Basic Information

Insect: Aradus depressus
Gene Symbol: -
Assembly: GCA_963662175.1
Location: OY759217.1:51731792-51736707[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.1 1.9e+02 4.2 1.2 2 23 58 79 57 79 0.93

2 14 0.00032 0.055 15.3 2.1 1 23 85 108 85 108 0.97

3 14 0.0054 0.93 11.5 5.2 2 23 115 137 114 137 0.94

4 14 0.28 48 6.1 7.3 2 23 144 166 143 166 0.93

5 14 0.16 27 6.9 3.9 2 23 173 195 172 195 0.93

6 14 0.0054 0.94 11.5 5.9 2 23 202 224 201 224 0.93

7 14 0.015 2.5 10.1 4.9 2 23 231 253 230 253 0.95

8 14 0.0039 0.68 11.9 2.3 2 23 260 282 259 282 0.95

9 14 5.7 9.9e+02 1.9 6.8 2 23 289 311 288 311 0.94

10 14 2.6 4.6e+02 3.0 4.7 2 23 318 340 317 340 0.93

11 14 0.00055 0.095 14.6 5.1 2 23 347 369 346 369 0.95

12 14 0.016 2.8 10.0 4.1 2 23 376 398 375 398 0.95

13 14 0.011 1.9 10.5 0.3 2 23 405 427 404 427 0.95

14 14 0.12 21 7.2 5.2 1 23 433 456 433 456 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.1	1.9e+02	4.2	1.2	2	23	58	79	57	79	0.93
2	14	0.00032	0.055	15.3	2.1	1	23	85	108	85	108	0.97
3	14	0.0054	0.93	11.5	5.2	2	23	115	137	114	137	0.94
4	14	0.28	48	6.1	7.3	2	23	144	166	143	166	0.93
5	14	0.16	27	6.9	3.9	2	23	173	195	172	195	0.93
6	14	0.0054	0.94	11.5	5.9	2	23	202	224	201	224	0.93
7	14	0.015	2.5	10.1	4.9	2	23	231	253	230	253	0.95
8	14	0.0039	0.68	11.9	2.3	2	23	260	282	259	282	0.95
9	14	5.7	9.9e+02	1.9	6.8	2	23	289	311	288	311	0.94
10	14	2.6	4.6e+02	3.0	4.7	2	23	318	340	317	340	0.93
11	14	0.00055	0.095	14.6	5.1	2	23	347	369	346	369	0.95
12	14	0.016	2.8	10.0	4.1	2	23	376	398	375	398	0.95
13	14	0.011	1.9	10.5	0.3	2	23	405	427	404	427	0.95
14	14	0.12	21	7.2	5.2	1	23	433	456	433	456	0.96

Sequence Information

Coding Sequence: atgtttacAGCCGAAGTAGAAACAGTTATCGTGAAGCAGGAGCCTGACATAGATGACATGACTTCATATCCATGGGGAGGACGTAATCCAATAGACATCAAAGAAGAACCAGAGCTGCTCCTGGGATATTCGCCGTCAGCCAGTTTCTGTGATTTGGAGCCGGTGGAAGTGGTGTGCTACCATTGTGGACATGGTTCTCTGAGCTTGGCCAGGCTGAGAGGACACATCCGGACCCACACCTCTCTACATCCATTTAGCTGTCCTTATTGTAATCACAGAGCTGGTCGGCCTTCACATTTGGTACAACATATACAGTCCAAACACACCGGTGAGAAGCCTTTGCACTGCGACCTTTGTGATTATAGATGTGTTCAGCCTTCGACTTTGAAATCTCACATACAGCACAAACATACAAAAGAGAAGCCTTTGCACTGCGACCTTTGTGATTATAGATGTGTTCAGACTTCGAGCTTGAAATCTCACAAACAGCACAAACATACAAAACAGAAGCCTTTGAAATGCGACCTTTGTGAATATAGATGTGTTCAGCCTTCGAGTTTGAAATTTCACATACAGCACAAACATACAAAAGAGAAGCCTTTGCACTGCGACCATTGTGATTATAGATGTGTTCAGCCTTCGAGTTTGAAATCTCACACACTGTACAAACATACAAAAGAGAAGCCTTTGAAGTGCGATCTTTGTGATTACAGATGTGTACAACATAAGTATTTGAAACTTCACATTCAATACAAACATACAAAAGAGAAACCTTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCAGCCTAGAAGTATGAAATCTCACATACAGTACAAACATACAAAAGAGAAGCCTCTCAAGTGCGACCTTTGTGATTACAGGTGTGTTGAACATAAgaatttgaaatttcacataCATTCCAAACATACAAATGACAAGCCTTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCAGCGTAAAATTATGAAATCTCACATACAGCACAAACATACAAAAGAGAAGCCTTTGAAGTGCGACCATTGTGATTATAGATGTGTTCAGTCTTCGAGTTTGAAATATCACATACAGTACAAACATACAAAAGAGAAGCCTTTGAAGTGCGACCTATGTGATTATAGATGTGTTCAGCCTAGAAGTATGAAATCTCACATACAGCACAAACATACTTATGAGGATTCATGGAAGTGTGGCCGTTGTACTTACAGATATGCTACTCTTCCACTTTTGAAACTTCATATACTGTCTAAGCATAGAGTTGAGAAACCATTTAATTGCTATCATTGTACTTTTGTGTCTGTTTCTCGCTGCAGTTTAGTACGTCATATTCAGTCCAAACATATGGTAGAGAACCCGACTGATGCTAATTTGTGCTACACTGTAATTTCTCCGATTTGA
Protein Sequence: MFTAEVETVIVKQEPDIDDMTSYPWGGRNPIDIKEEPELLLGYSPSASFCDLEPVEVVCYHCGHGSLSLARLRGHIRTHTSLHPFSCPYCNHRAGRPSHLVQHIQSKHTGEKPLHCDLCDYRCVQPSTLKSHIQHKHTKEKPLHCDLCDYRCVQTSSLKSHKQHKHTKQKPLKCDLCEYRCVQPSSLKFHIQHKHTKEKPLHCDHCDYRCVQPSSLKSHTLYKHTKEKPLKCDLCDYRCVQHKYLKLHIQYKHTKEKPLKCDLCDYRCVQPRSMKSHIQYKHTKEKPLKCDLCDYRCVEHKNLKFHIHSKHTNDKPLKCDLCDYRCVQRKIMKSHIQHKHTKEKPLKCDHCDYRCVQSSSLKYHIQYKHTKEKPLKCDLCDYRCVQPRSMKSHIQHKHTYEDSWKCGRCTYRYATLPLLKLHILSKHRVEKPFNCYHCTFVSVSRCSLVRHIQSKHMVENPTDANLCYTVISPI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -