Adep019732.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759217.1:51748819-51767711[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.066 11 8.0 1.0 2 23 26 48 25 48 0.96 2 24 0.021 3.6 9.6 0.4 2 23 57 79 56 79 0.95 3 24 0.001 0.17 13.8 6.7 2 23 86 108 85 108 0.95 4 24 0.017 3 9.9 5.8 2 23 115 137 114 137 0.94 5 24 0.69 1.2e+02 4.8 4.0 1 23 143 166 143 166 0.95 6 24 0.00036 0.062 15.2 4.4 1 23 172 195 172 195 0.96 7 24 0.1 18 7.4 3.9 2 23 202 224 201 224 0.94 8 24 0.0097 1.7 10.7 4.6 2 23 231 253 230 253 0.94 9 24 0.03 5.2 9.1 4.6 2 23 260 282 259 282 0.95 10 24 0.47 81 5.4 2.0 1 16 288 303 288 305 0.89 11 24 0.066 11 8.0 1.0 2 23 600 622 599 622 0.96 12 24 0.002 0.35 12.8 1.6 2 23 631 653 630 653 0.96 13 24 0.00091 0.16 13.9 3.6 2 23 660 682 659 682 0.95 14 24 0.0049 0.85 11.6 2.6 1 23 688 711 688 711 0.96 15 24 0.16 29 6.8 7.5 1 23 717 740 717 740 0.94 16 24 0.0015 0.27 13.2 3.2 2 23 747 769 746 769 0.93 17 24 0.0074 1.3 11.0 4.5 2 23 776 798 775 798 0.94 18 24 0.076 13 7.8 10.1 1 23 804 827 804 827 0.96 19 24 4.7e-05 0.0081 18.0 2.6 2 23 834 856 833 856 0.95 20 24 0.0002 0.034 16.0 2.3 2 23 863 885 862 885 0.95 21 24 0.0091 1.6 10.8 5.0 2 23 892 914 891 914 0.96 22 24 0.072 12 7.9 3.1 2 23 921 943 920 943 0.95 23 24 1.6 2.8e+02 3.7 0.7 2 23 950 972 949 972 0.94 24 24 2.9 5e+02 2.9 7.6 1 23 978 1001 978 1001 0.96
Sequence Information
- Coding Sequence
- ATGAGACGTCTTCACTGCCAGGATCGAAAAAGGAGACGCCAACAGGTCAGAAGTGGTTTGGAACCGGTGGAAGTGGTATGCTACCATTGTGGACATGGTTCTGTGAGCTTGGCCAGGCTGAGAGGACACATCCGAACCAACCACACCCACACCTCTCTACATCCACTTAGTTGTCCTTATTGTAATCACAGAGCTGCTCAGGGTTCATATTTGGCACAACATATACAGTCTAAACACACCGGTGAGAAGCCGCTGAAGTGCAACCATTGTAATTATAGATGTGTTCAGCCTTCGAAATTGAAAAGACACATACAGCACATACATACAAAAGAGAAGCCTTTGCACTGCGACCATTGTGATTATAGATGTGTTCAGCCTTGGAGTTTGAAAACTCACATACAGCACATACATACAAAAGGGAAGCCTTTCATGTGCGACCTTTGTGATTATAGATGTGTTGAGGCTAGAAGTATGAAATATCACATACAGCACAAACATACAAAAGAGAAGCCTTTCAGGTGCGACCGTTGTGATTATAGATGTGTTGATCCTTCGAATTTGAAATCTCACATACAGCACAAACATACAAAACAGAAGCCTTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCATCCTTCGAGTTTGAAATTTCACATACAGCAGAAACATACAAAAGAGAAGCCTTTGCACTGCGACCATTGTGATTATAGATGTGTTCAGCCTTGGAGTTTGAAAACTCACATACTGTACAAACATACAAAAGAGAAGCCATGGAAATGTAACCAATGTGATTATAGAGGTGTTCAGCATTCGAGTTTGAAATCTCACTTAAAGCACAAACATACAAAAGAGAAGCCTTTCAGGTGCGACCATTGTGATTATAGATGTGTTCAACGTAGggGCCTTTCACACCGAAGATGCAAGACGCAAGATGCATGCATCCTGGAGGCAGGAGGCATGTGCGTCCTGCATCTTCATGAAAAGCCTTTCACACCAAAGATGCACGTGCCTCTTGCACCTTCTGTTCAAAGAAGACGAAGACAAAGAAGCAATCGTTTATGGCAGCATCCCTTCTGGACTAATGCTGGAGAGCATAGCCCTGCTATTGAGTCTCAGCAATTACTGAACCATCCAGTAAAGTTTCAGGTGTATTATAAAATGGAGATTCCGACTTTTAACAAGTTGTTGGATCTCATGGAGCCGTCGGGATACAAATTATCGGTTGTGAGTATCTGCGAAAGAAAGACTACTGATATTTCTGAGGTCACGTTGAAGTTCTCTGTGTCTGAAGTTCCTGACAAACCTGAACTCGGTGTTGTTTTTGATCCTCGGTCAACAGTCTCGGGACAAACTTTGGCGCCACTTGGCGCATCTGCAGTTGTTCAGTTAAAATTTCTCGACATGAGTCAAATGAAATGTTGCATTCCTCTGCCTTCCACCATCCGTGAAGCCGAAGTAGAAACAGTTGTCGTGAAGCAGGAGCCTGACATAGATGACATGACTTCATATCCATGGGGAGGACGTAATACAATAGACATCAAAGAAGAACCAGAGCTGCTCCTGGGATATTCACCGTCAGCCAGTCTCTGTAACTGCACTCTAATGTCGGACTCCATGCAGCCTCCTCGCATCATTCACCAAaccatcctgccacctcagCTTTGGCCTTCGACGCGTCTTTCTCGGGATCTCGCGTTTGCCCATCCTGgccacatgtccggcccacctgagGCTTACCAGCCTGATGACCTTTACAACGTCTGGCTCCTGAGTGGTTTGGAGCCAGTGGAAGTGGTGTGCTACCATTGTGGACATGGTTCTGTGAGCTTGGCCAGGCTGAGAGGACACATCCGGACCAACCACACCCACACCTCTCTACATCCGCTTAGCTGTCCTTATTGTAATCACAGAGCTGGTCGGCCTTCACATTTAGTACAACATATACAGTCTAAACACACCGGTGAGAAGCCCTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCATCCTTCGAGTTTGAAATCTCACATACAGTACAAACATATAAAAGAGAAGCCTTTCATGTGCGACCTTTGTGATTATAGATGTGTTCAGGCTAGAAATATGAAATCTCACATACAGTACAAACATACAAAAGAGAAGCATTTCAGGTGCGACCATTGTGATTACAGATGTGTTCAGCCTTCGAGTTTGAAATTTCACTTACAGCACAAACATACAAAAGAGAAGCCTTTGCACTGCGACCTTTGTGATTATAGATGTGTTCAACCTTCGAATTTGAAAAGTCACTTGctgtataaacatacaaaagaGAAGCCCTGGAAATGTAAACATTGTGATTATAAATGTGTTCAGCCTTGGAGTTTGAAATCTCACACACTGTACAAACATTCAAAAGAGAAGCCTTTCAGGTGCGACCATTGTGATTACAGATGTGTTCAACATAAGTATTTGAAAGTTCATATacaacacaaacatacaaaagAGAAGCCTTTGAAGTGCGACCTTTGTGATTATAGATGTGTTCAGCCTTCGAGTTTGAAAAGGCACATGCAGTACAAACATGAAAAAGAGAAGCCTTTGAAGTGCGACCTTTGTGTTTATAGATGTGCTCAGCCTTCGAATTTGAAAAGGCACATGCAGTACAAACATACAAAAGAGAAGCCTTTGAAATGCGATTATTGTGATTATAGATGTGTTCAGCCTAGAACTATGAAATCTCACATACGACACAAACATACAAAAGAGAAGCCGCTGAGGTGCTACTATTGTGACTACAGGTGTGTTCAACGTTCGATATTGAATAGTCATATAaagaacaaacatacaaatgaGGATTCATGGAAGTGTGGCCGTTGTACTTACAGATGTGCTGCTCTTCCACTTTTGAAACTTCATATACTGTCTAAGCATAGAGTTGAGAAACCATTTCATTGCTATCATTGTACTTTTGTGTCTGTTTCTCGCTGCAGTTTAGTACGTCATATTCAGTACAAACATATGGTAGAGAACCCGACTGATGCTAATTCGTGTTACACTGTAACTTCTCCGATATGA
- Protein Sequence
- MRRLHCQDRKRRRQQVRSGLEPVEVVCYHCGHGSVSLARLRGHIRTNHTHTSLHPLSCPYCNHRAAQGSYLAQHIQSKHTGEKPLKCNHCNYRCVQPSKLKRHIQHIHTKEKPLHCDHCDYRCVQPWSLKTHIQHIHTKGKPFMCDLCDYRCVEARSMKYHIQHKHTKEKPFRCDRCDYRCVDPSNLKSHIQHKHTKQKPLKCDLCDYRCVHPSSLKFHIQQKHTKEKPLHCDHCDYRCVQPWSLKTHILYKHTKEKPWKCNQCDYRGVQHSSLKSHLKHKHTKEKPFRCDHCDYRCVQRRGLSHRRCKTQDACILEAGGMCVLHLHEKPFTPKMHVPLAPSVQRRRRQRSNRLWQHPFWTNAGEHSPAIESQQLLNHPVKFQVYYKMEIPTFNKLLDLMEPSGYKLSVVSICERKTTDISEVTLKFSVSEVPDKPELGVVFDPRSTVSGQTLAPLGASAVVQLKFLDMSQMKCCIPLPSTIREAEVETVVVKQEPDIDDMTSYPWGGRNTIDIKEEPELLLGYSPSASLCNCTLMSDSMQPPRIIHQTILPPQLWPSTRLSRDLAFAHPGHMSGPPEAYQPDDLYNVWLLSGLEPVEVVCYHCGHGSVSLARLRGHIRTNHTHTSLHPLSCPYCNHRAGRPSHLVQHIQSKHTGEKPLKCDLCDYRCVHPSSLKSHIQYKHIKEKPFMCDLCDYRCVQARNMKSHIQYKHTKEKHFRCDHCDYRCVQPSSLKFHLQHKHTKEKPLHCDLCDYRCVQPSNLKSHLLYKHTKEKPWKCKHCDYKCVQPWSLKSHTLYKHSKEKPFRCDHCDYRCVQHKYLKVHIQHKHTKEKPLKCDLCDYRCVQPSSLKRHMQYKHEKEKPLKCDLCVYRCAQPSNLKRHMQYKHTKEKPLKCDYCDYRCVQPRTMKSHIRHKHTKEKPLRCYYCDYRCVQRSILNSHIKNKHTNEDSWKCGRCTYRCAALPLLKLHILSKHRVEKPFHCYHCTFVSVSRCSLVRHIQYKHMVENPTDANSCYTVTSPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -