Acra000693.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402073.1:4102432-4107317[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.17 11 7.3 0.0 2 23 45 67 44 67 0.93 2 27 0.0052 0.35 12.0 2.2 1 23 89 112 89 112 0.95 3 27 0.0025 0.17 13.0 1.7 1 23 117 140 117 140 0.92 4 27 0.057 3.9 8.7 1.2 1 23 145 168 145 168 0.97 5 27 2.6e-06 0.00018 22.4 1.0 3 23 175 196 174 196 0.97 6 27 3.4e-05 0.0023 18.9 0.4 1 23 203 226 203 226 0.98 7 27 0.057 3.8 8.8 0.1 3 23 234 254 233 254 0.96 8 27 7.4e-05 0.005 17.8 3.5 2 23 261 283 260 283 0.96 9 27 0.053 3.6 8.9 0.3 1 23 329 352 329 352 0.96 10 27 0.014 0.92 10.7 0.0 2 23 383 405 382 405 0.94 11 27 0.021 1.4 10.1 1.0 2 23 428 450 428 450 0.96 12 27 0.0032 0.22 12.7 3.3 1 23 455 478 455 478 0.96 13 27 0.078 5.3 8.3 0.6 1 23 481 504 481 504 0.94 14 27 0.0034 0.23 12.6 1.1 2 23 510 532 509 532 0.91 15 27 0.0005 0.034 15.2 0.6 2 23 540 562 539 562 0.97 16 27 0.0019 0.13 13.4 0.1 2 23 569 590 568 590 0.97 17 27 9.1e-06 0.00061 20.7 1.1 1 23 596 618 596 618 0.90 18 27 0.00012 0.0079 17.2 4.6 1 23 624 647 624 648 0.97 19 27 0.37 25 6.2 5.0 1 23 716 739 716 739 0.95 20 27 0.11 7.7 7.8 0.0 3 23 767 788 765 788 0.95 21 27 0.00032 0.022 15.8 0.4 2 23 839 861 838 861 0.96 22 27 0.032 2.2 9.5 3.2 1 23 864 887 864 887 0.95 23 27 0.098 6.6 8.0 0.3 1 23 893 916 893 916 0.94 24 27 0.012 0.81 10.9 0.5 2 23 924 946 923 946 0.95 25 27 0.34 23 6.3 0.5 1 23 951 973 951 973 0.98 26 27 5.5e-07 3.7e-05 24.5 0.2 1 23 979 1001 979 1001 0.98 27 27 0.027 1.8 9.8 0.5 2 23 1008 1030 1008 1030 0.93
Sequence Information
- Coding Sequence
- ATGGATACAGAAGCTTTACGCGAACATGTAGCTGAAATGCACCAGTTCATAGACCTCGATGCTATACTCTGTGAGCGCATCGCACAACCCTACGATTGCGAAGTACCCGTCAAATTAGACGTCACAGATATATCTTGCAGACTTTGCGATACAACCGTCACTGATGTACCTGACCTGATTGCCCACCTTAATGACGTCCACCAAGCGGGCTACGATACCTCTATAAAAGACTGCCTATTCGCATTTGAGCTCGGCAAAGAAAAACACAAATGTTCAACCTGTGGCTTGGAGTTCAACTATTTCGAGTACCTAATCCGTCACGCACTGAAATACCACGTCGAACAGAATTACAACTGCACGGTTTGCGAGAAATCCTTTCATAGAAAGATGGCTTTAGTGGCTCATTTTAACGACTACCACAAGGAGGATGGGTATCCTTGTGACGTATGCGGTTCTATGTTCATATCGGCATCGAGACGGTACCATCACAAGAAAACTGTCCACTTAACTGATCAGCGGGCCTGTCCGGAATGCGGTAAAGTTTGCAGAAGCAAATATTATTTGAGAAGACATTTGGAGACAGTGCATGGTGCCGAAGAATGTAATTACGAATGTCGATATTGCGGGAGGAAGTTCGCTTTGAAGGGTAATATGTCTGTACACATTAGACGTGTTCATGACCAGGAGAAAAACGTGGCTTGTGCTATTTGTGGGGACGAGTTCTTCAACAATTATCGTCTGGAGAATCACATGGTGAAGCATATGGGAGGACAAGTGTGCACGTGTGATCTGTGTGGGAGGTCATACCAAAGAAAGAAGACGCTACAAACGCACATCAGAAAGGCTCATAGTGCAAAAATCAGTACATTGGAGGATAAAAATAAGAAACTGGAAATCAAACGTAAGCAATTGATAAAACGGCGCAATGTCGAATACGTGCTTCAGTACGGCAACGTGACCCCCTTCCTGTGGTTCAAGGGGAAATACAGGTGCTTCTATTGCACCGAACCAATGAAAAACCCTGAAATGTTACGCGAACACACCGCCAAAGTTCATCAGTTTGCGAATCTAGAGCTTGCTGTGTTCGACAGAACAAAAGACAACCGGAACAAAGACGCTGCCATCAAAATCGACGTCACCGGCATCTCTTGTAAACTATGCCCTAAACCTGTTCCTGACTTAGAACAGCTGATAACACACCTCATCATAGCACACGACGCGGAATACGACGTCAACGTCTCTAACTGCCTCTTACCTTTCCAGTTAGACAAGGACAACCCGACCTGCCCCACCTGCAAAATGAAGTTTGTCTTCTTTGAATACCTCCTACGCCATGCCAATAAGTACCACTTGGCTCACGAGTATATATGTGACGTGTGTGGCACTAGCTTCCAAGGGGAGAACCACTTGAAGATGCACCACAGGTACTACCACAGGGAGTACAAGTGCGACTACTGCGATGTCAGATTGACGACGCTCTCCAAAAAGATAATTCACGAGAAAAACGTCCACATGGCCAACTTGCTCAAGTGCCCTCACTGTCCGGAAACTTTCAAAAGTCCTTACTTCAAAAAACTCCATCTAGCCAACGTGCATGGGGTCGAAGAATTAAAAATCAAGTGCCAGTACTGCACTAAAGTCTTCCCCCAAGAGAGCATCATGTCACGCCACATGCGGAGGGTCCATTTGAGAGAGAGAAACGTAGAATGCGAAGTATGCGGAGAGAAGTTCTTCGGGCCTTACGACGTGAAGCTGCACATGCTGAAGCACAGCGGCGAGAAGTCCTTCATATGCTCCGTCTGCGGAAAGAAGTTTTCTAAAAAGAGCAACTTGAATTCCCACTCTGTGTTACACACCGGCAAGAAAGCTTACAGTTGCACGATATGCAAAAAGGCTTTCGCGTACCACACCAACTTATCTATGCATATGAAAAGTATGCACCACGGTTACGTCACTCTAGAAAAATCACAAGACGTGGGTGAAATAGAAGTCGTTCAGATGGAGTTCGTAAACGATGAATTGGAAGGAACCAAGAGAAAGAAGGAAGAAGAGACATACTTGGAACGACTGGGTACGGTCCGGAAGAACATACTGTACCTGCTTCGCTACGGAAACGTCATGCCCTTCCAATGGAATACCAAAGGCTTCAGTTGCTTCTATTGCTCCAAATCTATGAGGGATTGTGACACTCTCAAGGAGCACACGACATCTAAACACGATTCCGTCGACCTAGAGGCGTTTGTTACAAAAATTGTGTCTAAAAACGTACCGGTTAAAATAGATGTCGCAGGGCTCGCTTGCAAACAATGCTCTGAACCTCTAACCAGTATTGAGGAACTCATAGCTCATATAATCTCTATACATGGAGAACTATACGACAACTCCGCTGGAGTCTGCGTATTCCCCTTCGTTTTGAACAAGGACATGATGCAGTGCGTCCTCTGCGTGAGCAGATACGACAACTTCCCGTCCATGGTCGTCCACATGTACAAAGAGCACATGGCGCACTCTTCCATGTGCCAAATATGCGGTCTAAGCTTTATAGACAAAATCCGCTTGTCCAGACATATTAACAAAAGTCACGTCGGGCATAAATGCAAGAGTTGCGGGAAAATATTCGACGCGATCCACAAATTGGAAAGACACAAGGAACGCATTCACGGGTATGTGAAAACCCATGAGTGTAACCTTTGCAGTGCCGTGTTCGAAAACGATTATCAAGTCAAAGTGCATTTAGGAAAAGTGCATAACGTTGAGAAATATCGCATCAAGTGCGAGTTATGCCCCAAGATATGCACTACTAAAGGCGCGATGCTGATGCACGTTCAGTCCTTGCACTCTGACGTGCGCTACGAATGTGATCTATGCGATTACAAGACACCAATAAAATGGATGATAAAGTTGCATAAACGCAAGCATTTTGGTGAGAGGGATTACGCGTGTAGTATTTGTGGCCGCTTATTTGGGAGATCTAGTAATCTGAGGGCCCATATGAAGGTGCATACGGGAAGTGTCGGCCGCGTTTGCCGCTGGTGCCGGAAAGGGTTCACGGATCTTGAAACGCTGGACAAACATGAGAAGGAGTCCCATTATTACTCGAATTACGTTTAA
- Protein Sequence
- MDTEALREHVAEMHQFIDLDAILCERIAQPYDCEVPVKLDVTDISCRLCDTTVTDVPDLIAHLNDVHQAGYDTSIKDCLFAFELGKEKHKCSTCGLEFNYFEYLIRHALKYHVEQNYNCTVCEKSFHRKMALVAHFNDYHKEDGYPCDVCGSMFISASRRYHHKKTVHLTDQRACPECGKVCRSKYYLRRHLETVHGAEECNYECRYCGRKFALKGNMSVHIRRVHDQEKNVACAICGDEFFNNYRLENHMVKHMGGQVCTCDLCGRSYQRKKTLQTHIRKAHSAKISTLEDKNKKLEIKRKQLIKRRNVEYVLQYGNVTPFLWFKGKYRCFYCTEPMKNPEMLREHTAKVHQFANLELAVFDRTKDNRNKDAAIKIDVTGISCKLCPKPVPDLEQLITHLIIAHDAEYDVNVSNCLLPFQLDKDNPTCPTCKMKFVFFEYLLRHANKYHLAHEYICDVCGTSFQGENHLKMHHRYYHREYKCDYCDVRLTTLSKKIIHEKNVHMANLLKCPHCPETFKSPYFKKLHLANVHGVEELKIKCQYCTKVFPQESIMSRHMRRVHLRERNVECEVCGEKFFGPYDVKLHMLKHSGEKSFICSVCGKKFSKKSNLNSHSVLHTGKKAYSCTICKKAFAYHTNLSMHMKSMHHGYVTLEKSQDVGEIEVVQMEFVNDELEGTKRKKEEETYLERLGTVRKNILYLLRYGNVMPFQWNTKGFSCFYCSKSMRDCDTLKEHTTSKHDSVDLEAFVTKIVSKNVPVKIDVAGLACKQCSEPLTSIEELIAHIISIHGELYDNSAGVCVFPFVLNKDMMQCVLCVSRYDNFPSMVVHMYKEHMAHSSMCQICGLSFIDKIRLSRHINKSHVGHKCKSCGKIFDAIHKLERHKERIHGYVKTHECNLCSAVFENDYQVKVHLGKVHNVEKYRIKCELCPKICTTKGAMLMHVQSLHSDVRYECDLCDYKTPIKWMIKLHKRKHFGERDYACSICGRLFGRSSNLRAHMKVHTGSVGRVCRWCRKGFTDLETLDKHEKESHYYSNYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -