Adep019709.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759217.1:51653072-51658196[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0011 0.19 13.7 1.1 2 23 150 172 149 172 0.97 2 15 0.01 1.8 10.6 0.7 2 23 181 203 180 203 0.95 3 15 0.0042 0.74 11.8 5.1 2 23 210 232 209 232 0.94 4 15 0.011 1.8 10.5 4.3 1 23 238 261 238 261 0.96 5 15 0.035 6.1 8.9 8.1 2 23 268 290 267 290 0.94 6 15 0.00052 0.09 14.7 3.6 2 23 297 319 296 319 0.95 7 15 0.0024 0.42 12.6 5.6 2 23 326 348 325 348 0.95 8 15 0.0024 0.42 12.6 5.6 2 23 355 377 354 377 0.95 9 15 1.4 2.5e+02 3.8 2.0 2 23 397 418 396 418 0.95 10 15 0.00045 0.077 14.9 2.1 1 23 424 447 424 447 0.97 11 15 0.89 1.5e+02 4.5 6.6 2 23 454 476 453 476 0.94 12 15 0.0001 0.017 16.9 4.9 1 23 482 505 482 505 0.96 13 15 0.0005 0.086 14.7 4.4 2 23 512 534 511 534 0.95 14 15 0.00052 0.09 14.7 3.6 2 23 541 563 540 563 0.95 15 15 0.0041 0.71 11.8 6.6 2 23 570 592 569 592 0.95
Sequence Information
- Coding Sequence
- ATGGCGTCTGACGTACGAAGATACGTGGAGGGCTGTGGGGCGTGTGCTAAAAGGAAGGGTCCGTTTGGGAGACAGGCCCCCTTGGGAGAGTCAATCCAAACTCAGGGGCCCATGGATTGGGTAGTGCACATCGATAGGATGAAGACTTACAAAGGACGGTTAGAGGCAGGTGGCCGAGGGGGGCGCGCCATGTCAGACCAGGGCGGGCCATGCCAGGTAGCATCCAGGGGCGCGAGAGGACAACGAGGGGGTTGCAGAATGGAGACCCATCCCACCTTTAGCTCGGGACGGGAGCCCCCTGGGGCCGAACGAGAACCTAACGCAGGGATCCGGGTCACCAGGCTAAGTGGTACGACCGCTGGAACAGGTGGCGGGCGCCACCGAGAGAGGCCTCGGAGGATACGGAGGACTCGGAGGGGGATCCGTGGTTTGGAGCCACTGGAAGTGGTGTGCTACCATTGTGGACATGGTTTTGTGAGCTTGGCCAGGCTGAGAGGACACATCCGGACCAACCACACCCACACCTCTCTACATCCACTTAGCTGTCCTTATTGTAATCACAGAGCTGGTCGGCCTTCACGTTTGGTACAACATATACAGTCCAAACACACCGGTGAGAAGCCTTTGCACTGCGACCTTTGTGATTATAGATGTGTTCATCCTTCGAGTTTGAAATCGCACATACAGTACAAACATATAAAAGAGAAGCCTTTCATGTGCGACCTTTGTGATTATAGATGTGTTCAGGCTAGAAATATGAAATCTCACATACAGCACAAACATACAAAGCAGAAGCCTTTGCACTGCGACCTTTGTGATTATAGATGTGTTCACTCTTCGAATTTGAGATATCACATACAGCACAAACATACAAAAGAGAAGCCCTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCATCCTTCGAGTTTGAAATCTCACATACAGTACAAACATACAAATGACAAGCCTTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCATCCTTCGAGTTTGAAATCTCACATACAGCACAAACATACAAAAGAGAAGCCCTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCATCCTTCGAGTTTGAAATCTCACATACAGCACAAACATACAAAAGAGAAGCCTTTGAAGTGCGACCTTTGTGGTGGTTTGAAGCCGGTGGAAGTGAAGTGCTACCATTGTGGACATGGTTCTCTGAGCTTGGCCAGGCTGAGAGGACACATCAGGACCCACATCTCTCTACATCCATTTAGCTGTCCTTATTGTAATCACAGAGCTGGTCGGCCTTCACATTTGGTACAACATATACAGTCCAAACACACCGGTGAGAAGCCTTTGCACTGCTACCTTTGTGATTTTAGATGTGTTCAACATAAGGATTTGAAACTTCACATTCAATACAAACATACAAAAGAGAAGCCTTTCAGATGCGACCATTGTGATTATAGATGTGTTCAGCCTTCGAGTTTGAAATCTCACATACAGTACAAACATACAAAAGAGAAGCCTTTGAAATGCGACCTTTGTGATTATAGATTTGTTCACTCTTCGAAATTGAGATATCACATACAGCACCAACATACAAAAGAGAAGCCTTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCATCCTTCGAGTTTGAAATCTCACATACAGTACAAACATACAAAAGAGAAGCCTTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCACTCTTCGAATTTGAGATATCACATACAGCACAAACATACCAAAGAGAAGCCTTTGGCCGTCCGCACTGCAACTGTTTTGCGACCTTGCCCATGTAAAGTAGTGGGGGTCCGCACACGGGGCGACCAAACGAGACCGATTTGA
- Protein Sequence
- MASDVRRYVEGCGACAKRKGPFGRQAPLGESIQTQGPMDWVVHIDRMKTYKGRLEAGGRGGRAMSDQGGPCQVASRGARGQRGGCRMETHPTFSSGREPPGAEREPNAGIRVTRLSGTTAGTGGGRHRERPRRIRRTRRGIRGLEPLEVVCYHCGHGFVSLARLRGHIRTNHTHTSLHPLSCPYCNHRAGRPSRLVQHIQSKHTGEKPLHCDLCDYRCVHPSSLKSHIQYKHIKEKPFMCDLCDYRCVQARNMKSHIQHKHTKQKPLHCDLCDYRCVHSSNLRYHIQHKHTKEKPLKCDLCDYRCVHPSSLKSHIQYKHTNDKPLKCDLCDYRCVHPSSLKSHIQHKHTKEKPLKCDLCDYRCVHPSSLKSHIQHKHTKEKPLKCDLCGGLKPVEVKCYHCGHGSLSLARLRGHIRTHISLHPFSCPYCNHRAGRPSHLVQHIQSKHTGEKPLHCYLCDFRCVQHKDLKLHIQYKHTKEKPFRCDHCDYRCVQPSSLKSHIQYKHTKEKPLKCDLCDYRFVHSSKLRYHIQHQHTKEKPLKCDLCDYRCVHPSSLKSHIQYKHTKEKPLKCDLCDYRCVHSSNLRYHIQHKHTKEKPLAVRTATVLRPCPCKVVGVRTRGDQTRPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -