Basic Information

Insect: Aradus depressus
Gene Symbol: -
Assembly: GCA_963662175.1
Location: OY759226.1:13846029-13848186[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.9 5e+02 2.9 0.1 11 23 107 120 104 120 0.88

2 15 0.00073 0.13 14.2 0.5 1 23 126 149 126 149 0.97

3 15 0.0008 0.14 14.1 0.1 2 23 156 178 155 178 0.93

4 15 0.035 6 8.9 1.1 2 23 185 207 184 207 0.95

5 15 0.00012 0.02 16.7 1.0 1 23 213 236 213 236 0.97

6 15 0.0033 0.56 12.2 0.8 1 23 242 265 242 265 0.97

7 15 0.0016 0.28 13.1 2.6 1 23 271 294 271 294 0.97

8 15 0.0072 1.3 11.1 1.2 2 23 301 323 300 323 0.93

9 15 0.23 40 6.3 1.0 1 23 329 352 329 352 0.96

10 15 8.7e-05 0.015 17.1 0.4 1 23 358 381 358 381 0.97

11 15 0.0054 0.94 11.5 4.2 1 23 387 410 387 410 0.95

12 15 0.00018 0.03 16.2 1.1 1 23 416 439 416 439 0.97

13 15 0.15 25 7.0 3.7 1 23 445 468 445 468 0.93

14 15 6.9e-05 0.012 17.4 0.4 1 23 474 497 474 497 0.97

15 15 7.4e-05 0.013 17.3 1.7 1 23 503 526 503 526 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.9	5e+02	2.9	0.1	11	23	107	120	104	120	0.88
2	15	0.00073	0.13	14.2	0.5	1	23	126	149	126	149	0.97
3	15	0.0008	0.14	14.1	0.1	2	23	156	178	155	178	0.93
4	15	0.035	6	8.9	1.1	2	23	185	207	184	207	0.95
5	15	0.00012	0.02	16.7	1.0	1	23	213	236	213	236	0.97
6	15	0.0033	0.56	12.2	0.8	1	23	242	265	242	265	0.97
7	15	0.0016	0.28	13.1	2.6	1	23	271	294	271	294	0.97
8	15	0.0072	1.3	11.1	1.2	2	23	301	323	300	323	0.93
9	15	0.23	40	6.3	1.0	1	23	329	352	329	352	0.96
10	15	8.7e-05	0.015	17.1	0.4	1	23	358	381	358	381	0.97
11	15	0.0054	0.94	11.5	4.2	1	23	387	410	387	410	0.95
12	15	0.00018	0.03	16.2	1.1	1	23	416	439	416	439	0.97
13	15	0.15	25	7.0	3.7	1	23	445	468	445	468	0.93
14	15	6.9e-05	0.012	17.4	0.4	1	23	474	497	474	497	0.97
15	15	7.4e-05	0.013	17.3	1.7	1	23	503	526	503	526	0.97

Sequence Information

Coding Sequence: ATGAATGACGAGAGATTGAGGTACTACAAAAACTTGCTGCTACCAGCACTGCTAACAACTACTACTGTTGCTGATTTggatactgaaaataataatgtgCCTTCTGCTGATGCTGTCACTGATGAAGACGAAAATAAAGAAGCCGGCGATGAAATTTTGCTCCTACACGATGATGGAGTAGTTGTTGATTCCATTGAGGATGCTCATGCTATTATAGAAGAAGCTGAAGAGTTCAAGAACTataaaaatatgtattcactGACTTTATGCAAGAAGAGAAGCAGCAGTCTTTCTACAGACAGGAATGTGAGAGGTTCCGTAACATCTTCTTATCTGAAATCACATATTGCAAGGACgcatactggagacaaaccttACAAATGTTCCTCATGCGAGTACAGTACTGTGAGATCTAATGCGCTGAAAATACATATTGCAAGAAAGCATAGTGGAGTCAAACCTTGGAAATGTTCCTCCTGCGACTACAGTTCCGTAAGGCCTTCTGAACTGAAATTACATATTGCATGGAAGCATACTGGAGAAAAACCTTTAAAATGTTCCTCATGCGAGTTCAGTACCGTTACATCTTCTaatctgaaatttcatattgcaACGAaacatactggagacaaacctttcaaatgttcctcGTGCGAGTACAGTACCGTTAATTCTTCTAATCTGAAATTACATATTGCAAGGAaacatactggagacaaaccttACAAATGTTCCTCGTGTGAGTACAGTACCGTTAATTCTGGTCGTCTGAAATCACATATTGCAAGGAAGCATACTGGAGAAAAACCTTACAAATGTTCCTCTTGCGAATACCGTTGCGTGGACACTTCTGATCTGAAAACACATATTGCAAGGAAACATACTGCAGACAAACCTAACAAATGTTCCTTCTGCGACTATACTTCCGTAAGTTCTACTGAACTGAAAACACATTATGCAAATAagcatactggagacaaacctttcaaatgtttcTCCTGCGACTATAGTTCCTTAAGAGCATCTGTCCTGAAAACACATATTGCAAGGAAGCATACTGCTGACAGACGTTTCAAATGTTCCTCCTGCGACTATAGTTCTGTAACTCCTTCTGAACTGAAAGAACATATTGCACGAAagcatactggagacaaaccaTTCAAATGTTCCTCCTGCGACTACAGTTGCGTGTCATCTTCTGAAATGAGAAAACATTTTGCAAGGAAACATACTGcagacaaacctttcaaatgttccttCTGCGACTATAGTTCCGTAAGACCTTTTGAACTGAAAACACATATTGCGAGGAAGCATACTGATCACAGACCATTCATATGTTTCTCCTGCGACTACAGTTGCGTGTCATCtactgaaatgaaaaaacattttgcaaggaaacatactggagacacacctttcaaatgttcctccTGTGACTATAGTTCCGTAAGACCTTCTGAACTGAAAGAACATATTGCAAGGAagcatactggagacaaacctttTAAATGTTCCTCCTGTGACTATAGTTCCGTAAGACGTTATGAACTGAAAAGACATATTGCAAGGAAGCATACTGATGACAGACGTTTCAAATGGTCCTCCTGCGACTAG
Protein Sequence: MNDERLRYYKNLLLPALLTTTTVADLDTENNNVPSADAVTDEDENKEAGDEILLLHDDGVVVDSIEDAHAIIEEAEEFKNYKNMYSLTLCKKRSSSLSTDRNVRGSVTSSYLKSHIARTHTGDKPYKCSSCEYSTVRSNALKIHIARKHSGVKPWKCSSCDYSSVRPSELKLHIAWKHTGEKPLKCSSCEFSTVTSSNLKFHIATKHTGDKPFKCSSCEYSTVNSSNLKLHIARKHTGDKPYKCSSCEYSTVNSGRLKSHIARKHTGEKPYKCSSCEYRCVDTSDLKTHIARKHTADKPNKCSFCDYTSVSSTELKTHYANKHTGDKPFKCFSCDYSSLRASVLKTHIARKHTADRRFKCSSCDYSSVTPSELKEHIARKHTGDKPFKCSSCDYSCVSSSEMRKHFARKHTADKPFKCSFCDYSSVRPFELKTHIARKHTDHRPFICFSCDYSCVSSTEMKKHFARKHTGDTPFKCSSCDYSSVRPSELKEHIARKHTGDKPFKCSSCDYSSVRRYELKRHIARKHTDDRRFKWSSCD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -