Basic Information

Insect: Aradus depressus
Gene Symbol: -
Assembly: GCA_963662175.1
Location: OY759221.1:19309521-19314964[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00063 0.11 14.4 0.2 2 23 108 131 107 131 0.91

2 15 0.083 14 7.7 5.3 1 23 214 238 214 238 0.92

3 15 1.2 2e+02 4.1 0.4 1 23 258 282 258 282 0.95

4 15 0.00066 0.12 14.3 0.4 2 20 362 380 361 380 0.93

5 15 0.0027 0.47 12.4 1.0 3 23 400 421 398 421 0.96

6 15 0.0032 0.56 12.2 1.5 1 23 448 470 448 470 0.96

7 15 0.00074 0.13 14.2 3.3 1 23 480 502 480 502 0.98

8 15 0.028 4.8 9.2 0.7 3 20 513 530 511 532 0.92

9 15 0.0016 0.28 13.1 1.6 2 23 544 565 543 565 0.96

10 15 4.1e-05 0.007 18.2 2.4 2 23 607 629 607 629 0.97

11 15 1.6 2.7e+02 3.7 0.2 2 21 655 674 654 675 0.89

12 15 1.6 2.8e+02 3.7 0.1 3 22 821 840 820 840 0.92

13 15 1.1 1.8e+02 4.2 0.1 2 16 927 941 926 943 0.83

14 15 0.0024 0.41 12.6 0.1 2 23 980 1001 979 1001 0.95

15 15 4.5e-05 0.0078 18.0 2.0 1 23 1085 1107 1085 1107 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00063	0.11	14.4	0.2	2	23	108	131	107	131	0.91
2	15	0.083	14	7.7	5.3	1	23	214	238	214	238	0.92
3	15	1.2	2e+02	4.1	0.4	1	23	258	282	258	282	0.95
4	15	0.00066	0.12	14.3	0.4	2	20	362	380	361	380	0.93
5	15	0.0027	0.47	12.4	1.0	3	23	400	421	398	421	0.96
6	15	0.0032	0.56	12.2	1.5	1	23	448	470	448	470	0.96
7	15	0.00074	0.13	14.2	3.3	1	23	480	502	480	502	0.98
8	15	0.028	4.8	9.2	0.7	3	20	513	530	511	532	0.92
9	15	0.0016	0.28	13.1	1.6	2	23	544	565	543	565	0.96
10	15	4.1e-05	0.007	18.2	2.4	2	23	607	629	607	629	0.97
11	15	1.6	2.7e+02	3.7	0.2	2	21	655	674	654	675	0.89
12	15	1.6	2.8e+02	3.7	0.1	3	22	821	840	820	840	0.92
13	15	1.1	1.8e+02	4.2	0.1	2	16	927	941	926	943	0.83
14	15	0.0024	0.41	12.6	0.1	2	23	980	1001	979	1001	0.95
15	15	4.5e-05	0.0078	18.0	2.0	1	23	1085	1107	1085	1107	0.95

Sequence Information

Coding Sequence: ATGAGGTCATTGTTGAACGGACTGACGTTGAAAGAGATGAAGAGAATAACATTTCAACTTGCGGAGAAGACAGGACTTGCAGTCCGTTATATTAAACAAGAACCTGTTGAGTTTGATGAAACACTTGAAGATGACATTCCCGCTAGTTTAAATCTCGTACCGGTAAAGTCAGAACATTATAGAATGCATCATGAAGAGTTTCTCACTCCTGATGACAGTCTGACAAGAGCTGCAGACGAAGAAGAGGATGAATTGATGATGTTGGCGGAAGAAGAGGCGTGTGATGGCTATGAGCCGGCTAGCGGGGAGACTGAAAATTTGCAATGTTTGCTGTGTGATTTGAGTTTTACATCATTGGGTAGCTTGTACCAACACATGAGTACCAGCATACATGAGCAGAAAGCAATGGCCGCTGCAGCTGCCTCTACAAGTGCTCGTATGCATGGTGGCAACGCTTCAAGAGGAGGTAGGAATCAATTCCTTAACCCGGGGAGTGCCAGGCACTTGTATACTGATCCAGGGTTTCCCAGGGACCCAAGACACTATGATCAATCAACTGAAGGCCCAACCGGCTTTCGTGGTTTCTCCGTTGCAGACTCATATTCAAAATTTAACCTGCTTCCACCACCAGATGAATCATTCCGCTGTAAAATTTGTGCTGTGACTTTTAAGAAACGTTTTGATTATCATCGGCATACTCTTACAAAAAAAcacagaagaaataaaaaaattgcctCTTTTACAAACAATCCAAATATAAACAGATCGCCATTTATATGCCCCATGGAGGATTGTAACTTTTCTTCTATTGAAGGAATGAAACTCCTACACCATATGAAATTACATGGTATATCAAAACCTAATCAAATTCCCACTTCAGTTTACAATAGGAATGAAAGGTTTCTCAGTGGAGGTTCTGGACAAGATATGCGACAGCGTAAACTTGACGAAAGGAACGTGTTCGGCGGCGTTGGGTGGCAAAATCAAGAGCCAAGAGTTAtgttgagagagagagagcatgCGCAGACGTTTCCTTCCCCGGTGCAGTCTCCGTCCATCTCTGGGTCTCCTCTTCCAATGTTGAACTGTCGATTCTGTGACCAAGTGTTCAGAAATCAAGGAGATCTCACAAGACATTACCCAATTTGTTCTGAGAGAAGAGCATCTCGACATCTGGACCCCGAGCCTAAAATGATATGTAAACGTTGCAATTTAAGTTTCACTTCGAAAAATGTTTACATGAATCACATGCAGATCTACCACAAGGAAGATGGGTTCCAAATAATGCCTAGACCCAGGAAGAATGCTGTTCCTTCAAATAGGATCAAAAAAGGTCATTTTTATGTTTGCAATCAGTGTGGCAAGAAATTCACTTTATTATCATCCTGGAGTTTTCATATGAAACAACATGCTCAGCAGAAAACTACAGTTGGAAAATTTAGTTGTAAAATTTGTTATAAAGTTTTCAAAGCGAGAAGTACTTACAGGGATCATTTTAGGAGTCATTTCGTGGCACCGGGTTCTAAAGAACTGTTTTGTCACAAGTGTTTCAAAGTTTTGCCTAATCGTTCTGAGTTAAATCTGCATAAAGCAAGTGGCAATTGTCCTTCAATGCCCAAAAAAATTCTTTCTTGTGACATCTGTCAGCATACATACACTGATGTCAAGGCATTAAACAAACACAAACTTACTCATCAAATGCAAAAAGTAACCTCGACTCCTATAGCAGATGCTTCTTACAATAGATCAAACCTTAATTTAATTTCTCCACAATTTTCTAGTACACCAAAAGTTCAGGCTTTCAGTAATGAATTTCCTCGCTGTGACTTTTGTGATAGACACTATTCTAATTTGGGCAATTTAGTGAAGCATATGAAAACTATGCATCCGGAAGAAAATCTCGATGGCATCCGGTCTAAATATGCGACAAGTGTGAAAGCTGTAAAACGACCAACTCAGTGGATTTGTAAACATTGTAATGCTGTTCGTAGCAATAGACGTTATTTAGTTCCACATTTAAGGAGTTGCAAATTCAATATTTTCAGACATAAAGAAGGTGTTTGTATACAGTGTGGAAAGGAATTTATTTCTGCCAAGTACAAGATTTGTCCAGAGTGTTTGCCGGAGGGAGCATTAGGGACGAATAAACAACCGGGTGAATTGGCCATGCTTCTTCAAGAAGAGCCGTTAATACCAAACTCTCAGGTATTGAAACAGAAACCAATTCCTTCTTTGAAGCCAATACCTCAGGTACAGAAACCAATACTCCCGCCAAAACCAACACTTCCGGTATTGTCACAGAAACTACCTGAGACTATAAAAGAGAAATCAATATCAAAAAAAGAACTACCGAAGATTAATATTCCTTTATATAAATGTCCAAATGGAAATAGATACTTTCTTAAGCAAGTATATATCGCGAAACATCTCCGTGTATGTACAGGCAATTGTTACCCTATGTGTGGCAACTGTCGAAGAGAGTTTGGAAATTTCATTGATTACAGAGAACATCTTCTAAcaagtaaaaaatgttatagaCGGAAAAGTATTAACATAAAGAGTGTACAATTTGTTACGCCAGAAGATGAAAGCTATGCTGATGGAGAGGGCTCAGTGAATGAGTCGAGTGTAGCACCTACGGAGGGCTCAGTGACCGGTGAAATAACCCTTGGCGCACGCACATGTACATTTTGTTTCAAAAATCTTCATATGCAGAGGAACATCTACAGACATTTGTACACTTGCGTTAAGGGTCTGTATGTGGCTAAAGAAAACATCACTTGCGGACGGTGTGGAAGAGTGTTTGGCCGGGTTTCCACTATGAAGGAACTTGCGGCTCAAGTCAAGGGTCACATTTTAGATTGTTACTTCGTCCCTTACTACGAAGGAGAGGACGTTCTTCCCAATGGTTCTCCGGCACCTTCCAAGCCTCCTCTGGTCTGTTATGTGTGTGCTTTTGGTTTTACTTCAGAAGTCAATCTACAGAAACATATTAAAGATCACCGCTACAAGAAAGACGAAGTGAATGTCGTTGTATATCGTCTTGAAGATTTGTACAAACCATCAGATGAATCTTTTCATGCCAATTGGGTCCATCGAGCGCAAGTGCACAACAGCAGCTTGCCTATATTCCCCGCCAGCAGTGATTCTACCGGCAGTACGGTGCGACAGACGAAGAAAAAGTGTATCAACATCATCAGAGATTATGTTACTCAAGACTCACTTGATCGTAAGGAAGAGGCTAAAGCGTTCTTTAAGTGTGATCTGTGTGACCGTAAATTTACCACCAGAGGCAAACTGAAGAATCACAAGGAAGCTCATGAGAACTATCTTATGACCCATGGTGATCACGTCATGAAAGATGCCGGTAGTTCCTCTTTTCTGTCTCTCACCTACTAA
Protein Sequence: MRSLLNGLTLKEMKRITFQLAEKTGLAVRYIKQEPVEFDETLEDDIPASLNLVPVKSEHYRMHHEEFLTPDDSLTRAADEEEDELMMLAEEEACDGYEPASGETENLQCLLCDLSFTSLGSLYQHMSTSIHEQKAMAAAAASTSARMHGGNASRGGRNQFLNPGSARHLYTDPGFPRDPRHYDQSTEGPTGFRGFSVADSYSKFNLLPPPDESFRCKICAVTFKKRFDYHRHTLTKKHRRNKKIASFTNNPNINRSPFICPMEDCNFSSIEGMKLLHHMKLHGISKPNQIPTSVYNRNERFLSGGSGQDMRQRKLDERNVFGGVGWQNQEPRVMLREREHAQTFPSPVQSPSISGSPLPMLNCRFCDQVFRNQGDLTRHYPICSERRASRHLDPEPKMICKRCNLSFTSKNVYMNHMQIYHKEDGFQIMPRPRKNAVPSNRIKKGHFYVCNQCGKKFTLLSSWSFHMKQHAQQKTTVGKFSCKICYKVFKARSTYRDHFRSHFVAPGSKELFCHKCFKVLPNRSELNLHKASGNCPSMPKKILSCDICQHTYTDVKALNKHKLTHQMQKVTSTPIADASYNRSNLNLISPQFSSTPKVQAFSNEFPRCDFCDRHYSNLGNLVKHMKTMHPEENLDGIRSKYATSVKAVKRPTQWICKHCNAVRSNRRYLVPHLRSCKFNIFRHKEGVCIQCGKEFISAKYKICPECLPEGALGTNKQPGELAMLLQEEPLIPNSQVLKQKPIPSLKPIPQVQKPILPPKPTLPVLSQKLPETIKEKSISKKELPKINIPLYKCPNGNRYFLKQVYIAKHLRVCTGNCYPMCGNCRREFGNFIDYREHLLTSKKCYRRKSINIKSVQFVTPEDESYADGEGSVNESSVAPTEGSVTGEITLGARTCTFCFKNLHMQRNIYRHLYTCVKGLYVAKENITCGRCGRVFGRVSTMKELAAQVKGHILDCYFVPYYEGEDVLPNGSPAPSKPPLVCYVCAFGFTSEVNLQKHIKDHRYKKDEVNVVVYRLEDLYKPSDESFHANWVHRAQVHNSSLPIFPASSDSTGSTVRQTKKKCINIIRDYVTQDSLDRKEEAKAFFKCDLCDRKFTTRGKLKNHKEAHENYLMTHGDHVMKDAGSSSFLSLTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -