Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402074.1:9651773-9655262[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3e-05 0.002 19.1 1.0 1 23 119 141 119 141 0.96

2 17 3.3e-05 0.0022 18.9 3.6 1 23 147 169 147 169 0.98

3 17 1.8e-06 0.00012 22.9 2.3 1 23 175 197 175 197 0.97

4 17 2.2e-07 1.5e-05 25.8 1.7 1 23 204 226 204 226 0.98

5 17 0.0059 0.4 11.9 0.8 1 23 231 253 231 253 0.97

6 17 0.0051 0.34 12.1 2.8 1 23 259 281 259 281 0.96

7 17 8.2e-06 0.00055 20.8 2.3 1 23 287 309 287 309 0.98

8 17 2.4e-05 0.0016 19.4 1.2 1 23 315 337 315 337 0.96

9 17 1e-05 0.00068 20.6 0.8 2 23 346 367 345 367 0.96

10 17 7.2e-06 0.00049 21.0 0.7 1 23 372 394 372 394 0.97

11 17 0.0002 0.014 16.5 2.5 1 23 400 422 400 422 0.97

12 17 6.7e-06 0.00045 21.1 2.4 1 23 428 450 428 450 0.97

13 17 0.00064 0.043 14.9 2.2 1 23 458 480 458 480 0.96

14 17 3.9e-05 0.0026 18.7 4.2 1 23 486 508 486 508 0.98

15 17 2.6e-07 1.7e-05 25.6 3.3 1 23 514 536 514 536 0.98

16 17 0.00017 0.011 16.7 1.6 1 23 541 563 541 563 0.96

17 17 0.0005 0.034 15.2 0.0 1 23 569 591 569 591 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3e-05	0.002	19.1	1.0	1	23	119	141	119	141	0.96
2	17	3.3e-05	0.0022	18.9	3.6	1	23	147	169	147	169	0.98
3	17	1.8e-06	0.00012	22.9	2.3	1	23	175	197	175	197	0.97
4	17	2.2e-07	1.5e-05	25.8	1.7	1	23	204	226	204	226	0.98
5	17	0.0059	0.4	11.9	0.8	1	23	231	253	231	253	0.97
6	17	0.0051	0.34	12.1	2.8	1	23	259	281	259	281	0.96
7	17	8.2e-06	0.00055	20.8	2.3	1	23	287	309	287	309	0.98
8	17	2.4e-05	0.0016	19.4	1.2	1	23	315	337	315	337	0.96
9	17	1e-05	0.00068	20.6	0.8	2	23	346	367	345	367	0.96
10	17	7.2e-06	0.00049	21.0	0.7	1	23	372	394	372	394	0.97
11	17	0.0002	0.014	16.5	2.5	1	23	400	422	400	422	0.97
12	17	6.7e-06	0.00045	21.1	2.4	1	23	428	450	428	450	0.97
13	17	0.00064	0.043	14.9	2.2	1	23	458	480	458	480	0.96
14	17	3.9e-05	0.0026	18.7	4.2	1	23	486	508	486	508	0.98
15	17	2.6e-07	1.7e-05	25.6	3.3	1	23	514	536	514	536	0.98
16	17	0.00017	0.011	16.7	1.6	1	23	541	563	541	563	0.96
17	17	0.0005	0.034	15.2	0.0	1	23	569	591	569	591	0.97

Sequence Information

Coding Sequence: ATGTCAGTGAATTCAGTAGAATTTGTTCGCGTAAAAGAAGAACCGAAATGGGAGGACGACGATAGTAATTCCGCTTCCGTCGAATTTAATGACGAGATCAAACTGGAATTAAATGCATCCAAGAAGGTCAAAGCTGAGCCAAAACCCACGGTTAAAGTTGAAGTAGTTAAAGGAGAGTTAACGAACGACGACGATGATGAGTTGCAGATATGCCGTGATATCAAAATAGAGGTGGAAATAGAACAGGATGCAGTGTGCTCTCATCCAGATCATTCCTACAACGAAGCTTTCAATGACTTCCCAGACCCGGCTCAAGCCAAAGCTAGTGGCTCAAAGAAGCAATCTTCGGCAATCTTCCCTTGCTCCACATGCAACAAGCCATTCCGGAACACAACAGATCTAAAACGGCATGAACTACTCCACACCGGAGTGAAACCGTTCACTTGCGAAGTATGCCAAAAACAATTCTCACTCAAACATTACTTGACCAAACATGTTCGAGTACACACGGGCGTCAAACCACATCCTTGCCAACTCTGTGATAAAAAGTTCTCAGTCAAAGAAAGCTTGACCAAACATATGCTGACACATACCGGAGAGATCATACTATATCCATGTAAAATATGTGGCAAACAGTTCAAGGACAAAAACTACTTGACACAGCATCAACGCTTGCACACAGGACAGCAGTTCGCTTGCGATATCTGTAAGAGACTATTCTTATTCAAAAACGGCTTATCTAGACACATGCGTATACATTCCGGTGACAAGCCATTCTCGTGCAAACTGTGCTCCAAACAGTTCAAAGCTAGGACTTATTTACTCAGACACAAGCTTCTGCACACGGGCAAAAAAGCATTCACCTGTGAGGTATGCCAAAAGAAATTCTTCTTCAAAGACAGCTTGGACAGACATATGCGGGTTCACACAGGGGAAAAGCCCCACAGTTGCCCGATTTGCAGGCGCCCATTCTCATTCAAAACCAGTCTAGTACGTCATATGGCATTACATTCCAGAGAAAAACCACCGCCGATTAAATGCGATATCTGCGACAAGGAGTTCACAAACGAAGGACATTTGGAACAACATAAAAGTATCCACGAAAAAAAGGACCACGCTTGTCCAATCTGTAACAAAGAATTTACTGTCAAAGGCAGCATTTCTAGACACATACGCACCCACAACGAGGAGAAACCTTTCTCATGCCAACTCTGCTTCAAGACTTTCAAAGACAAAGCTTACCTGGAATTGCACAAAAAACTGCACACAGGTGAAAAGAAACATAACTGCAAGACATGCGGGCGGCAGTTTGCTTTGAAAGCTAGTTTACGTCGCCATATGCGGATCCACACAGAGGGCGAAAAGAAACCGTTTTCTTGCGACATATGCCAAAAACGGTTCCGGGTCAAAATCTACATGACCAGACATAGAACACTTCACACGACCGAACCGCAATACTCCTGCGACATCTGTCACAAGCAGTTCTCTTTCAAAGCTCATGTCAAGCGTCACATCCTGATACACACGGGTGAAACACCTTATTCCTGCAAAATATGCTCTAAAAGCTTCCGAGACAGATCTAGCTTGCGAAAACATGAACGGCGGCATACGGAAAAGCCGCACGCTTGCCAAATTTGTCAAAAACAGTTTGCTCAAACCGAGGGTTTAGACAAGCATATGAAAAAGCATTCGCAGGATAAACCGTTTCCTTGTGATGTTTGCGGCAAGCCGTTTAAATCGCGGTTGGCGGTGGCGGGACATCAGAAAGTGCATACAAAGAAACCTACCGAGAAGACTGCGGGCGAATATTGTATAGAAATTGATATGAAACAAGATTATAGGGAATCATCGCTTCAGCAGGATAGCAGTGAATCGTCATAA
Protein Sequence: MSVNSVEFVRVKEEPKWEDDDSNSASVEFNDEIKLELNASKKVKAEPKPTVKVEVVKGELTNDDDDELQICRDIKIEVEIEQDAVCSHPDHSYNEAFNDFPDPAQAKASGSKKQSSAIFPCSTCNKPFRNTTDLKRHELLHTGVKPFTCEVCQKQFSLKHYLTKHVRVHTGVKPHPCQLCDKKFSVKESLTKHMLTHTGEIILYPCKICGKQFKDKNYLTQHQRLHTGQQFACDICKRLFLFKNGLSRHMRIHSGDKPFSCKLCSKQFKARTYLLRHKLLHTGKKAFTCEVCQKKFFFKDSLDRHMRVHTGEKPHSCPICRRPFSFKTSLVRHMALHSREKPPPIKCDICDKEFTNEGHLEQHKSIHEKKDHACPICNKEFTVKGSISRHIRTHNEEKPFSCQLCFKTFKDKAYLELHKKLHTGEKKHNCKTCGRQFALKASLRRHMRIHTEGEKKPFSCDICQKRFRVKIYMTRHRTLHTTEPQYSCDICHKQFSFKAHVKRHILIHTGETPYSCKICSKSFRDRSSLRKHERRHTEKPHACQICQKQFAQTEGLDKHMKKHSQDKPFPCDVCGKPFKSRLAVAGHQKVHTKKPTEKTAGEYCIEIDMKQDYRESSLQQDSSESS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -