Acra009035.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402054.1:5534822-5537049[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-12 7.9e-09 35.7 0.0 4 37 112 145 109 151 0.92
Sequence Information
- Coding Sequence
- ATGAGTACTTGTACTGTTTCAGCCAACATTATAACTAACCATTTGGGAAGGCAGAGGTTGATCCTCAATGGTCACGCGTACGCGCCGCACGCGCAGTCCAGGCACACCGGCAAGTTGAGGTGGAGTTACCGGGTCACAGGTATCAGGGAGCGATGGAAGTGCACCAACCATCGATGCGGCGCATTCCTGCTCATAATTGGTGACCAGGTGGTAAAGTTTGTGTCCAGCCACACACACCAGACAAATTCTAAAACGTTTTTGTTTTTAGATTTACTATCGGAAATAAAAATAAGTGATGCTCATAAATATAAGAGGAGATGCTGGGATGAAATAAACATGATTAAGGCGGTAACAGCGGTCCGGGAAAAGAAGATGGGTCTCAAGAAAGCGGTGAAGCTATACTCAGTTCCCAAGACCACGCTAAGAAGGTTTGTGCACAGCACCAAGTCTGCTAACGACGTGGTGCAGAAGTCTCTTGGCAAAAAATCGAAGTCTATCTATATTTTGTATGACTAG
- Protein Sequence
- MSTCTVSANIITNHLGRQRLILNGHAYAPHAQSRHTGKLRWSYRVTGIRERWKCTNHRCGAFLLIIGDQVVKFVSSHTHQTNSKTFLFLDLLSEIKISDAHKYKRRCWDEINMIKAVTAVREKKMGLKKAVKLYSVPKTTLRRFVHSTKSANDVVQKSLGKKSKSIYILYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156181;
- 90% Identity
- iTF_00156181;
- 80% Identity
- -