0.1 1 23 186 208 186 208 0.95

5 38 1.8 1.2e+02 4.0 1.7 1 21 213 233 213 236 0.78

6 38 0.0079 0.53 11.5 0.2 1 23 320 343 320 343 0.96

7 38 0.76 51 5.2 0.3 2 23 370 392 369 392 0.92

8 38 1.2 84 4.5 3.4 1 23 414 436 414 436 0.97

9 38 0.0012 0.079 14.1 1.3 1 23 440 462 440 462 0.96

10 38 0.51 34 5.8 0.1 1 23 522 544 522 544 0.97

11 38 1.8 1.2e+02 4.1 0.3 2 23 570 592 569 592 0.92

12 38 0.048 3.2 9.0 1.8 1 23 614 636 614 636 0.99

13 38 0.16 11 7.3 0.1 1 23 679 701 679 701 0.95

14 38 0.35 23 6.3 7.8 1 23 769 791 769 791 0.95

15 38 0.021 1.4 10.1 0.2 3 23 797 817 796 817 0.95

16 38 0.014 0.92 10.7 0.7 1 23 825 848 825 848 0.95

17 38 0.27 18 6.6 0.4 1 23 854 877 854 877 0.95

18 38 0.19 13 7.1 3.3 1 23 883 906 883 906 0.96

19 38 0.00063 0.042 14.9 0.2 1 23 912 934 912 934 0.96

20 38 8.1e-06 0.00055 20.8 1.8 1 23 940 962 940 962 0.99

21 38 0.11 7.3 7.9 4.4 1 23 1035 1058 1035 1058 0.94

22 38 0.021 1.4 10.1 0.9 3 23 1126 1146 1124 1146 0.96

23 38 6.3e-05 0.0043 18.0 1.0 1 23 1150 1172 1150 1172 0.98

24 38 0.00017 0.011 16.7 0.5 1 23 1177 1200 1177 1200 0.96

25 38 0.0013 0.085 14.0 2.4 1 23 1206 1229 1206 1229 0.98

26 38 0.085 5.8 8.2 1.5 1 23 1236 1259 1236 1259 0.95

27 38 0.0006 0.041 15.0 1.5 1 23 1265 1287 1265 1287 0.97

28 38 4.7 3.2e+02 2.7 0.2 1 10 1293 1302 1293 1307 0.84

29 38 0.05 3.4 8.9 0.1 1 22 1358 1379 1358 1381 0.87

30 38 1.6 1.1e+02 4.2 1.3 1 23 1536 1559 1536 1559 0.94

31 38 8 5.4e+02 2.0 1.0 3 23 1585 1606 1583 1606 0.92

32 38 0.43 29 6.0 0.2 1 23 1630 1652 1630 1652 0.95

33 38 0.00097 0.066 14.3 0.2 1 23 1656 1678 1656 1678 0.98

34 38 0.0017 0.12 13.5 1.3 1 23 1683 1706 1683 1706 0.96

35 38 0.072 4.9 8.4 0.4 2 23 1713 1735 1713 1735 0.92

36 38 0.078 5.3 8.3 6.3 1 23 1742 1765 1742 1765 0.96

37 38 0.00026 0.018 16.1 4.9 2 23 1772 1793 1771 1793 0.96

38 38 8.9e-05 0.006 17.6 0.6 1 23 1799 1821 1799 1821 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	38	0.035	2.3	9.4	0.5	1	21	68	88	68	89	0.93
2	38	9.4	6.4e+02	1.8	0.1	3	23	118	138	117	138	0.94
3	38	0.022	1.5	10.1	0.5	2	23	161	182	160	182	0.97
4	38	0.038	2.6	9.3	0.1	1	23	186	208	186	208	0.95
5	38	1.8	1.2e+02	4.0	1.7	1	21	213	233	213	236	0.78
6	38	0.0079	0.53	11.5	0.2	1	23	320	343	320	343	0.96
7	38	0.76	51	5.2	0.3	2	23	370	392	369	392	0.92
8	38	1.2	84	4.5	3.4	1	23	414	436	414	436	0.97
9	38	0.0012	0.079	14.1	1.3	1	23	440	462	440	462	0.96
10	38	0.51	34	5.8	0.1	1	23	522	544	522	544	0.97
11	38	1.8	1.2e+02	4.1	0.3	2	23	570	592	569	592	0.92
12	38	0.048	3.2	9.0	1.8	1	23	614	636	614	636	0.99
13	38	0.16	11	7.3	0.1	1	23	679	701	679	701	0.95
14	38	0.35	23	6.3	7.8	1	23	769	791	769	791	0.95
15	38	0.021	1.4	10.1	0.2	3	23	797	817	796	817	0.95
16	38	0.014	0.92	10.7	0.7	1	23	825	848	825	848	0.95
17	38	0.27	18	6.6	0.4	1	23	854	877	854	877	0.95
18	38	0.19	13	7.1	3.3	1	23	883	906	883	906	0.96
19	38	0.00063	0.042	14.9	0.2	1	23	912	934	912	934	0.96
20	38	8.1e-06	0.00055	20.8	1.8	1	23	940	962	940	962	0.99
21	38	0.11	7.3	7.9	4.4	1	23	1035	1058	1035	1058	0.94
22	38	0.021	1.4	10.1	0.9	3	23	1126	1146	1124	1146	0.96
23	38	6.3e-05	0.0043	18.0	1.0	1	23	1150	1172	1150	1172	0.98
24	38	0.00017	0.011	16.7	0.5	1	23	1177	1200	1177	1200	0.96
25	38	0.0013	0.085	14.0	2.4	1	23	1206	1229	1206	1229	0.98
26	38	0.085	5.8	8.2	1.5	1	23	1236	1259	1236	1259	0.95
27	38	0.0006	0.041	15.0	1.5	1	23	1265	1287	1265	1287	0.97
28	38	4.7	3.2e+02	2.7	0.2	1	10	1293	1302	1293	1307	0.84
29	38	0.05	3.4	8.9	0.1	1	22	1358	1379	1358	1381	0.87
30	38	1.6	1.1e+02	4.2	1.3	1	23	1536	1559	1536	1559	0.94
31	38	8	5.4e+02	2.0	1.0	3	23	1585	1606	1583	1606	0.92
32	38	0.43	29	6.0	0.2	1	23	1630	1652	1630	1652	0.95
33	38	0.00097	0.066	14.3	0.2	1	23	1656	1678	1656	1678	0.98
34	38	0.0017	0.12	13.5	1.3	1	23	1683	1706	1683	1706	0.96
35	38	0.072	4.9	8.4	0.4	2	23	1713	1735	1713	1735	0.92
36	38	0.078	5.3	8.3	6.3	1	23	1742	1765	1742	1765	0.96
37	38	0.00026	0.018	16.1	4.9	2	23	1772	1793	1771	1793	0.96
38	38	8.9e-05	0.006	17.6	0.6	1	23	1799	1821	1799	1821	0.99

Sequence Information

Coding Sequence: ATGTACGCAGGACGCAGCCAAACCGAACACGAAACTGTGATAAAGGTAGAGGCAACAGATGTACCAATAGAGCATTTGCTCAAGGAAAAGCCGCGGTACCAGAGAAGCGCCCGAGCGGAGGCTAGGCTCGCGACAAAGAAAAACGCGACCGCCATTCTAGAATGCTGGTCCGTCGTTCCCTTCAGATGGAAGAGAAACCAGTTCAAATGCGCCTACTGCGAAGCCAACTTCACAGACTGTAACCTCCTGAGGCTTCACGTAGCAACTTGCTCTTCACAACACAGCGTCAAAGATATCTACAGCAAATTCAAAGAGATGTCCCTCATCAACATCGACGTGACCGCAGCTCTTTGTCGTCTCTGTTCTTTGCCATACACAGATGTGAAACAGATGCGTGAACACGTCATCGATCACGGATACAACTTTGAAACAAGACAACCGGACGGTGTTCTCCCATTCTGCCTTGATAAAGAATCGTGGAGATGCGTGATATGCCAAGAAAAGTTCAATAACTTTTTAAAACTCTATGAACATATGAATGTACATTATCAGCATTATATTTGTGCTACGTGCGGCAAAGGTTACATGACGGCGCCTAGGTTGAGAAAGCATTCAGAAGTGCATGTAAGCGGCTTGTTCCCGTGTAATGAATGCGTTCGGACATTTAAAATGCGAGCTGCGAGGGACCATCACAAGGCGCACGCGCATGCAAAAGCGCCGAGATACGAATGCCCCCAATGTTCCGCTAGTGCGGTAGCGGAGGCAAAAGTAGGAGTTAGACGAGTTAGGAAGTTAAAGGAGAACGTTAGCGCGCGGCAGATGCGCCGGCGCCGCCGCGCGAACAACGAGTTGCCAGAGGAATCCGAGAAGCGCATATCAAAAACTATGATGCGGAGGAACGCTATGACGCTTCTCGAATGTTCCACCGCTTGGGCCTTCCGATGGTTCCACAGCGCCTTTTACTGCTCATACTGTGATGCCAAGTTCGTAGACACCGCCCCGTTGCGTGATCACGTCCAAAGCAATCACTTAAACGTACCGCCCACTAAAAAAATATTTGCAAAATTGACTGAAAATAATATGGTTAAGATTGATATAGGGAATCTCAGCTGCCGGCTATGCAATCATCCTTTAACGGACATAGACGATTTGAAAGATCATTTAGTGTCTCTACACGGGAAGATATTAAACTCTGAATATAGTGATGGTGTTTTACCCTTCAAACTTGACCAAAACGGATTCTTTTGCCAAAAGTGCTTCACCCATTTCATAAGTTTTGCAAAAGCCAACGAGCATATTAATACTCATTACAGAAATCACATTTGCGATGCGTGCGGGAAAGCTTTCGTGTCTAAATCCAGGTTTCGAACCCACGTGCAGTCACATGAAACGGGGAGCTTCCCCTGTGGGGACTGCCTGGCCGTCCCCAAAGCATCAGAGAATTGCGACGCGTCGGTTAAAATAAAATGGAGACGGAAAAGGAAAATGGTGGAGGATAAAGCCAACGCGGCTCTTATTCTAGAATATTCTAATGCTGTTGTGTTTAGATGGCAGCGTGGGAAATTTATGTGCGCATATTGCCCTGCTATCTGTGCCAATGTGAGCGACGTACGCGTCCACTCAAAAATTCATACCAACAGACTCGACGTGTTCGAAAATCAGGAAGTAAGGAACTCGTTTCCCCTCCGAATAGATATAACTGATCTCACATGTGCTATATGCTATCAAAAAGTCAAGGAGCTAAAGGATCTCAAAATGCATTTATCGGAAACACATTCCAAGGAATTCAAATCAGAGTGCAGCGACGGTGTCATACCATTTGTACTAACGGGAAAGGAATACAAATGCGTCCACTGTGATCTGCTTTTCGAAGGGTTCATGAGTCTATTCATTCACATGAATAAGCATTATCAAAGGTTCATCGACCTCAAACTTAAATGGAAACCGAAGCGCAAGTATAATGATCATAGAGACAACGCGGCTATTATAATTGAGTGTTCCAACGTCTGCCCGTTCAGGTGGAAGAGAGGCGCTTTCACCTGCGCGTTCTGTCCAATTTCCTTTGGAGACTTTAGCAGCGTGAGAGAACATGCGCTTGAGCACCCGAACCGGGTCGAGGCAATGCGTCTCGCGCGCCCCCTAGACAACGTCAAAGTAGAAATCAGTGATCTACGCTGCGAACTCTGCCTACTGCTAATCAAAGATGTAGAAACATTGAAGGACCATTTACTCAAAACCCACAATAAACCGATAAGCAACGATCATACCATCGGCGTCACTCCCTTTTTAATTAAAGGAAAGGACTTTCTTTGCACGCACTGCAACGAACACTTTGAACTTTTCTCAAAATTAAACACGCACATGAATCACCATTACCCTAACAACATTTGCTTCCAATGCGGCAAAGCATTTGCCGCTGCTCATAGACTAAAAGCCCATTTAGTTATACACGAATCCTCAAACATTCTGCAATATAAATGCTCGAAATGTGACGATGTTTTTACGACTAGGGCTTTGAAAAACAGTCACATGGCTTTAACACACGGTCCGGAGTACCGTTATAGGTGTCCTTACTGCAACGACTCATTTTTACGGTACGCGGATAGAGCCAAACATTTGAAAGTCGCGCATGATAGGAAAGTAGAATACCCTTGCCATTTATGTACAGCTGTTTTTTCCATGTGCAATCAACGCACGAAGCATATACAACAAGTCCATATAAGGCATAAGCAATTCTTCTGCGCGTTGTGTCCCTACCAATTCGTCACAGCGGCTCAGCTTAGGAACCACATGGTTAAACATATAGGAGAGAGAAAGTACCAATGTCAAGTTTGTAAGAAATCCTACGCGAGAACCAAAACGTTGAGGGAGCACATGCGTATACATAATAATGATAAGCGGTTTGTATGCGAATTTTGTAACAGACGGAAAAGTGAAGAGGGCATTAAACAGGAAGTGATGTCGGATTCGGAGGGCATTTCCACTATCCGCGTCGCTGCTGACCGAGTCGAGGCCGAACAGAAGCGAGCCAGTTTCAGAAATAACATGTCTGCTATCGTAGGCACCTCCACAGCCTACCCGTTTAAATACAGAAGAGGGATTTATCTTTGTTACTACTGTAAACACACATTTATAGAACCAGAAAAGCTCCGACATCACAACCGAGTTTACCATGCCGAACCAAAGCTAATGCTCAAACCTAGAAAATATGAACCATTGAAAGTGGATTTCGTGGACGCCTTGTGCAAGGTCTGCTTTGTGCAAATAGACAGCTACGAAATGCTGAAAACACATCTGCCTGCACACGGTAAATACATAGACATGACACACGGAGAAACGATACTTCCGTACAAACTGGGGACGGAAGAGCAAATATGCCAAATTTGTGGGAAAATGTACGAGGTGTTCTTGACTTTACACAAACACATGAATGACCATTACGAGCATTATATATGTGAAAAATGCGGCAAAAGATTCGCAACGTCTCAACGAATGCTCAACCACATAAAAACGCACGAAGAAGGCGTGTTTCCTTGCAAGCACTGCGGTGAAACCTTTACCACATACGCACCTCTGTACAGCCACATTGCAAGAGTGCACAAGTCTAATAAAAGATACAAATGCCCAATATGCAACGAAAAGTTTATCTCTTACAAACAGAGGATAAAGCATCTGCACACGGTACACGAGCAAAAAACGCCACTGTTTCCTTGCCCTTCATGTGATAGAGTATTTGATTTATGCAGTAAGAGATCAGCGCATATCAGGTTCCAACACTTGCAAGAACGAAACCATGTTTGCAGCGTGTGTGGCATGAAGTTTTTCAGTAACTACGAACTCCAAGAGCACACAATCAAACATGATGGCGACAGAATTTACCAATGCGATATCTGTGATGAGACTTCACCCTTCGAGAGTGACAGTCGGTTAACTGTCCTGAGACCTACGGGATTTAAGCAAAATGAAGAGAATTATAAGAAAAATATTGATGACCTGAAGGCTAGGAAAAAGAACGCCATGATACTACTTGAGTTTACAAAACTGTGTCCATTTAGATGGATGAAGAATTTGTACCTGTGCTTTTACTGTGATCTACAATTCGCCGATCCTGCCTGGCTCAGGGAGCATAATCTGGCTGAACATAAGGTCAGAACTGCCTCACAAATTAAGAACGCTTTATCCAAATTGAAGAAATATGAACTGGTTAAAGTAGACGTATCAGACACAGGATCCGACACTCCAATATTACCGGAAATACAGAAGCAGAAAAGGATCGTGCCTTTGTTCCAAGTGGCATACGACCGCAGCTTGTGTAGACCCCTGGGCACTATATCGGACTTCGATAAAATCGACCTGAAACTCAGATCGTTCACGCAATACTCGAATTACAACCCGACAACTTCTAAGAATTACACTCCGTCCTGTAGTCCATCTCCGATTTCAAATAGCGGTCAAACATCCCCGCCTCCTGTAGGAATCGACTCTAATCCGAGTGTGGAAGTATTTGTCCCGCCGAAAGTCAAAACCCGGCCGGATATTCGTCAAAATGCCTTAACAGTATTCGAGTACTCAACAGTTTACCCGTTCGTTTACGGTAACAACAAATTCAAATGTTTCGTTTGTTCTCAACCTTTTTTGGAAACTGTCGATTTAAGTCGACATATGCATGAAAATCACAGCTTTGCTCCACTGAAGAGACTAGTTAACAATAGAAGAGAAAACGTACTTAAAGTTGACGTGTGTGACATGATGTGCAAGCTTTGTTCGTTGCGGCCCAAAAGCTTGGTGGAACTTAAACACCATTTAAAAGAAGCACATCAAAAACCTATAGACCCCGAACTAAAAGACAATATGATCCCTTTTAAATTGGACGGCCGCGAAGGCACACACAAATGTGTGATTTGCGACGAGGAATTTATAAAAGTACGCATATTAGTCATACATATGAGCGTACATTTTAATAATTACAGTTGTGAAATATGTGGCTCAGGCTTTATGACTTTACGTCTGTTGAAAAAGCATCTTGAAGTCCATGAAAATGGAAACTTTCCCTGTGACCGGTGTAACAAGGTGTTCACGACACCACATAAGCGGTCACTTCATATCAGGGGCGTACATTTGAAGCAGTATCCACGACGATGCCCCATGTGTCCAGAGAGATTTAATTCTAACTATAGGCGTACTATCCATCTTCAAGACGTCCACAACCAGTCGACTCGTGTGCACAAATGCGAGACGTGTGGACGTGCGTTCAATTTGAAATATCATTTGATTTGTCACACGCGCTCGGTTCATTTACAAGAAAGGAACCAGCAATGCGACGTGTGTCACCAAAGGTTCTGCAACAAGGAAACGCTCAAGCGACACATGGTTATACACACAGGTGAAAAGAATTACAAGTGCGAAGTGTGTGGCATGGCTTTCTTACGGCGAAAGAATTTAAAAGACCATCTTAGGCTTCATGACAGTGTTCTTCAAGTATAG
Protein Sequence: MYAGRSQTEHETVIKVEATDVPIEHLLKEKPRYQRSARAEARLATKKNATAILECWSVVPFRWKRNQFKCAYCEANFTDCNLLRLHVATCSSQHSVKDIYSKFKEMSLINIDVTAALCRLCSLPYTDVKQMREHVIDHGYNFETRQPDGVLPFCLDKESWRCVICQEKFNNFLKLYEHMNVHYQHYICATCGKGYMTAPRLRKHSEVHVSGLFPCNECVRTFKMRAARDHHKAHAHAKAPRYECPQCSASAVAEAKVGVRRVRKLKENVSARQMRRRRRANNELPEESEKRISKTMMRRNAMTLLECSTAWAFRWFHSAFYCSYCDAKFVDTAPLRDHVQSNHLNVPPTKKIFAKLTENNMVKIDIGNLSCRLCNHPLTDIDDLKDHLVSLHGKILNSEYSDGVLPFKLDQNGFFCQKCFTHFISFAKANEHINTHYRNHICDACGKAFVSKSRFRTHVQSHETGSFPCGDCLAVPKASENCDASVKIKWRRKRKMVEDKANAALILEYSNAVVFRWQRGKFMCAYCPAICANVSDVRVHSKIHTNRLDVFENQEVRNSFPLRIDITDLTCAICYQKVKELKDLKMHLSETHSKEFKSECSDGVIPFVLTGKEYKCVHCDLLFEGFMSLFIHMNKHYQRFIDLKLKWKPKRKYNDHRDNAAIIIECSNVCPFRWKRGAFTCAFCPISFGDFSSVREHALEHPNRVEAMRLARPLDNVKVEISDLRCELCLLLIKDVETLKDHLLKTHNKPISNDHTIGVTPFLIKGKDFLCTHCNEHFELFSKLNTHMNHHYPNNICFQCGKAFAAAHRLKAHLVIHESSNILQYKCSKCDDVFTTRALKNSHMALTHGPEYRYRCPYCNDSFLRYADRAKHLKVAHDRKVEYPCHLCTAVFSMCNQRTKHIQQVHIRHKQFFCALCPYQFVTAAQLRNHMVKHIGERKYQCQVCKKSYARTKTLREHMRIHNNDKRFVCEFCNRRKSEEGIKQEVMSDSEGISTIRVAADRVEAEQKRASFRNNMSAIVGTSTAYPFKYRRGIYLCYYCKHTFIEPEKLRHHNRVYHAEPKLMLKPRKYEPLKVDFVDALCKVCFVQIDSYEMLKTHLPAHGKYIDMTHGETILPYKLGTEEQICQICGKMYEVFLTLHKHMNDHYEHYICEKCGKRFATSQRMLNHIKTHEEGVFPCKHCGETFTTYAPLYSHIARVHKSNKRYKCPICNEKFISYKQRIKHLHTVHEQKTPLFPCPSCDRVFDLCSKRSAHIRFQHLQERNHVCSVCGMKFFSNYELQEHTIKHDGDRIYQCDICDETSPFESDSRLTVLRPTGFKQNEENYKKNIDDLKARKKNAMILLEFTKLCPFRWMKNLYLCFYCDLQFADPAWLREHNLAEHKVRTASQIKNALSKLKKYELVKVDVSDTGSDTPILPEIQKQKRIVPLFQVAYDRSLCRPLGTISDFDKIDLKLRSFTQYSNYNPTTSKNYTPSCSPSPISNSGQTSPPPVGIDSNPSVEVFVPPKVKTRPDIRQNALTVFEYSTVYPFVYGNNKFKCFVCSQPFLETVDLSRHMHENHSFAPLKRLVNNRRENVLKVDVCDMMCKLCSLRPKSLVELKHHLKEAHQKPIDPELKDNMIPFKLDGREGTHKCVICDEEFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHENGNFPCDRCNKVFTTPHKRSLHIRGVHLKQYPRRCPMCPERFNSNYRRTIHLQDVHNQSTRVHKCETCGRAFNLKYHLICHTRSVHLQERNQQCDVCHQRFCNKETLKRHMVIHTGEKNYKCEVCGMAFLRRKNLKDHLRLHDSVLQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -