Adep019733.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- RTase
- Assembly
- GCA_963662175.1
- Location
- OY759217.1:51780149-51792764[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.082 14 7.7 1.0 2 23 651 673 650 673 0.96 2 20 0.032 5.6 9.0 0.5 2 23 682 704 681 704 0.95 3 20 0.00043 0.074 14.9 7.8 2 23 711 733 710 733 0.95 4 20 0.00057 0.098 14.5 2.6 2 23 740 762 739 762 0.94 5 20 0.019 3.3 9.7 3.5 2 22 769 789 768 789 0.93 6 20 0.23 40 6.3 2.4 1 23 794 817 794 817 0.96 7 20 0.12 21 7.2 5.6 2 23 824 846 823 846 0.93 8 20 0.00083 0.14 14.0 2.0 2 23 853 875 852 875 0.95 9 20 0.00022 0.038 15.9 4.9 1 23 881 904 881 904 0.96 10 20 4.8 8.3e+02 2.2 4.2 2 23 911 933 910 933 0.95 11 20 0.001 0.18 13.8 2.2 2 23 940 962 939 962 0.97 12 20 0.0071 1.2 11.1 4.3 2 21 969 988 968 989 0.92 13 20 0.09 16 7.6 4.1 2 23 995 1017 994 1017 0.94 14 20 0.018 3.1 9.8 5.0 2 23 1024 1046 1023 1046 0.94 15 20 0.0073 1.3 11.0 2.5 2 20 1053 1071 1052 1075 0.94 16 20 0.0086 1.5 10.8 5.5 2 23 1082 1104 1081 1104 0.94 17 20 0.00082 0.14 14.0 2.5 2 23 1111 1133 1110 1133 0.95 18 20 0.022 3.8 9.6 1.8 2 23 1140 1162 1139 1162 0.94 19 20 0.92 1.6e+02 4.4 0.5 2 23 1169 1191 1168 1191 0.95 20 20 0.58 1e+02 5.1 5.4 1 23 1197 1220 1197 1220 0.96
Sequence Information
- Coding Sequence
- ATGTTTATGAAGCAGGAGCCTGACATAGATGACATGACTTCATATCCATGGGGAGGACGTAATACAATAGACATCAAAGAAGAACCAGAGCTGCTCCTGGGATATTCACCGTCAGCCAGTCTCTCAACCTTCTACCCTCATCAAGACAGATACTTACCAGACATTCTCGACATTACCATTTCCAAAGACATCAACACACCCATCCTCCACACACCAATACCTGACCTAGACTCTGACCATTTACCTGTACTCATCACGCTACACGACAAGACACAGTACACCCCCCTCCTTCCACGGCTCATTAacgggaagatcgactgggacACATTTCGCCAGGAACTCGACAATAGTATAACTATATCTTCAGTGTACAGGACTCCTTCGGACATTGAGGACGCAATAGGACAATTTACTACCGCAGTTCATACAAGTGTCCAGAAAGCCACTTACAGACTGAACAAAGACCCTAGACAACGCGCACATTATAGTACACCCACTTACATCTTAAACTTAATAACGGACAAAATTAGACTTAGACGCCAGTGGCAGAGAACTCGTGACCCTAACATTAAAAGACAGGTAAAACGACTGACTAGACAAATCAAGTGGGAACTGGATTATTTTCGGATCGAAAAGTATAAGAAGTTCTTGGAAGAAATGTCCCCAGGCGATCCAAACCTGTGGAAGGAGACCAGACGTGTACTGCGACAGACCGTACCTATCCCACCTCTTAGACACAACGGAAAGACAGCTCTGACGGACGAAGACAAATGTACAGTACTGGCAACTCACTTCGAACACACTTTCAATACCACTCCCACCAACACCTATCATACCGCTGTCATCACACATTACAAGAATAACCCCATACACACAGCCGAGTTACCTCTAAAATACACAACCCCAACAGAACTCTCaggatttattacaaaattgccATCCCGAAAGGCGCCGGGCGAGGATCTCATTCCCAACATTGTTCTTAAGAATCTTTCCATAAGGGCGCTTGCTTTCCTCACCAGCGTCTTCAACAGCTGTCTCCGTCATGGTTACTTCCCTGCTCAATGGAAGAATGTTGTCGTGATAGTGACACACAAGCCAGGTAAACCGAAGGACGAGCCAGGAAGTTATCGGCCAATTAGTTTATTAAACAGTTTCTCTAAATTACTAGAAAAGGTACTATACACCAGGATACTAGCCTTTCTCCACGATAGCGACCTCCTTCCGCCCCATCAATTCGGTTTTCGCCCTAAGCACTCTACGGTCCATCAATTGCAAAGAGTGACTGAAAAAATCATCCGAGGTTTCGAAGGAAAACAGTACTCAGCAGCCCTTTTTCTGGACGCAAATTCTGCCTTCGATACGGTATGGCACGAAGGCTTAATTTACAAATTCCAGAGAACAGGATCTCCTTGGTACCTTTGCAAAATTATAGAAAGTTTCCTGGCAAACAGAACCTCCCAGATGAGAATAGCCTCAAGTGTTAACACCCGCAACACACTGTTGGCCACCTATGCTGATGATACTCTGCTTGTATCTCAGCATCCAGATGTGTCATCAGCAGTGGAAGCTCTACAAAGTGATGTTCATGTCGTGATGGACTGGTTCAATAGGTGGAATCTTGGAATAAACACTGCTAAAACGATGGccaaagttttcactcttcgaAGGACTAACTTAGACACACTCACACAGATTCGAATCAACAACGACCTCATACCCTGGACACCTACTGATGTGACAATCAACTGCACTCTAGTGTCGGACTCCATGCAGCCTCCTCGCATCATTCACCAAaccatcctgccacctcagCTTTGGCCTTCGACGCGTCTTTCTCGGGATCTCGCGTTTGCCCATCCTGgccacatgtccggcccacctgagGCTTACCAGCCTGATGACCTTTACAACGTCTGGCTCCTGAGTGGTTTGGAGCCAGTGGAAGTGGTGTGCTACCATTGTGGACATGGTTCTGTGAGCTTGGCCAGGCTGAGAGGACACATCCGGACCAACCACACCCACACCTCTCTACTTCCACTTAGCTGTCCTTATTGTAATCACAGAGCTGCTCAGGGTTCATATTTGGTACAACATATACAGTCTAAACACACCGGTGAGAAGCCGCTGAAGTGCAACCATTGTGATTATAGATGTGTTCAGCCTTCGCATTTGAAAAGACACATACAGCACATACATACAAAAGAGAAGCCTTTGCCCTGCGACCATTGTGATTATAGATGTGTTCAGCCTTCGGCTTTGAAATCTCACATACAGCACATACATACAAAAGAGAAGCCTTTGCACTGCGACCATTGTGATTATAGATGTGTTCAGCCTTGGAGTTTGAAATCTCACATACATACAAAAGAGAAGCCTTTCATGTGCGACCTTTGTGATTATAGATGTGTTGAGGCTAGAAGTATGAAATATCACATACAGTACAAGCATACAAAAGAGAAGCCATGGAAATGTAACCAATGTGATTATAGATGTGTTCAACGTAATTATTTGAAAGTTCATAAACTACACAAACATACAAAAGAGAAGCCTTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCAGGCTTCGACTTTGAAATCTCATATACAGTACAAACATACAAAAGAGAAGCCTTTCAGGTGCGACCATTGTGATTATAGATGTGTTCAACCTTCGAGTTTGAAATCTCACATACAGTACAAACATAGAAAAGAGAAGCCTCTCAGGTGCGACCTTTGTGATTACAGATGTGTTGAACATAAGgatttgaaatttcacataCAATCCAAACATACAAATGTCAAGCCTTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCGGCCTAGAAGTATGAAATCTCACATACGACGCGAACATACAAAAGAGAAGCCTTTGAAGTGCGACCATTGTGATTATAGATGTGTTCAGCCTTCGAGTTTGAAATCTCACAAACATACAAAACAGAAGCCTTTGAAATGCGACCTTTGTGATTATAGATGTGTTCAGCCTAGAAGTATGAAATCTCACATACACTACAAACATACAAAAGAGAAGCCGTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCAGCCTTCGAGTTTGAGATATCACATACATCACAACCATACAAAAGAGAAGCCCTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCATCCTTCGAGTTTGAAATCTCACATACCTTACAAACATACAAATGACAAGCCTTTGATGTGCGGCCTTTGTGATTATAGATGTGTTCACTCTTCGAATTTGAAATCTCACATACAGCACAAACATACAAAAGAGAAGCCGCTGAAGTGCGACTATTGTGATTATAGATGTGTTCAGCCTTTTAGTTTGAAATCTCACATACAGTACAAACATACAAAAGAGAAGCCGCTGAGGTGCGACTATTGTGATTACAGGTGTGTTCAACGTTCGATATTGAATAGTCATATAAAGGCCAAACATACAAATGAGGATTCATGGAAGTGTGGCCGTTGTACTTACAGCTGTGCTGCTCTTCCACTTTTGAAACTTCATATACTGTCTAAGCATAGAGTTGAGAAACCATATAATTGCTATCATTGTACTTTTGTATCTGTTTCTCGCTGCAGTTTAGTACGTCATATTCAGTACAAACATATGGTAGAGAACCCGACTGATGCTAATTCGTGCTACACTGTAACTTCTCCGATTTga
- Protein Sequence
- MFMKQEPDIDDMTSYPWGGRNTIDIKEEPELLLGYSPSASLSTFYPHQDRYLPDILDITISKDINTPILHTPIPDLDSDHLPVLITLHDKTQYTPLLPRLINGKIDWDTFRQELDNSITISSVYRTPSDIEDAIGQFTTAVHTSVQKATYRLNKDPRQRAHYSTPTYILNLITDKIRLRRQWQRTRDPNIKRQVKRLTRQIKWELDYFRIEKYKKFLEEMSPGDPNLWKETRRVLRQTVPIPPLRHNGKTALTDEDKCTVLATHFEHTFNTTPTNTYHTAVITHYKNNPIHTAELPLKYTTPTELSGFITKLPSRKAPGEDLIPNIVLKNLSIRALAFLTSVFNSCLRHGYFPAQWKNVVVIVTHKPGKPKDEPGSYRPISLLNSFSKLLEKVLYTRILAFLHDSDLLPPHQFGFRPKHSTVHQLQRVTEKIIRGFEGKQYSAALFLDANSAFDTVWHEGLIYKFQRTGSPWYLCKIIESFLANRTSQMRIASSVNTRNTLLATYADDTLLVSQHPDVSSAVEALQSDVHVVMDWFNRWNLGINTAKTMAKVFTLRRTNLDTLTQIRINNDLIPWTPTDVTINCTLVSDSMQPPRIIHQTILPPQLWPSTRLSRDLAFAHPGHMSGPPEAYQPDDLYNVWLLSGLEPVEVVCYHCGHGSVSLARLRGHIRTNHTHTSLLPLSCPYCNHRAAQGSYLVQHIQSKHTGEKPLKCNHCDYRCVQPSHLKRHIQHIHTKEKPLPCDHCDYRCVQPSALKSHIQHIHTKEKPLHCDHCDYRCVQPWSLKSHIHTKEKPFMCDLCDYRCVEARSMKYHIQYKHTKEKPWKCNQCDYRCVQRNYLKVHKLHKHTKEKPLKCDLCDYRCVQASTLKSHIQYKHTKEKPFRCDHCDYRCVQPSSLKSHIQYKHRKEKPLRCDLCDYRCVEHKDLKFHIQSKHTNVKPLKCDLCDYRCVRPRSMKSHIRREHTKEKPLKCDHCDYRCVQPSSLKSHKHTKQKPLKCDLCDYRCVQPRSMKSHIHYKHTKEKPLKCDLCDYRCVQPSSLRYHIHHNHTKEKPLKCDLCDYRCVHPSSLKSHIPYKHTNDKPLMCGLCDYRCVHSSNLKSHIQHKHTKEKPLKCDYCDYRCVQPFSLKSHIQYKHTKEKPLRCDYCDYRCVQRSILNSHIKAKHTNEDSWKCGRCTYSCAALPLLKLHILSKHRVEKPYNCYHCTFVSVSRCSLVRHIQYKHMVENPTDANSCYTVTSPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -