Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402074.1:8938444-8941386[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.0029 0.2 12.8 0.4 2 22 117 137 116 137 0.95

2 28 0.82 55 5.1 0.1 1 20 161 180 161 182 0.83

3 28 0.33 23 6.3 0.3 2 16 212 226 211 228 0.85

4 28 0.002 0.13 13.3 2.2 1 23 239 261 239 261 0.99

5 28 8.9e-05 0.006 17.6 5.0 1 23 267 289 267 289 0.98

6 28 0.0014 0.094 13.8 6.7 1 23 295 317 295 317 0.98

7 28 0.00051 0.035 15.2 4.8 1 23 323 345 323 345 0.96

8 28 0.00047 0.032 15.3 3.1 1 23 351 373 351 373 0.98

9 28 8.6e-05 0.0058 17.6 7.0 1 23 379 401 379 401 0.96

10 28 3.8e-06 0.00026 21.9 3.6 1 23 409 431 409 431 0.98

11 28 0.0018 0.12 13.5 7.4 1 23 440 462 440 462 0.97

12 28 0.0026 0.18 13.0 1.1 1 23 468 490 468 490 0.98

13 28 2.2e-05 0.0015 19.5 1.4 1 23 496 518 496 518 0.98

14 28 5.9e-05 0.004 18.1 6.7 1 23 527 549 527 549 0.98

15 28 0.00077 0.052 14.6 2.0 1 23 555 577 555 577 0.98

16 28 0.00017 0.012 16.7 0.7 2 23 582 603 582 603 0.97

17 28 5.6e-05 0.0038 18.2 3.0 1 23 609 631 609 631 0.98

18 28 0.00021 0.014 16.4 3.6 1 23 640 662 640 662 0.97

19 28 0.0028 0.19 12.9 0.4 1 23 668 690 668 690 0.98

20 28 0.074 5 8.4 3.0 1 23 696 718 696 718 0.97

21 28 0.24 16 6.8 7.1 1 23 724 746 724 746 0.97

22 28 7.7e-06 0.00052 20.9 2.9 1 23 755 777 755 777 0.98

23 28 0.019 1.3 10.2 0.6 1 21 783 803 783 804 0.94

24 28 5.9e-05 0.004 18.1 2.9 1 23 814 836 814 836 0.98

25 28 0.0054 0.37 12.0 1.1 1 23 842 864 842 864 0.98

26 28 0.01 0.7 11.1 3.4 1 21 870 890 870 891 0.93

27 28 0.009 0.61 11.3 2.7 1 21 898 918 898 919 0.93

28 28 0.029 2 9.7 0.1 1 23 948 970 948 970 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.0029	0.2	12.8	0.4	2	22	117	137	116	137	0.95
2	28	0.82	55	5.1	0.1	1	20	161	180	161	182	0.83
3	28	0.33	23	6.3	0.3	2	16	212	226	211	228	0.85
4	28	0.002	0.13	13.3	2.2	1	23	239	261	239	261	0.99
5	28	8.9e-05	0.006	17.6	5.0	1	23	267	289	267	289	0.98
6	28	0.0014	0.094	13.8	6.7	1	23	295	317	295	317	0.98
7	28	0.00051	0.035	15.2	4.8	1	23	323	345	323	345	0.96
8	28	0.00047	0.032	15.3	3.1	1	23	351	373	351	373	0.98
9	28	8.6e-05	0.0058	17.6	7.0	1	23	379	401	379	401	0.96
10	28	3.8e-06	0.00026	21.9	3.6	1	23	409	431	409	431	0.98
11	28	0.0018	0.12	13.5	7.4	1	23	440	462	440	462	0.97
12	28	0.0026	0.18	13.0	1.1	1	23	468	490	468	490	0.98
13	28	2.2e-05	0.0015	19.5	1.4	1	23	496	518	496	518	0.98
14	28	5.9e-05	0.004	18.1	6.7	1	23	527	549	527	549	0.98
15	28	0.00077	0.052	14.6	2.0	1	23	555	577	555	577	0.98
16	28	0.00017	0.012	16.7	0.7	2	23	582	603	582	603	0.97
17	28	5.6e-05	0.0038	18.2	3.0	1	23	609	631	609	631	0.98
18	28	0.00021	0.014	16.4	3.6	1	23	640	662	640	662	0.97
19	28	0.0028	0.19	12.9	0.4	1	23	668	690	668	690	0.98
20	28	0.074	5	8.4	3.0	1	23	696	718	696	718	0.97
21	28	0.24	16	6.8	7.1	1	23	724	746	724	746	0.97
22	28	7.7e-06	0.00052	20.9	2.9	1	23	755	777	755	777	0.98
23	28	0.019	1.3	10.2	0.6	1	21	783	803	783	804	0.94
24	28	5.9e-05	0.004	18.1	2.9	1	23	814	836	814	836	0.98
25	28	0.0054	0.37	12.0	1.1	1	23	842	864	842	864	0.98
26	28	0.01	0.7	11.1	3.4	1	21	870	890	870	891	0.93
27	28	0.009	0.61	11.3	2.7	1	21	898	918	898	919	0.93
28	28	0.029	2	9.7	0.1	1	23	948	970	948	970	0.91

Sequence Information

Coding Sequence: ATGCCTTCACTGGAGTACATTATTTCTGTTCCAGCTGACAGAGCAGAGTCAACCATGGTGAAGCAGGAGTGCAGTGACGCGACAACTGACGCCTTGGAAGACTCCTGCGCCAGTAGCATCTGTTCGGGAGAGTTCCTGCTTGGGGAGCCCGTAGCTCCTGCCAGCTGCAATGTACAGTTCTCTATGTTCAAAGTCAGGCCTTGCACTGTCCGCCTCCAGCGCACCCAAGTGGATAAGTACTCACGCGCCCTGCCACGCCCCAGGTTACATAATAACACCCATGAACCTAACTGTACTAGTGAAGCGAGTCAAACACCCACGAAAACTCATTTGCAAAAGAAAATATTGTCATGTGACAGTTGCAGCGCACAGTTCACACAAAAAGATAAATTAATTAAACATTTAAGAACATGCTCAAGTCAGATTTGGCAAGGATCTAAAAAGCCCTCATCCAGTAGAAGTATCACAAAAGAAAAACCATTCTCTTGCAATCTCTGTCCAAAACAGTTTCTGTCAGAAGCCCGCTTGGCTGTGCACAGACAGGCGTGCCAGCCATTCAACAGGTGTGACGCTTGTATCGGACCATCACAACACCAGCTCATCCACATTCCTTGCACAGAGGAGAAATTTCTCTCTTGTCACACTTGCGGGAAAAAATATGTGGAAAAATATTACTTTGCTGCTGACATGCAGTTTCTTGAGGAAAAGAAACTTTATAAATGTAATGTTTGTGCAGAACAGTTCTCACTAAAACATTCCTTGGCTGAGCACAAGAAGACACACACAAGAGACAGCTCTTACTGCTGTGATACTTGCAGCAAAATATTCAGACACAGGGATTTGTTAATAATGCATATGCGCAGTCACTTGGAGAAGAAGTCTTACCATTGTGGTGTCTGTCAAAAGCAGTTTTCGAAATTATCTCATCTTACTTATCACAAAAGGAGTCATACAAAGGAAAAACCCTACTGCTGCAATATCTGCCAGAAACGGTTTTCATTCTCTTCAAGCTTGAGTCAACATAAACTTTTGCATACAGGAGTGAAGCGGTACAGCTGTGATATCTGTCAGAAAAAGTTTTTGAAATCTTACAACCTTAACCGACATAAACAAAGCCACAATGGAATGTCACCCCACTGCTGTGATGTCTGTCAGAAGCAATTCAAATCTTTGTCGAACTTAACTCGACATAAACGCATGCATACAGGAGAGCGACTGCGACCGTACCACTGCGACGTTTGTCAGAAGCAGTTCACGGAGAAATATAATCTGAATAGGCATATGGAAACCCACAAGTCTGCCATGATGAAAAAAGGTTACTGCTGCAATATTTGTAACAAAAAATGCAGAGATAAGTTTAATTTAGCTATCCATATCCATAGTCACACGGGGGAAAAGCCTTACAGCTGCGATCTCTGTCATAAGCGGTTTGCTGGTACAGGTCCACTTAAACTCCACAAACGGATCCACACAGGGGAGAAACCTTACATCTGCAACGTTTGTCAGAAGCAGTTCATGGAGAAATATACTCTGAATAGGCATATGGAAACCCACAAGTCTGCCATGATGAAAAAAGGTTACTGCTGCAATATTTGTAACAAAAAATGCAGAGATAAGTTTAATTTAACTATCCATATCCGTAGTCACACGGGGGAGAAGCCTTACAGCTGCGATCTCTGTCATAAGCGGTTTGCTGGTACAAGTCTACTTAAACTCCACAAACAGATCCACACAGAACCTAACAGCTGCGATGTCTGTCCTAAGCAATTCATATCTTTGTGGAAATTAAATCGACATAAACGCATGCATATAGGAGAGCGACCTTACCACTGCAACGTTTGTCAGAAGCGGTTCATGGAGAAAACTGCTCTGAATAGGCATATGGAAACCCACAAGTCTGCAATGATGAAAAAAGGTTACTGCTGCGATATTTGTAACAAAAAATTCGCAGACAAGCTTAATTTAGTTAACCATATCCATAATCACATGGGAGAGAAGCCGTACAGCTGCGATGTCTGTCTTAAGCGGTTTGCTGCTACACGTCTACTTAAAGCCCACAAACGAATCCACACGGGGGAGAAACCTCACAGCTGCGATGTCTGTCTTAAGCGGTTTGCTGCGACATGTCTACTTAAAGCCCACAAACGGATCCACACGGGGGAAAAACCTTACAGCTGCAATGTCTGTCAGAAGCAGTTTACGTACAGTTCGACTTGTAGTTATCATAAACGCAAGCATACAGGAGAGAAACCTCTAAAACGGTACAGCTGTGATGTCTGTCAGAAACAATTCATATCTTTGTCGCACTTAACTCGTCATAAACGCATCCACACGGGAGAGCTACCTCACTACTGCAATGTCTGCCAGAGCCGGTTCATGGATACAACTGCTCTGAATAGGCATATGGAATCCCAGAAGTGTGCCATGATGAAAAAACCTTACTGCTGCGATATTTGTAACCAAAAATGTAGTGACAAGTCTGCATTAGTTGTCCATATCCGTAGTCACATGGGGGAGAAGCCTTACAGCTGCGATCTCTGTCATAAGCGGTTTGCTGCTACAGGTCCACTTAAACTTCACAAACGGATCCACACAGGGGAGAAACCTTACAGCTGCAATGTCTGTCAGAAGCAGTTTACGAACAGTTCAAGCAATAGTAGTCATAGATGCAACAATACGCGGGAACAGCGATATTGCTGCGATGTCTGTCAGAAGCAGTTCACGTATAGAAATGCACTTGAGAATCATTTTAAGCAGACATTTTGCAGAATCTGTCAACAACAGTTTGCTTGCCGCGGGTCTGTGAAAACGCACAAACAAAACCAGCACAAAAAGGCACACTTTCTTTGTGCTGTATGCAAAATACAGTTTCCGAATAAGAAGATGCTGGTGCGGCACGCGGGGATTCACCTGTGGGCGCCGGGGGGAGCCAAGACCGATTAA
Protein Sequence: MPSLEYIISVPADRAESTMVKQECSDATTDALEDSCASSICSGEFLLGEPVAPASCNVQFSMFKVRPCTVRLQRTQVDKYSRALPRPRLHNNTHEPNCTSEASQTPTKTHLQKKILSCDSCSAQFTQKDKLIKHLRTCSSQIWQGSKKPSSSRSITKEKPFSCNLCPKQFLSEARLAVHRQACQPFNRCDACIGPSQHQLIHIPCTEEKFLSCHTCGKKYVEKYYFAADMQFLEEKKLYKCNVCAEQFSLKHSLAEHKKTHTRDSSYCCDTCSKIFRHRDLLIMHMRSHLEKKSYHCGVCQKQFSKLSHLTYHKRSHTKEKPYCCNICQKRFSFSSSLSQHKLLHTGVKRYSCDICQKKFLKSYNLNRHKQSHNGMSPHCCDVCQKQFKSLSNLTRHKRMHTGERLRPYHCDVCQKQFTEKYNLNRHMETHKSAMMKKGYCCNICNKKCRDKFNLAIHIHSHTGEKPYSCDLCHKRFAGTGPLKLHKRIHTGEKPYICNVCQKQFMEKYTLNRHMETHKSAMMKKGYCCNICNKKCRDKFNLTIHIRSHTGEKPYSCDLCHKRFAGTSLLKLHKQIHTEPNSCDVCPKQFISLWKLNRHKRMHIGERPYHCNVCQKRFMEKTALNRHMETHKSAMMKKGYCCDICNKKFADKLNLVNHIHNHMGEKPYSCDVCLKRFAATRLLKAHKRIHTGEKPHSCDVCLKRFAATCLLKAHKRIHTGEKPYSCNVCQKQFTYSSTCSYHKRKHTGEKPLKRYSCDVCQKQFISLSHLTRHKRIHTGELPHYCNVCQSRFMDTTALNRHMESQKCAMMKKPYCCDICNQKCSDKSALVVHIRSHMGEKPYSCDLCHKRFAATGPLKLHKRIHTGEKPYSCNVCQKQFTNSSSNSSHRCNNTREQRYCCDVCQKQFTYRNALENHFKQTFCRICQQQFACRGSVKTHKQNQHKKAHFLCAVCKIQFPNKKMLVRHAGIHLWAPGGAKTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -