Adep043951.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759226.1:25110191-25115411[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.9 1e+03 1.9 0.7 8 23 265 281 264 281 0.91 2 16 0.63 1.1e+02 5.0 8.4 2 23 287 309 286 309 0.96 3 16 0.027 4.7 9.3 4.4 2 23 316 338 315 338 0.94 4 16 0.04 7 8.7 4.5 2 23 345 367 344 367 0.93 5 16 8.6e-05 0.015 17.1 5.9 1 23 373 396 373 396 0.95 6 16 0.0024 0.41 12.6 6.2 1 23 402 425 402 425 0.96 7 16 0.0015 0.27 13.2 3.4 2 23 432 454 431 454 0.95 8 16 0.0027 0.48 12.4 5.9 1 23 460 483 460 483 0.96 9 16 2.6e-06 0.00045 21.9 2.6 1 23 489 512 489 512 0.97 10 16 0.22 38 6.4 4.0 1 23 518 541 518 541 0.95 11 16 0.00011 0.018 16.8 4.3 1 23 547 570 547 570 0.96 12 16 0.1 18 7.5 7.5 2 23 577 599 576 599 0.93 13 16 0.013 2.3 10.2 1.8 5 23 609 628 607 628 0.93 14 16 0.1 18 7.5 7.5 2 23 635 657 634 657 0.93 15 16 0.00022 0.038 15.8 7.9 1 23 692 715 692 715 0.96 16 16 0.0025 0.44 12.5 7.0 1 23 721 744 721 744 0.94
Sequence Information
- Coding Sequence
- ATGTTTGAAGCTGTAGAAGATACAATTACGGTCAAACAGGAGCCGGAGACAGATGATTCCACGTTTAGCAGTACATGGTCAGAAACACACATATACATCAAGCAAGAGCCGGAGCAGATAGCAGAATATTGTCCTTCGACCAGCGCTTGGCCAGGAGCACAAAGATCATTCATCAAAGAAGAGCCAGAGCTCGTAATAGAATATTCACCTCCGGGCAGCCCTTCGAGGGAACGAACACTCAATATGGTAGACCCTGTCCATCATTCCGGACTGAGACTTGCCATTGGAGCTTTCTATACCAGCCCAGTGACTAGCATTGTTAGTGAAGTAGGCGAGCTCCCTCTGAGCGACAGAAGAAAGTACCTCACTCTGAAACACGCTGCTAAATTAGCTTCAAAGTCTGATGCCCATGACGTCTTCACAGCTGTTCGTCCTCCAATAAACAACCAGTTTGTTCCTTTCTGCTCAAGATCACGAAAATACTTGGTACATTTTAATATAGCGACCCGGAACAAAGTGGAAAAAAGAGTGCAGAGCGGGGACTCGCCTTGGATGTGGAGCCTTGTGAACACAAACATGGAACTACACAAACACAAGAAAACAGATACACCGGCACAATACTTCATACAGAAACACAATGACATATGCAGGAGACACATGGACTACACCAGGATCTACACAGACGCATCCAAGATGGAGGAGGGTGTGGGATGTGCAGTAGTCACCCCAGATTCGAACTGGATGTCCAAAATCAATCCAGAATTCATCATTTTCACAGGAGAACTTTTCACACGCAGTTTTGTCAGTTTGGGCAAGACCAGGAGACATATCCGAAATCGCCACACTCACAGCCCATGTAGCTGTGATCATTGTCCTTATAAATGCGTTGGTCATTCGTTGATGAAATTACATATGCAGACTAAACATACGAAGGAGAAGCCGTTGAAGTGCGAACACTGCACTTACAGATGTGTTCAGAAGTCAGTTTTGAAGTACCATATACAGGCCAAACATACGAAGGAGAAGCCGTTGAAGTGCGAACACTGCACTTACAGATGTGTTAAGAAGTCAAATTTGAAGCCCCATATACAGGCCAAACATACGAAGGTGAAACCATTCACGTGTGAACACTGCACTTACAGATGTGTTCAGAAGTCAAATTTGAAGCGTCATATACAGGCCAAACATACGAAGGAGAAGCCATTCCAGTGTGAACACTGCACTTACAGATGTAATCAGAAGTCACTTTTGAAGTACCATATACAGGCCAAACATACGAAGGAGAAACCATTGAAGTGTGAACACTGCACTTACAGTTGTGTAGACATGTCAAGTTTGAAGCTCCATATACGGGCCAAACATACGAATCAGAAACCATTTAAGTGTGAACACTGCACTTATAGATGTGTTCAGACGTCTAATCTGAAGTACCATATACAGGCCAAACATACGAAGGAGAAACCTTTCAAGTGCGAATACTGTGGTTACAGGTTCGTTCAGATGTCACATTTGAAGCTCCATATACAGGTCAAACATACCAAGGAGAAGCCATTCCAGTGTGAACACTGCACTTACAGTTGTGTTCAGATGTCAATTCTGAAGTACCATATACAGGCCAAACATACCAAGGAGAATCCGTTCAAGTGCGATTATTGTAGTTACAGATGTGTTCGGAAGTCAAGTTTGAAGAACCACATACAGGCCAAACATACGAAGGAGAAGCCGTTGAAGTGTGAACACTGTACTTACAGATGTGTTCACATGTCAgatttgaaaaaacataaacaGGCCAAACATACGAATCAGAAACCATTGAAGGGTGAACACTGCACTTACAGATGTGTTCGGAAGTCAAGTTTGAAGAACCACATACAGGCCAAACATACGAAGGAGAAGCCGTTGAAGTGTGAACACTGCACTTACAGATGTGTTCACATGTCAgatttgaaaaaacataaacaGGCCAAACATACGAATCAGAAACCATTGAAGTGTGAACTTTTCACTTACAGATGTGTTCAGATGTCATATCTGAAGTACCATATACAGGCCAAACATACGATGGAGAAACCGTTCAAGTGCGAACACTGCACTTACGGATGTAGTCAGAAGTCACATTTGAAGCGCCATATACAGGCCAAACATAAGAAGGAGAAACCATTCATGTGTGAACACTGCACTTACAGATGTGTTCGGAAGTCAAGTTTGAAGCACCATATACTGGCCAAACATACGAATCAGAAACCATGTGATGTCAGTTGTGTTCTGTGA
- Protein Sequence
- MFEAVEDTITVKQEPETDDSTFSSTWSETHIYIKQEPEQIAEYCPSTSAWPGAQRSFIKEEPELVIEYSPPGSPSRERTLNMVDPVHHSGLRLAIGAFYTSPVTSIVSEVGELPLSDRRKYLTLKHAAKLASKSDAHDVFTAVRPPINNQFVPFCSRSRKYLVHFNIATRNKVEKRVQSGDSPWMWSLVNTNMELHKHKKTDTPAQYFIQKHNDICRRHMDYTRIYTDASKMEEGVGCAVVTPDSNWMSKINPEFIIFTGELFTRSFVSLGKTRRHIRNRHTHSPCSCDHCPYKCVGHSLMKLHMQTKHTKEKPLKCEHCTYRCVQKSVLKYHIQAKHTKEKPLKCEHCTYRCVKKSNLKPHIQAKHTKVKPFTCEHCTYRCVQKSNLKRHIQAKHTKEKPFQCEHCTYRCNQKSLLKYHIQAKHTKEKPLKCEHCTYSCVDMSSLKLHIRAKHTNQKPFKCEHCTYRCVQTSNLKYHIQAKHTKEKPFKCEYCGYRFVQMSHLKLHIQVKHTKEKPFQCEHCTYSCVQMSILKYHIQAKHTKENPFKCDYCSYRCVRKSSLKNHIQAKHTKEKPLKCEHCTYRCVHMSDLKKHKQAKHTNQKPLKGEHCTYRCVRKSSLKNHIQAKHTKEKPLKCEHCTYRCVHMSDLKKHKQAKHTNQKPLKCELFTYRCVQMSYLKYHIQAKHTMEKPFKCEHCTYGCSQKSHLKRHIQAKHKKEKPFMCEHCTYRCVRKSSLKHHILAKHTNQKPCDVSCVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -