Acra025120.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402067.1:5988369-5992640[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.1e-08 0.00012 22.4 0.0 1 38 15 52 15 57 0.88
Sequence Information
- Coding Sequence
- ATGGGGCGAGTTAAGACAAGCCGTCGAAAGAGAGGAGCACATACCGAGGATGACATGAAAAAAGCCATCGAGCTGATTCATGCAGGTATGAGTATAAGAAGAGCAAGTAAAGAATGCGGTCTGGCCTACCCAACGGTTCGGCTTTACATAAAAAGATTTAACCAAAATGAGGGTAGACCGATTCGCCTTACTCCAAATTATGAGGTAAACCGGATCTTCACTTTAGAGGAAGAGGAGGAACTAGTAAAATACATCGATAATTGTGCTAAACTATTTTACGGTCTCACCTCAAAAGATTGTCGTCGCGTTGCTTACCAAATGGCCAAAATCAACAATAAAAAAATTCCTCAAGCATGGACTGAAACAGAGTTGGCTGGCATTGAATGGCTTCGGGCATTTAAGAAGAGACATCCTGACATTTCTTTGAGGAAACCTGAGGCATGCAGTTTAGCCAGGGCGACAGCTTTCAATAAACACAATGTGGAATCATTTTTCCGCAACTTAAAAGCTGCTATGGAGAGACATCCAAGCTTTGCAGATGGCAGTCGGGTGTATAATTTAGATGAAACTTCTACCACCACTGTGCAACGACCAGCAAAAGTCTTTGCAAAGAAAGGTAGCAACGTTACAAGTGGTGAGAGAGGGACCCTAGTCACCACTTGCTGCATTATTAGCGCGCTTGGACAAGCAATACCACCTGCTATGGTGTTTCCCAGGAAAGTTTTTAAGCCGCATATGTTGCATGGTGCACCTCCGGGCACGTTAGGTTTGGCTGCAGCTTCTGGCTGGATGAATACCGAATTATTTGTGGAAGTGATGAGGCATTTTATTAAGCATGTATCAGCATCTAAAGACAATCCAGCACTTCTTATAATGGACAACCATGAAAGCCACCTCTCCATTGAAGCGCTGAATCTCGCAAAATCTTCTGGCGTCACGGTATTGACTCTCCATCCGCACACAACGGCAAAGCTTCAACCACTGGATGTTGGTCTTAATGGTCCATTTAAGTCCTATTACAACTCAGCGGTGGATTCATGGCTACTGAGGCATCCTGGGCGACCACTGACCATCTACAATATTGCAGAGTGCGCTGGTCCCGCCTACCAGAAAGCCATGACTCCTGAAAATATCATACACGCCTTTAAAAAATGTGGGTTATTCCCTTACGATGACTGTATTTTCACAGAAGCCGACTTTCTGCCTAGTACTGTAACTGATAGGCCGATTACAGAGCCAGTTAATGAGACTGAAATTATAACACCTGATCCAGACCTACAGGCAGTAAATGAGACTTCACCTGATCCAGCATCATTTACTAGCCAAAGGAGCCACCTCATAACACAACAATCCGTAAAGTCGGCGCACAAACTTAACGACAATGACACCGCAACTATAAATAATAATCTGGACTTTTCAGCTCCATCTGCGGATCTTTATCAAGATGACCCCACTCCTTCTACAAGTAAGTTTGTTCCACCTATGCAATTCATGCCAGCATTGAAAGCACAACCGCGAAATTCGAAAAGACGCAGAGCTCCGGGTAAAAGTATGATCGCGACAGATACTCCTGAGAAGGATGCTCTTGCTGAGAAGAAAAAAAAAGTCGACAAAAAACAAACTAAAAAAGCCAAGCAAGATTTATTTAAAGACAAGAAAGTGACAAAGAAAAAAACCAAAGTTATTGAAAATGAAACTTCTGACGAAGAGGAGTTCATAGCCAGTGGATCGTCATCTGGTGGAGAGGAATTCCTGAGTGGGAGTGAAGACGTGGATGGGGATATAACACTTGACGGTAACTTTATGCCATTAGCTCGAGATCCAAAACAAAATGAATACGTGCTCGTCTTATTTCCTCTAAAAAAGACATCTGTTTATTATGTTGCCAAAATATTAGAAGTTATTGACGACAACGATGAGGATTCAGACTTTTTTTATAAATTGAGAAAGAAACGGCGGGACTACGAGCCTGCGCTACGCCGCCCCCGCCCTCGACGGCGAGACTACGAGCATGCGCTGCGCCGCCCCCAACCTCGCCGGCGGGACTACGAGCATGCGCTGCGCCGCCCCTGA
- Protein Sequence
- MGRVKTSRRKRGAHTEDDMKKAIELIHAGMSIRRASKECGLAYPTVRLYIKRFNQNEGRPIRLTPNYEVNRIFTLEEEEELVKYIDNCAKLFYGLTSKDCRRVAYQMAKINNKKIPQAWTETELAGIEWLRAFKKRHPDISLRKPEACSLARATAFNKHNVESFFRNLKAAMERHPSFADGSRVYNLDETSTTTVQRPAKVFAKKGSNVTSGERGTLVTTCCIISALGQAIPPAMVFPRKVFKPHMLHGAPPGTLGLAAASGWMNTELFVEVMRHFIKHVSASKDNPALLIMDNHESHLSIEALNLAKSSGVTVLTLHPHTTAKLQPLDVGLNGPFKSYYNSAVDSWLLRHPGRPLTIYNIAECAGPAYQKAMTPENIIHAFKKCGLFPYDDCIFTEADFLPSTVTDRPITEPVNETEIITPDPDLQAVNETSPDPASFTSQRSHLITQQSVKSAHKLNDNDTATINNNLDFSAPSADLYQDDPTPSTSKFVPPMQFMPALKAQPRNSKRRRAPGKSMIATDTPEKDALAEKKKKVDKKQTKKAKQDLFKDKKVTKKKTKVIENETSDEEEFIASGSSSGGEEFLSGSEDVDGDITLDGNFMPLARDPKQNEYVLVLFPLKKTSVYYVAKILEVIDDNDEDSDFFYKLRKKRRDYEPALRRPRPRRRDYEHALRRPQPRRRDYEHALRRP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155242; iTF_00155243;
- 90% Identity
- iTF_00155242; iTF_00155243;
- 80% Identity
- -