Adep016581.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759217.1:3240635-3245707[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.014 2.5 10.1 0.3 2 23 83 105 82 105 0.94 2 19 0.79 1.4e+02 4.7 3.5 1 23 126 149 126 149 0.94 3 19 1 1.8e+02 4.3 5.3 1 23 154 177 154 177 0.93 4 19 0.00063 0.11 14.4 3.0 1 23 212 235 212 235 0.96 5 19 4.6 8e+02 2.2 0.3 2 20 242 260 241 261 0.92 6 19 0.014 2.5 10.1 1.4 1 23 270 293 270 293 0.94 7 19 0.011 1.9 10.5 1.7 1 23 299 322 299 322 0.96 8 19 0.0024 0.41 12.6 2.0 1 23 328 351 328 351 0.98 9 19 0.68 1.2e+02 4.9 1.0 1 23 386 409 386 409 0.96 10 19 0.47 81 5.4 7.1 1 23 416 439 416 439 0.97 11 19 0.011 1.9 10.5 3.3 1 23 446 469 446 469 0.96 12 19 0.69 1.2e+02 4.8 0.5 2 20 477 495 477 495 0.94 13 19 0.0058 1 11.4 3.1 2 23 507 529 506 529 0.89 14 19 0.017 2.9 9.9 2.0 2 23 539 561 538 561 0.95 15 19 9.3 1.6e+03 1.3 0.4 2 23 569 591 568 591 0.91 16 19 2.2 3.8e+02 3.3 1.9 2 23 599 623 598 623 0.94 17 19 0.49 85 5.3 2.7 2 23 642 664 641 664 0.96 18 19 1.9 3.3e+02 3.5 3.2 2 23 680 702 679 702 0.96 19 19 7.9e-05 0.014 17.2 1.7 1 23 708 731 708 731 0.96
Sequence Information
- Coding Sequence
- ATGCTCTGCAACTGTGCGCTCCCTGAAGTGAAGGAGGCCTGCAGCTGGTTTCCTAACTGCCAAGTCAGTTTCGCTTCCATATTGTCTGAACGATCGCCAACAATAGTTTTCAACAATAAATCAACCTACAGCGACATTTCTACACAAGTCTCTCAGTTGAGCTCGTGCACTGTCAAGCTTGAACCTGCCCCACTCTCCAGTCTGTCATTGAATCTTGATGAGAGCGAAAGAGGAGGGAAGATACTAGAGTGTTATCATTGTGGGTATGCCTCAGACAGTTTAGGTAGGCTCAGGAGGCACATTGTCCGAGGCCACTTAAACGAGAAGGGGACAGTAGCAACAAAGCGAGTGAGGAGACGCAGGTCAGGGAAGTACCACTATTGCAGAGCCTGTCCGTATAAAGCCGCCACGAAGGGCATGCTGAGAAAACATCGGCATAGGCTCCATCGACCGCTGAAGCACAAGTGTCCTCATTGCAACTACCGGGCCAAGTACAGAACCAGCATCAAGTACCATGTCACCTCGCAGCATCTCAAACTGAAGCCTTTCGCATGCTCCTTGTGTAGTTACCGGAGCGCCACCAGTAGCTGTCTGCGGTGCCACTTCAAGTCAAGACACACCACTGAGAGACCTTACAAGTGTACTTTATGTGATTATAAGTGCGTTCAGGCCGGCACATTGACGAGACATTTCAGGGGTAAACACTTGGGGGAAAAGCCCATCAGTTGTACTTTCTGTTCTTATAAATGTCTTTCCCCAAACGCCCTGAAGGTGCACATAGCTTGCAGACATAATGATAACAAGCCGTTCAAGTGCTCCTTGTGCAAGTATAGCACTCTGACATCATCTCAGCTGAAGAACCATGTCATATTGCAACACACTATGGACAAACCATTCAAATGTCTGTTTTGTTACTACAGTTCAATACGGGCAGTGAAGTTGGAGAAACATATGAAGGACAAACATCCGGAGGTGAAACAGTACAAGTGTTCTTTATGTGACTACAGTTGTTTGCAGCCAGAAGACCTGAAGGCCCATTACAATAAAAACCATGTATTCCAGAAGCCACACAAGTGTTGTCTGTGCTCGTTCGACTGCACGGAGGCGGGCCACCTCAAGACACACTACAGCACTGTCCACCACATTGAGATACCGTACGAGTGCTCTCTGTGCTCCTACACATGTCTAGAAAACGACAAACTGGATATTCATATCAACAAAGTTCATTCAACGGaagaaaaaacatttgtatGTTCCTTTTGTGACTTCTCCTGCAGCCGATTTactcatttgaaatttcatatcagcACAAATCATACAAGAACAGATAAACAGTACATTTGTAAAGTGTGCAATTACAGTTGTAAGAAGTTCATCAATGTCAGAACTCACATTAGGGGAAAACATACTGGTGAAGAGAACCATCGGGAGTGCACATTGTGCAACTTCTCCTGCGAAAGGTCCATTCAGATGGAGATGCACATCTGGGAGAAGCATATTGTGGAGGAAACACAGCTCAAGTGCAACCTCTGCGGATATACCTGCGAGAGGTCGGAAACTTTGAGAACTCACTTCACCGAGAAACACACTGTAGAGAAACCAACCTCGCTTCAGAAGTGCACTTTGTGTGACAATCACTTCAGCAGTCTCACCCTGATGGAGACTCACATTAAAGAGAATCATGCTGATGTAGAAAAACCACTACAATGTGGCCTGTGCAATTTCAGATCTATGGAAGCCCTCCAAATGGAAATACACTTGAAGAAAAAACATAATCTGAAAGGCAAGATGCTCAAGTGTAATAACGAATATTGTAATTTCTATTGTATTGAGTATGTCCAATTACAACTTCACTTAAAGGAAAAACATCCATCGAAAGAGAAAACacagaagaaaaacaaaaagaacAGTTCAGAGGTGATGAAGTGCACTTTGTGTAGTTTCAGGTGTGGGGAAGAAGAGCAGCTGAAGTTACATCTGAGGCAGAGACATGGGGAGGGCGGCGGAGAGGACGAAGTGGTGGAGAAAAAGCAACTGGAGTGTACGATGTGCAAGTTCAGGTGCGAACTGGCAGAGGACATGCGAACCCACTTCAAGACAAAGCACATGAAGAAGAAGCCGCACAACTGTTCTATCTGTGGTTACAACTATACTTACTTCGGCAACTTGATCTACCACATGAGGATCAGGCATCCTGGCGTCGCGCTCGTCTATTAG
- Protein Sequence
- MLCNCALPEVKEACSWFPNCQVSFASILSERSPTIVFNNKSTYSDISTQVSQLSSCTVKLEPAPLSSLSLNLDESERGGKILECYHCGYASDSLGRLRRHIVRGHLNEKGTVATKRVRRRRSGKYHYCRACPYKAATKGMLRKHRHRLHRPLKHKCPHCNYRAKYRTSIKYHVTSQHLKLKPFACSLCSYRSATSSCLRCHFKSRHTTERPYKCTLCDYKCVQAGTLTRHFRGKHLGEKPISCTFCSYKCLSPNALKVHIACRHNDNKPFKCSLCKYSTLTSSQLKNHVILQHTMDKPFKCLFCYYSSIRAVKLEKHMKDKHPEVKQYKCSLCDYSCLQPEDLKAHYNKNHVFQKPHKCCLCSFDCTEAGHLKTHYSTVHHIEIPYECSLCSYTCLENDKLDIHINKVHSTEEKTFVCSFCDFSCSRFTHLKFHISTNHTRTDKQYICKVCNYSCKKFINVRTHIRGKHTGEENHRECTLCNFSCERSIQMEMHIWEKHIVEETQLKCNLCGYTCERSETLRTHFTEKHTVEKPTSLQKCTLCDNHFSSLTLMETHIKENHADVEKPLQCGLCNFRSMEALQMEIHLKKKHNLKGKMLKCNNEYCNFYCIEYVQLQLHLKEKHPSKEKTQKKNKKNSSEVMKCTLCSFRCGEEEQLKLHLRQRHGEGGGEDEVVEKKQLECTMCKFRCELAEDMRTHFKTKHMKKKPHNCSICGYNYTYFGNLIYHMRIRHPGVALVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -